Wall clock time and date at job start Mon Mar 30 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38122 * 120.40396 * 2 1 4 4 C 1.39622 * 118.33904 * 180.02562 * 3 2 1 5 5 N 1.38536 * 120.53337 * 179.97438 * 4 3 2 6 6 C 1.46850 * 110.99859 * 304.23017 * 5 4 3 7 7 C 1.53040 * 109.52234 * 174.16193 * 6 5 4 8 8 C 1.53121 * 109.28026 * 59.17889 * 7 6 5 9 9 C 1.50694 * 109.52602 * 182.43846 * 8 7 6 10 10 H 1.08002 * 119.99904 * 119.67825 * 9 8 7 11 11 C 1.37880 * 120.00046 * 299.69058 * 9 8 7 12 12 N 1.31511 * 119.99746 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99723 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46943 * 90.00022 * 13 11 9 15 15 H 1.48498 * 109.46686 * 209.99659 * 13 11 9 16 16 H 1.48496 * 109.47245 * 329.99578 * 13 11 9 17 17 C 1.53121 * 109.16134 * 302.35229 * 8 7 6 18 18 C 1.46847 * 111.00004 * 180.02562 * 5 4 3 19 19 N 1.32995 * 118.93492 * 0.02562 * 4 3 2 20 20 C 1.31750 * 120.68612 * 359.97438 * 19 4 3 21 21 C 1.50698 * 119.08628 * 179.97438 * 20 19 4 22 22 O 1.42901 * 109.46931 * 270.02279 * 21 20 19 23 23 N 1.31794 * 121.83438 * 359.97438 * 20 19 4 24 24 H 1.08997 * 109.46811 * 269.97322 * 1 2 3 25 25 H 1.09002 * 109.47100 * 29.97273 * 1 2 3 26 26 H 1.09002 * 109.47085 * 149.97352 * 1 2 3 27 27 H 1.08001 * 120.82733 * 0.02733 * 3 2 1 28 28 H 1.08992 * 109.46622 * 294.17665 * 6 5 4 29 29 H 1.08998 * 109.45954 * 54.15299 * 6 5 4 30 30 H 1.09003 * 109.50163 * 299.23932 * 7 6 5 31 31 H 1.08993 * 109.50345 * 179.12488 * 7 6 5 32 32 H 1.09001 * 109.51814 * 62.24872 * 8 7 6 33 33 H 0.97004 * 119.99515 * 180.02562 * 12 11 9 34 34 H 1.09005 * 109.49995 * 297.70933 * 17 8 7 35 35 H 1.08995 * 109.50178 * 177.59153 * 17 8 7 36 36 H 1.08995 * 109.46399 * 305.85744 * 18 5 4 37 37 H 1.09002 * 109.46229 * 65.82419 * 18 5 4 38 38 H 1.09002 * 109.47114 * 30.01689 * 21 20 19 39 39 H 1.09000 * 109.47686 * 150.02027 * 21 20 19 40 40 H 0.96704 * 114.00190 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1410 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 3.9810 3.1667 -1.1347 7 6 4.7167 4.5039 -1.0223 8 6 6.2269 4.2512 -1.0169 9 6 6.9558 5.5590 -0.8463 10 1 7.6035 5.7092 0.0048 11 6 6.7958 6.5640 -1.7767 12 7 6.0074 6.3809 -2.8132 13 14 7.6989 8.1854 -1.5647 14 1 9.0187 8.1090 -2.2411 15 1 6.8970 9.2808 -2.1665 16 1 7.8987 8.4553 -0.1182 17 6 6.5758 3.3156 0.1439 18 6 5.7861 2.0129 -0.0022 19 7 4.2024 -0.0454 -0.0016 20 6 3.4956 -1.1573 -0.0016 21 6 4.2140 -2.4820 -0.0033 22 8 4.4399 -2.8995 -1.3512 23 7 2.1777 -1.1432 0.0000 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6862 2.1380 0.0004 28 1 4.2599 2.6760 -2.0671 29 1 2.9053 3.3421 -1.1243 30 1 4.4277 5.0016 -0.0966 31 1 4.4564 5.1350 -1.8720 32 1 6.5222 3.7887 -1.9588 33 1 5.8951 7.0878 -3.4679 34 1 6.3160 3.7946 1.0880 35 1 7.6436 3.0977 0.1273 36 1 6.0215 1.3501 0.8305 37 1 6.0566 1.5276 -0.9401 38 1 5.1700 -2.3776 0.5098 39 1 3.6053 -3.2262 0.5103 40 1 4.8998 -3.7467 -1.4287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328591219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:23 Heat of formation + Delta-G solvation = -23.344831 kcal Electronic energy + Delta-G solvation = -21601.600545 eV Core-core repulsion = 18415.262647 eV Total energy + Delta-G solvation = -3186.337898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.38156 -39.98908 -37.80756 -36.35012 -35.03249 -33.89495 -32.05673 -31.66148 -29.56241 -28.36414 -27.69404 -24.64409 -24.14137 -22.75513 -22.58472 -20.58279 -18.84042 -18.59071 -18.52565 -17.88698 -16.57966 -16.46701 -16.28911 -15.95407 -15.60920 -15.23756 -15.02767 -14.78108 -14.43497 -14.34852 -14.04518 -13.78472 -13.30902 -13.20017 -13.08163 -12.89483 -12.78239 -12.36919 -12.15818 -12.05291 -11.88011 -11.76343 -11.36489 -11.12698 -10.94474 -10.80283 -10.68300 -10.42355 -10.33304 -9.49487 -8.09580 -6.22460 -0.17277 0.04970 1.42441 1.43759 1.53639 2.21922 2.44214 2.63500 2.84639 3.09408 3.18317 3.67317 3.84457 4.02683 4.04085 4.10787 4.23338 4.26217 4.26426 4.38949 4.46835 4.56363 4.61650 4.65296 4.75984 4.82182 4.89240 4.96116 4.96748 5.12816 5.17189 5.35423 5.46486 5.52615 5.64277 5.92521 6.03572 6.08526 6.17407 6.36765 6.84571 6.87457 7.09635 7.45709 8.95733 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028230 B = 0.004046 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.598448 B = 6919.539653 C = 7500.174712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.182 3.818 3 C -0.247 4.247 4 C 0.343 3.657 5 N -0.471 5.471 6 C 0.075 3.925 7 C -0.095 4.095 8 C 0.041 3.959 9 C -0.532 4.532 10 H 0.053 0.947 11 C 0.015 3.985 12 N -0.917 5.917 13 Si 0.954 3.046 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.269 1.269 17 C -0.101 4.101 18 C 0.083 3.917 19 N -0.568 5.568 20 C 0.323 3.677 21 C 0.153 3.847 22 O -0.585 6.585 23 N -0.543 5.543 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.166 0.834 28 H 0.024 0.976 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.075 0.925 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 -15.170 6.197 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.038 3.962 3 C -0.272 4.272 4 C 0.104 3.896 5 N -0.187 5.187 6 C -0.050 4.050 7 C -0.133 4.133 8 C 0.023 3.977 9 C -0.570 4.570 10 H 0.071 0.929 11 C -0.183 4.183 12 N -0.557 5.557 13 Si 0.780 3.220 14 H -0.204 1.204 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.139 4.139 18 C -0.044 4.044 19 N -0.291 5.291 20 C 0.053 3.947 21 C 0.074 3.926 22 O -0.395 6.395 23 N -0.263 5.263 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.105 0.895 27 H 0.184 0.816 28 H 0.043 0.957 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -9.386 -15.040 6.322 18.822 hybrid contribution 0.853 1.037 -0.625 1.482 sum -8.533 -14.003 5.697 17.359 Atomic orbital electron populations 1.20875 0.84519 1.05125 1.05003 1.22204 0.99363 0.86848 0.87737 1.22474 0.93055 1.02194 1.09460 1.20532 0.91671 0.88546 0.88837 1.58897 1.07172 1.11287 1.41354 1.22317 1.01172 0.93617 0.87849 1.21496 0.96706 0.93620 1.01484 1.18701 0.92940 0.93592 0.92485 1.21515 1.27101 0.99854 1.08552 0.92864 1.25708 0.96000 1.01778 0.94857 1.69987 1.38574 1.34388 1.12723 0.85623 0.78493 0.79519 0.78413 1.20424 1.20816 1.19306 1.21631 0.98386 0.94136 0.99701 1.21892 0.84217 0.97402 1.00852 1.68203 1.42448 0.98618 1.19811 1.23225 0.87107 0.94087 0.90293 1.20652 0.98774 0.88365 0.84801 1.86455 1.82276 1.45121 1.25617 1.68137 1.09172 1.30949 1.18025 0.87902 0.88227 0.89536 0.81626 0.95732 0.88656 0.93744 0.90667 0.99194 0.92961 0.92374 0.91986 0.89849 0.95164 0.89912 0.88595 0.73893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.21 71.23 0.73 -0.80 16 2 C 0.18 4.67 6.82 42.42 0.29 4.96 16 3 C -0.25 -7.03 8.95 22.58 0.20 -6.82 16 4 C 0.34 11.91 6.41 133.16 0.85 12.76 16 5 N -0.47 -17.58 4.68 -701.44 -3.28 -20.87 16 6 C 0.08 2.93 5.25 86.33 0.45 3.38 16 7 C -0.09 -4.40 5.12 30.65 0.16 -4.24 16 8 C 0.04 2.08 2.16 -11.46 -0.02 2.06 16 9 C -0.53 -29.21 8.56 25.60 0.22 -28.99 16 10 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 11 C 0.02 0.83 5.31 84.66 0.45 1.28 16 12 N -0.92 -52.20 11.37 21.45 0.24 -51.96 16 13 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C -0.10 -4.28 5.32 30.65 0.16 -4.12 16 18 C 0.08 3.21 4.67 86.32 0.40 3.61 16 19 N -0.57 -19.80 8.75 -185.44 -1.62 -21.42 16 20 C 0.32 9.91 7.27 138.76 1.01 10.92 16 21 C 0.15 3.39 7.48 71.24 0.53 3.92 16 22 O -0.59 -13.34 13.64 -148.98 -2.03 -15.37 16 23 N -0.54 -15.78 10.27 -176.28 -1.81 -17.59 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.10 1.19 8.09 -2.39 -0.02 1.17 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.17 3.95 7.23 -2.91 -0.02 3.92 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 3.14 6.74 -2.39 -0.02 3.12 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 3.90 6.17 -2.39 -0.01 3.88 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.08 3.02 7.73 -2.39 -0.02 3.00 16 37 H 0.03 1.25 8.12 -2.39 -0.02 1.23 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.41 4.27 9.12 -74.05 -0.68 3.60 16 Total: -1.00 -68.76 325.63 -0.68 -69.44 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.37 Total: 14.56 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 5.43 Total: -2.08 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -6.47 Total: -111.83 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -2.03 Total: -15.37 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -68.76 -0.68 -69.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328591219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.091 kcal (2) G-P(sol) polarization free energy of solvation -68.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds