Wall clock time and date at job start Mon Mar 30 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99742 * 2 1 4 4 C 1.50696 * 120.00170 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46779 * 94.99787 * 4 2 1 6 6 N 1.46506 * 109.47041 * 179.97438 * 5 4 2 7 7 C 1.34773 * 119.99968 * 179.97438 * 6 5 4 8 8 O 1.21602 * 119.99987 * 359.73127 * 7 6 5 9 9 C 1.47436 * 119.99867 * 180.02562 * 7 6 5 10 10 C 1.41286 * 126.41299 * 359.41281 * 9 7 6 11 11 N 1.30448 * 108.02337 * 179.87788 * 10 9 7 12 12 N 1.39938 * 108.89467 * 0.38911 * 11 10 9 13 13 C 1.46503 * 125.75356 * 179.75148 * 12 11 10 14 14 C 1.50696 * 109.46974 * 269.99715 * 13 12 11 15 15 H 1.08001 * 120.00163 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99873 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99984 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00024 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47063 * 90.00165 * 18 16 14 20 20 H 1.48501 * 109.47045 * 210.00089 * 18 16 14 21 21 H 1.48501 * 109.46990 * 330.00178 * 18 16 14 22 22 C 1.34259 * 108.48882 * 359.74809 * 12 11 10 23 23 C 1.50699 * 126.28729 * 179.97438 * 22 12 11 24 24 H 1.08000 * 119.99665 * 179.97438 * 1 2 3 25 25 H 1.07992 * 120.00463 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47350 * 269.99993 * 3 2 1 27 27 H 1.09003 * 109.47019 * 29.99989 * 3 2 1 28 28 H 1.08997 * 109.46889 * 149.99626 * 3 2 1 29 29 H 1.08999 * 109.47048 * 335.00514 * 4 2 1 30 30 H 1.08993 * 109.47202 * 214.99980 * 4 2 1 31 31 H 1.09004 * 109.47178 * 60.00383 * 5 4 2 32 32 H 1.08993 * 109.47411 * 300.00065 * 5 4 2 33 33 H 0.97004 * 120.00014 * 0.02562 * 6 5 4 34 34 H 1.08000 * 125.99145 * 0.03887 * 10 9 7 35 35 H 1.09004 * 109.46911 * 29.99927 * 13 12 11 36 36 H 1.09002 * 109.46643 * 149.99548 * 13 12 11 37 37 H 0.96997 * 120.00146 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47568 * 269.99949 * 23 22 12 39 39 H 1.09002 * 109.47528 * 29.99975 * 23 22 12 40 40 H 1.08998 * 109.46953 * 150.00240 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.4274 -1.6844 -1.4363 6 7 3.1605 -2.9529 -1.4358 7 6 3.5851 -3.4863 -2.5983 8 8 3.3555 -2.9172 -3.6481 9 6 4.3224 -4.7631 -2.5978 10 6 4.6664 -5.5324 -1.4638 11 7 5.3104 -6.5901 -1.8739 12 7 5.4155 -6.5443 -3.2685 13 6 6.0741 -7.5459 -4.1107 14 6 7.5258 -7.1806 -4.2838 15 1 7.9185 -6.2910 -3.8139 16 6 8.3527 -7.9820 -5.0422 17 7 7.8743 -9.0649 -5.6148 18 14 10.1520 -7.5287 -5.2573 19 1 10.9528 -8.1535 -4.1740 20 1 10.6322 -8.0198 -6.5740 21 1 10.3015 -6.0526 -5.1951 22 6 4.8110 -5.4276 -3.7046 23 6 4.6890 -4.9814 -5.1388 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 2.2451 1.6198 -1.0276 27 1 1.4743 2.0648 0.5138 28 1 3.0158 1.1748 0.5139 29 1 1.4386 -2.0852 0.4352 30 1 2.9742 -1.1985 0.5899 31 1 3.0523 -0.9043 -1.8710 32 1 1.5167 -1.7910 -2.0257 33 1 3.3396 -3.4092 -0.5987 34 1 4.4344 -5.2889 -0.4375 35 1 5.9997 -8.5247 -3.6368 36 1 5.5883 -7.5766 -5.0860 37 1 8.4559 -9.6286 -6.1486 38 1 5.5461 -4.3610 -5.4006 39 1 4.6605 -5.8550 -5.7901 40 1 3.7721 -4.4053 -5.2633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331368031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:01 Heat of formation + Delta-G solvation = 11.501327 kcal Electronic energy + Delta-G solvation = -20621.691573 eV Core-core repulsion = 17436.864718 eV Total energy + Delta-G solvation = -3184.826856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.30299 -40.15470 -37.68750 -35.83119 -35.26186 -33.80813 -32.75750 -30.67553 -28.97458 -28.16740 -27.96361 -25.49124 -24.35844 -23.06195 -21.31763 -20.59296 -19.24328 -18.85553 -18.30512 -16.97631 -16.77661 -16.64001 -16.27844 -15.97931 -15.47732 -15.28544 -15.05303 -14.65445 -14.31882 -14.08482 -14.00716 -13.83618 -13.68721 -13.57529 -13.09022 -12.97447 -12.84109 -12.70527 -12.52178 -12.31415 -12.11535 -11.92389 -11.85494 -11.70539 -10.80705 -10.76454 -10.26572 -10.09494 -9.90357 -9.42768 -8.38234 -6.54691 0.68536 1.31528 1.33617 1.37344 1.39008 1.48958 1.67016 2.31850 2.42750 2.55965 2.93964 3.74449 3.75813 3.99377 4.03640 4.11409 4.16708 4.26211 4.37997 4.53098 4.62457 4.68268 4.72936 4.79209 4.87206 4.90002 5.01844 5.04996 5.11618 5.13397 5.18414 5.20956 5.48526 5.54296 5.68980 5.74503 5.78401 6.00017 6.04416 6.54344 6.65565 6.85639 7.16426 7.38315 8.69718 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034762 B = 0.003059 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.284247 B = 9152.492452 C = 9249.710403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.089 4.089 5 C 0.132 3.868 6 N -0.716 5.716 7 C 0.603 3.397 8 O -0.586 6.586 9 C -0.331 4.331 10 C 0.080 3.920 11 N -0.337 5.337 12 N -0.339 5.339 13 C 0.267 3.733 14 C -0.556 4.556 15 H 0.052 0.948 16 C 0.023 3.977 17 N -0.917 5.917 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.270 1.270 22 C 0.144 3.856 23 C -0.086 4.086 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.413 0.587 34 H 0.229 0.771 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.274 0.726 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 16.045 11.272 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.135 4.135 3 C -0.179 4.179 4 C -0.127 4.127 5 C 0.008 3.992 6 N -0.368 5.368 7 C 0.392 3.608 8 O -0.468 6.468 9 C -0.347 4.347 10 C -0.106 4.106 11 N -0.156 5.156 12 N -0.116 5.116 13 C 0.148 3.852 14 C -0.594 4.594 15 H 0.070 0.930 16 C -0.178 4.178 17 N -0.555 5.555 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.196 1.196 21 H -0.194 1.194 22 C 0.008 3.992 23 C -0.144 4.144 24 H 0.119 0.881 25 H 0.124 0.876 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.250 0.750 34 H 0.245 0.755 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.241 15.071 10.713 21.640 hybrid contribution 0.636 0.201 -0.228 0.705 sum -10.605 15.272 10.486 21.346 Atomic orbital electron populations 1.23898 0.95291 1.02600 1.01278 1.21696 0.95578 0.95617 1.00584 1.20916 1.00455 0.94258 1.02319 1.20847 1.01525 0.95565 0.94714 1.21258 0.95593 0.84495 0.97822 1.45574 1.57978 1.24607 1.08603 1.17158 0.77145 0.82774 0.83724 1.90678 1.59777 1.63674 1.32689 1.19970 1.19449 1.02489 0.92775 1.24530 0.94982 0.90692 1.00442 1.77090 1.23841 1.24599 0.90096 1.49108 1.39533 1.17918 1.05034 1.19370 0.92178 0.85496 0.88139 1.21392 0.94209 1.10634 1.33136 0.93010 1.25738 1.03668 0.94249 0.94143 1.69994 1.38208 1.14597 1.32685 0.85341 0.78329 0.78688 0.78080 1.19754 1.19600 1.19419 1.21969 0.91949 0.87155 0.98134 1.20543 1.04553 1.01796 0.87509 0.88109 0.87626 0.91654 0.91050 0.91321 0.89473 0.89268 0.92543 0.92646 0.74971 0.75497 0.95021 0.93201 0.91642 0.89954 0.91051 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 13.89 67.78 0.94 -1.49 16 2 C -0.13 -1.76 5.31 -16.49 -0.09 -1.85 16 3 C -0.12 -1.42 10.03 71.24 0.71 -0.70 16 4 C -0.09 -1.13 5.49 29.85 0.16 -0.96 16 5 C 0.13 2.54 5.66 86.38 0.49 3.03 16 6 N -0.72 -15.71 5.55 -466.36 -2.59 -18.29 16 7 C 0.60 19.33 7.81 86.67 0.68 20.01 16 8 O -0.59 -22.38 14.84 -4.04 -0.06 -22.44 16 9 C -0.33 -11.83 6.13 -20.15 -0.12 -11.95 16 10 C 0.08 2.62 11.50 85.65 0.99 3.61 16 11 N -0.34 -14.42 12.50 -56.28 -0.70 -15.13 16 12 N -0.34 -15.75 3.56 -336.70 -1.20 -16.95 16 13 C 0.27 13.88 5.97 85.63 0.51 14.39 16 14 C -0.56 -30.77 9.39 25.60 0.24 -30.53 16 15 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 16 C 0.02 1.27 5.46 84.65 0.46 1.73 16 17 N -0.92 -51.47 13.29 21.45 0.28 -51.19 16 18 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.14 5.97 7.01 42.14 0.30 6.27 16 23 C -0.09 -3.22 9.57 71.24 0.68 -2.54 16 24 H 0.10 1.19 7.99 -2.91 -0.02 1.17 16 25 H 0.11 1.13 8.04 -2.91 -0.02 1.11 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.69 8.06 -2.39 -0.02 0.67 16 28 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 29 H 0.09 0.93 7.99 -2.39 -0.02 0.91 16 30 H 0.09 0.94 8.10 -2.39 -0.02 0.92 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.41 6.42 7.43 -92.71 -0.69 5.73 16 34 H 0.23 4.58 7.50 -2.91 -0.02 4.56 16 35 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.05 2.60 7.02 -2.39 -0.02 2.58 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.07 2.64 7.05 -2.39 -0.02 2.62 16 40 H 0.10 3.59 6.50 -2.39 -0.02 3.58 16 Total: -1.00 -67.90 344.38 4.06 -63.84 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.35 Total: 16.39 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.95 Total: -1.00 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -4.21 Total: -101.56 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -67.90 4.06 -63.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331368031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.345 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds