Wall clock time and date at job start Mon Mar 30 2020 01:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38549 * 120.38036 * 2 1 4 4 C 1.39245 * 118.35664 * 179.75975 * 3 2 1 5 5 N 1.39958 * 120.48634 * 180.22129 * 4 3 2 6 6 C 1.34780 * 119.99803 * 32.82025 * 5 4 3 7 7 O 1.21285 * 120.00205 * 5.25905 * 6 5 4 8 8 C 1.50700 * 119.99716 * 185.26449 * 6 5 4 9 9 H 1.08998 * 109.47103 * 39.99825 * 8 6 5 10 10 N 1.46896 * 109.47007 * 160.00289 * 8 6 5 11 11 C 1.53005 * 109.46929 * 279.99907 * 8 6 5 12 12 C 1.52992 * 109.46997 * 174.99986 * 11 8 6 13 13 C 1.50703 * 109.47262 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99724 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00229 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99767 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99755 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47048 * 90.00379 * 17 15 13 19 19 H 1.48505 * 109.46833 * 210.00175 * 17 15 13 20 20 H 1.48495 * 109.47311 * 330.00412 * 17 15 13 21 21 C 1.38881 * 119.02454 * 0.47333 * 4 3 2 22 22 N 1.31797 * 120.66303 * 359.79322 * 21 4 3 23 23 C 1.31886 * 121.79430 * 359.97310 * 22 21 4 24 24 C 1.50693 * 119.54064 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.47493 * 269.72196 * 1 2 3 26 26 H 1.08997 * 109.47466 * 149.71719 * 1 2 3 27 27 H 1.09005 * 109.47134 * 29.72302 * 1 2 3 28 28 H 1.07999 * 120.81904 * 359.97438 * 3 2 1 29 29 H 0.96991 * 119.99764 * 212.82482 * 5 4 3 30 30 H 1.00896 * 111.00136 * 59.99552 * 10 8 6 31 31 H 1.00903 * 110.99867 * 183.95538 * 10 8 6 32 32 H 1.08995 * 109.46989 * 295.00184 * 11 8 6 33 33 H 1.09007 * 109.46806 * 55.00039 * 11 8 6 34 34 H 1.08995 * 109.47413 * 299.99939 * 12 11 8 35 35 H 1.09007 * 109.47299 * 60.00355 * 12 11 8 36 36 H 0.97005 * 119.99380 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.66984 * 179.76644 * 21 4 3 38 38 H 1.09006 * 109.47585 * 269.98520 * 24 23 22 39 39 H 1.09008 * 109.46786 * 29.98074 * 24 23 22 40 40 H 1.08997 * 109.47611 * 149.98038 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1952 0.0000 4 6 3.5992 1.1461 0.0051 5 7 4.3514 2.3263 0.0100 6 6 3.8840 3.4207 0.6428 7 8 2.8589 3.3568 1.2879 8 6 4.6351 4.7238 0.5488 9 1 5.0096 4.8548 -0.4664 10 7 3.7337 5.8338 0.8854 11 6 5.8107 4.7067 1.5278 12 6 6.6455 5.9756 1.3446 13 6 7.8031 5.9591 2.3094 14 1 7.9308 5.1265 2.9853 15 6 8.6997 7.0063 2.3284 16 7 8.5444 8.0199 1.5050 17 14 10.1350 6.9854 3.5238 18 1 11.3014 6.3243 2.8853 19 1 10.4948 8.3790 3.8897 20 1 9.7498 6.2363 4.7468 21 6 4.2298 -0.0913 0.0000 22 7 3.5249 -1.2049 -0.0055 23 6 2.2061 -1.1925 -0.0058 24 6 1.4507 -2.4964 -0.0116 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3634 -0.8874 -0.5182 27 1 -0.3634 0.8925 -0.5095 28 1 1.6874 2.1416 -0.0004 29 1 5.2090 2.3567 -0.4421 30 1 3.3729 5.7352 1.8224 31 1 4.1956 6.7232 0.7673 32 1 5.4323 4.6649 2.5492 33 1 6.4318 3.8320 1.3344 34 1 7.0238 6.0173 0.3233 35 1 6.0243 6.8503 1.5380 36 1 9.1750 8.7569 1.5187 37 1 5.3087 -0.1416 0.0001 38 1 1.2687 -2.8064 -1.0407 39 1 2.0388 -3.2592 0.4988 40 1 0.4985 -2.3671 0.5027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331428129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:02 Heat of formation + Delta-G solvation = -22.411255 kcal Electronic energy + Delta-G solvation = -20797.232256 eV Core-core repulsion = 17610.934841 eV Total energy + Delta-G solvation = -3186.297415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98063 -39.49905 -35.90644 -35.24129 -33.83204 -32.93339 -31.81551 -29.98632 -28.34739 -27.28324 -26.20505 -24.06528 -22.98910 -21.74489 -20.69583 -19.96099 -17.88534 -17.19915 -16.67472 -16.31842 -15.90926 -15.15231 -14.75500 -14.52660 -14.46186 -14.32692 -13.60600 -13.41503 -13.24979 -13.16387 -13.08562 -12.88252 -12.56979 -12.31569 -12.19202 -11.83284 -11.73190 -11.18638 -10.99428 -10.77224 -10.73885 -10.15560 -10.07332 -9.69151 -9.47646 -9.31175 -9.19269 -8.49356 -8.34476 -8.20973 -6.13621 -4.17053 0.91569 1.19769 2.66881 2.93930 3.24115 3.31198 3.34461 3.66193 4.24516 4.35355 4.52295 4.74163 4.77270 4.81210 4.99392 5.04646 5.22734 5.32251 5.37102 5.41640 5.43067 5.44192 5.48654 5.60844 5.73110 5.75901 6.00908 6.12171 6.16064 6.26145 6.40558 6.72313 6.77488 7.21119 7.42272 7.45564 7.54937 7.77932 7.83214 7.87191 8.14888 8.25131 8.88810 9.48376 10.97249 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.003190 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.485416 B = 8774.886107 C = 9384.101158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.117 4.117 3 C -0.081 4.081 4 C 0.107 3.893 5 N -0.673 5.673 6 C 0.526 3.474 7 O -0.517 6.517 8 C 0.077 3.923 9 H 0.102 0.898 10 N -0.830 5.830 11 C -0.139 4.139 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.070 3.930 22 N -0.463 5.463 23 C 0.098 3.902 24 C -0.100 4.100 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.416 0.584 30 H 0.346 0.654 31 H 0.357 0.643 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.158 0.842 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.064 -15.533 -5.705 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.108 4.108 4 C 0.010 3.990 5 N -0.319 5.319 6 C 0.314 3.686 7 O -0.390 6.390 8 C -0.038 4.038 9 H 0.120 0.880 10 N -0.363 5.363 11 C -0.179 4.179 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.090 4.090 22 N -0.171 5.171 23 C -0.041 4.041 24 C -0.158 4.158 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.252 0.748 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.737 -16.370 -5.893 22.168 hybrid contribution 1.802 1.244 1.189 2.492 sum -11.935 -15.126 -4.704 19.834 Atomic orbital electron populations 1.20769 0.90143 1.03068 1.02750 1.20618 0.97532 0.92789 1.01005 1.21537 0.92427 0.99282 0.97597 1.18833 0.91899 0.87332 1.00979 1.43599 1.23516 1.09708 1.55068 1.21218 0.85131 0.85176 0.77028 1.90649 1.24429 1.84628 1.39311 1.21487 0.92047 0.88199 1.02096 0.88035 1.58746 1.39174 1.04502 1.33874 1.22421 0.95322 1.02596 0.97543 1.19102 0.94042 0.90579 0.97521 1.21169 1.09943 1.05352 1.19928 0.92680 1.25010 0.98025 0.95438 0.95799 1.69945 1.37029 1.08916 1.37264 0.86574 0.82619 0.77321 0.81405 1.20562 1.21116 1.19861 1.22551 1.00270 0.86090 1.00077 1.67444 1.07707 1.30115 1.11868 1.21055 0.89682 0.94992 0.98343 1.20678 0.99164 0.93153 1.02768 0.90727 0.90944 0.91233 0.83556 0.74781 0.84026 0.82682 0.92495 0.92412 0.96229 0.96335 0.92821 0.82466 0.90692 0.90674 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.20 36.00 0.33 -0.59 16 2 C -0.12 -1.36 5.89 -104.51 -0.62 -1.97 16 3 C -0.08 -1.09 8.45 -39.09 -0.33 -1.42 16 4 C 0.11 1.42 6.31 -83.53 -0.53 0.89 16 5 N -0.67 -8.60 5.36 -9.76 -0.05 -8.65 16 6 C 0.53 8.21 6.84 -10.98 -0.08 8.14 16 7 O -0.52 -9.41 13.95 5.55 0.08 -9.33 16 8 C 0.08 1.22 3.21 -68.86 -0.22 1.00 16 9 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 10 N -0.83 -13.42 8.94 -5.65 -0.05 -13.47 16 11 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 12 C 0.02 0.58 4.74 -27.89 -0.13 0.45 16 13 C -0.53 -14.13 9.11 -34.44 -0.31 -14.45 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 17 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 21 C 0.07 0.88 11.12 -17.33 -0.19 0.68 16 22 N -0.46 -6.07 10.26 -9.31 -0.10 -6.17 16 23 C 0.10 1.14 6.78 -82.58 -0.56 0.58 16 24 C -0.10 -0.82 9.36 36.00 0.34 -0.48 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.46 6.71 -51.93 -0.35 0.11 16 27 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.15 2.13 6.49 -52.49 -0.34 1.79 16 29 H 0.42 4.18 8.82 -40.82 -0.36 3.82 16 30 H 0.35 5.69 8.58 -39.29 -0.34 5.36 16 31 H 0.36 5.81 7.55 -39.29 -0.30 5.52 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.07 0.48 6.68 -51.93 -0.35 0.13 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -31.69 334.79 -7.61 -39.31 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.73 Total: 10.52 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.52 Total: -8.36 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.54 Total: -53.17 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.69 -7.61 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331428129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.895 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds