Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99742 * 2 1 4 4 C 1.50696 * 120.00170 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46779 * 94.99787 * 4 2 1 6 6 N 1.46506 * 109.47041 * 179.97438 * 5 4 2 7 7 C 1.34773 * 119.99968 * 179.97438 * 6 5 4 8 8 O 1.21602 * 119.99987 * 359.73127 * 7 6 5 9 9 C 1.47436 * 119.99867 * 180.02562 * 7 6 5 10 10 C 1.41286 * 126.41299 * 359.41281 * 9 7 6 11 11 N 1.30448 * 108.02337 * 179.87788 * 10 9 7 12 12 N 1.39938 * 108.89467 * 0.38911 * 11 10 9 13 13 C 1.46503 * 125.75356 * 179.75148 * 12 11 10 14 14 C 1.50696 * 109.46974 * 269.99715 * 13 12 11 15 15 H 1.08001 * 120.00163 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99873 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99984 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00024 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47063 * 90.00165 * 18 16 14 20 20 H 1.48501 * 109.47045 * 210.00089 * 18 16 14 21 21 H 1.48501 * 109.46990 * 330.00178 * 18 16 14 22 22 C 1.34259 * 108.48882 * 359.74809 * 12 11 10 23 23 C 1.50699 * 126.28729 * 179.97438 * 22 12 11 24 24 H 1.08000 * 119.99665 * 179.97438 * 1 2 3 25 25 H 1.07992 * 120.00463 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47350 * 269.99993 * 3 2 1 27 27 H 1.09003 * 109.47019 * 29.99989 * 3 2 1 28 28 H 1.08997 * 109.46889 * 149.99626 * 3 2 1 29 29 H 1.08999 * 109.47048 * 335.00514 * 4 2 1 30 30 H 1.08993 * 109.47202 * 214.99980 * 4 2 1 31 31 H 1.09004 * 109.47178 * 60.00383 * 5 4 2 32 32 H 1.08993 * 109.47411 * 300.00065 * 5 4 2 33 33 H 0.97004 * 120.00014 * 0.02562 * 6 5 4 34 34 H 1.08000 * 125.99145 * 0.03887 * 10 9 7 35 35 H 1.09004 * 109.46911 * 29.99927 * 13 12 11 36 36 H 1.09002 * 109.46643 * 149.99548 * 13 12 11 37 37 H 0.96997 * 120.00146 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47568 * 269.99949 * 23 22 12 39 39 H 1.09002 * 109.47528 * 29.99975 * 23 22 12 40 40 H 1.08998 * 109.46953 * 150.00240 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.4274 -1.6844 -1.4363 6 7 3.1605 -2.9529 -1.4358 7 6 3.5851 -3.4863 -2.5983 8 8 3.3555 -2.9172 -3.6481 9 6 4.3224 -4.7631 -2.5978 10 6 4.6664 -5.5324 -1.4638 11 7 5.3104 -6.5901 -1.8739 12 7 5.4155 -6.5443 -3.2685 13 6 6.0741 -7.5459 -4.1107 14 6 7.5258 -7.1806 -4.2838 15 1 7.9185 -6.2910 -3.8139 16 6 8.3527 -7.9820 -5.0422 17 7 7.8743 -9.0649 -5.6148 18 14 10.1520 -7.5287 -5.2573 19 1 10.9528 -8.1535 -4.1740 20 1 10.6322 -8.0198 -6.5740 21 1 10.3015 -6.0526 -5.1951 22 6 4.8110 -5.4276 -3.7046 23 6 4.6890 -4.9814 -5.1388 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 2.2451 1.6198 -1.0276 27 1 1.4743 2.0648 0.5138 28 1 3.0158 1.1748 0.5139 29 1 1.4386 -2.0852 0.4352 30 1 2.9742 -1.1985 0.5899 31 1 3.0523 -0.9043 -1.8710 32 1 1.5167 -1.7910 -2.0257 33 1 3.3396 -3.4092 -0.5987 34 1 4.4344 -5.2889 -0.4375 35 1 5.9997 -8.5247 -3.6368 36 1 5.5883 -7.5766 -5.0860 37 1 8.4559 -9.6286 -6.1486 38 1 5.5461 -4.3610 -5.4006 39 1 4.6605 -5.8550 -5.7901 40 1 3.7721 -4.4053 -5.2633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331368031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = 31.088209 kcal Electronic energy + Delta-G solvation = -20620.842222 eV Core-core repulsion = 17436.864718 eV Total energy + Delta-G solvation = -3183.977505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76460 -38.87993 -36.92573 -34.28907 -33.83084 -32.07970 -31.17343 -29.65528 -27.57741 -27.20277 -26.58249 -23.88877 -23.06856 -21.77009 -19.96185 -19.08895 -18.47855 -17.02737 -16.74788 -15.82994 -15.65696 -15.19581 -14.79147 -14.55391 -14.47728 -13.96291 -13.95322 -13.53267 -13.04968 -12.98033 -12.57854 -12.41644 -12.13836 -12.08360 -12.00164 -11.76469 -11.46410 -11.43917 -11.28834 -11.11456 -10.88474 -10.36773 -10.17177 -9.93176 -9.44191 -9.29040 -8.93334 -8.70883 -8.57863 -7.89730 -6.33391 -4.41174 1.90366 2.21092 2.80812 3.18426 3.19968 3.24955 3.30991 3.60313 3.94664 4.24573 4.56196 4.62228 4.84061 5.00796 5.03310 5.14309 5.26555 5.28841 5.37107 5.38858 5.58527 5.62069 5.67505 5.75808 5.77746 5.87754 5.99382 6.14443 6.31478 6.43751 6.55722 6.56815 6.65282 6.80934 6.91386 7.16952 7.56549 7.75865 7.77636 7.80718 8.38791 8.62833 8.65534 9.25695 10.74856 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034762 B = 0.003059 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.284247 B = 9152.492452 C = 9249.710403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.098 4.098 5 C 0.130 3.870 6 N -0.737 5.737 7 C 0.603 3.397 8 O -0.556 6.556 9 C -0.333 4.333 10 C 0.057 3.943 11 N -0.296 5.296 12 N -0.314 5.314 13 C 0.251 3.749 14 C -0.540 4.540 15 H 0.065 0.935 16 C 0.067 3.933 17 N -0.890 5.890 18 Si 0.908 3.092 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.165 3.835 23 C -0.093 4.093 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.398 0.602 34 H 0.175 0.825 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.269 0.731 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 14.567 9.694 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.122 4.122 3 C -0.178 4.178 4 C -0.136 4.136 5 C 0.007 3.993 6 N -0.389 5.389 7 C 0.394 3.606 8 O -0.436 6.436 9 C -0.349 4.349 10 C -0.130 4.130 11 N -0.116 5.116 12 N -0.091 5.091 13 C 0.134 3.866 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.196 1.196 22 C 0.028 3.972 23 C -0.151 4.151 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.192 0.808 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.062 13.580 9.091 19.734 hybrid contribution 0.714 0.574 0.183 0.935 sum -10.348 14.155 9.274 19.835 Atomic orbital electron populations 1.23732 0.95213 1.02001 1.02080 1.21584 0.95329 0.95351 0.99946 1.20891 1.00145 0.94376 1.02408 1.20909 1.00707 0.95166 0.96829 1.21173 0.96563 0.85820 0.95786 1.45736 1.59460 1.24410 1.09314 1.17310 0.77108 0.83318 0.82913 1.90690 1.58559 1.63074 1.31257 1.19683 1.20125 1.01980 0.93081 1.23713 0.97889 0.92867 0.98516 1.77133 1.21569 1.22265 0.90633 1.49368 1.37890 1.17374 1.04491 1.19854 0.92704 0.85816 0.88246 1.21248 0.92928 1.10861 1.32769 0.91667 1.24925 0.99547 0.94483 0.94717 1.69912 1.36619 1.13863 1.32333 0.86320 0.83484 0.79013 0.77693 1.20251 1.20779 1.19586 1.21478 0.91776 0.87324 0.96630 1.20569 1.04307 1.01920 0.88281 0.88362 0.88412 0.91203 0.91885 0.91734 0.90603 0.90486 0.91640 0.91671 0.76851 0.80781 0.92520 0.92548 0.92110 0.89840 0.90880 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 13.89 29.01 0.40 -1.02 16 2 C -0.12 -0.94 5.31 -101.07 -0.54 -1.47 16 3 C -0.12 -0.82 10.03 36.01 0.36 -0.46 16 4 C -0.10 -0.77 5.49 -27.88 -0.15 -0.92 16 5 C 0.13 1.40 5.66 -4.04 -0.02 1.37 16 6 N -0.74 -9.09 5.55 -61.38 -0.34 -9.43 16 7 C 0.60 10.18 7.81 -12.52 -0.10 10.08 16 8 O -0.56 -10.85 14.84 5.28 0.08 -10.77 16 9 C -0.33 -6.16 6.13 -105.07 -0.64 -6.80 16 10 C 0.06 1.00 11.50 -16.98 -0.20 0.80 16 11 N -0.30 -6.40 12.50 30.86 0.39 -6.01 16 12 N -0.31 -7.17 3.56 -57.77 -0.21 -7.37 16 13 C 0.25 6.29 5.97 -5.19 -0.03 6.25 16 14 C -0.54 -14.61 9.39 -34.44 -0.32 -14.94 16 15 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 16 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -24.67 13.29 55.43 0.74 -23.94 16 18 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.17 3.41 7.01 -81.61 -0.57 2.84 16 23 C -0.09 -1.71 9.57 36.01 0.34 -1.36 16 24 H 0.10 0.69 7.99 -52.49 -0.42 0.27 16 25 H 0.10 0.62 8.04 -52.49 -0.42 0.20 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.37 8.06 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.08 0.54 7.99 -51.93 -0.41 0.12 16 30 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 3.86 7.43 -40.82 -0.30 3.56 16 34 H 0.18 2.15 7.50 -52.49 -0.39 1.75 16 35 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 40 H 0.09 1.65 6.50 -51.93 -0.34 1.31 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -31.12 344.38 -6.68 -37.80 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.94 Total: 2.60 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.56 Total: -3.91 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.58 Total: -46.75 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.12 -6.68 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331368031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.888 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds