Wall clock time and date at job start Mon Mar 30 2020 01:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38549 * 120.38036 * 2 1 4 4 C 1.39245 * 118.35664 * 179.75975 * 3 2 1 5 5 N 1.39958 * 120.48634 * 180.22129 * 4 3 2 6 6 C 1.34780 * 119.99803 * 32.82025 * 5 4 3 7 7 O 1.21285 * 120.00205 * 5.25905 * 6 5 4 8 8 C 1.50700 * 119.99716 * 185.26449 * 6 5 4 9 9 H 1.08998 * 109.47103 * 39.99825 * 8 6 5 10 10 N 1.46896 * 109.47007 * 160.00289 * 8 6 5 11 11 C 1.53005 * 109.46929 * 279.99907 * 8 6 5 12 12 C 1.52992 * 109.46997 * 174.99986 * 11 8 6 13 13 C 1.50703 * 109.47262 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99724 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00229 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99767 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99755 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47048 * 90.00379 * 17 15 13 19 19 H 1.48505 * 109.46833 * 210.00175 * 17 15 13 20 20 H 1.48495 * 109.47311 * 330.00412 * 17 15 13 21 21 C 1.38881 * 119.02454 * 0.47333 * 4 3 2 22 22 N 1.31797 * 120.66303 * 359.79322 * 21 4 3 23 23 C 1.31886 * 121.79430 * 359.97310 * 22 21 4 24 24 C 1.50693 * 119.54064 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.47493 * 269.72196 * 1 2 3 26 26 H 1.08997 * 109.47466 * 149.71719 * 1 2 3 27 27 H 1.09005 * 109.47134 * 29.72302 * 1 2 3 28 28 H 1.07999 * 120.81904 * 359.97438 * 3 2 1 29 29 H 0.96991 * 119.99764 * 212.82482 * 5 4 3 30 30 H 1.00896 * 111.00136 * 59.99552 * 10 8 6 31 31 H 1.00903 * 110.99867 * 183.95538 * 10 8 6 32 32 H 1.08995 * 109.46989 * 295.00184 * 11 8 6 33 33 H 1.09007 * 109.46806 * 55.00039 * 11 8 6 34 34 H 1.08995 * 109.47413 * 299.99939 * 12 11 8 35 35 H 1.09007 * 109.47299 * 60.00355 * 12 11 8 36 36 H 0.97005 * 119.99380 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.66984 * 179.76644 * 21 4 3 38 38 H 1.09006 * 109.47585 * 269.98520 * 24 23 22 39 39 H 1.09008 * 109.46786 * 29.98074 * 24 23 22 40 40 H 1.08997 * 109.47611 * 149.98038 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1952 0.0000 4 6 3.5992 1.1461 0.0051 5 7 4.3514 2.3263 0.0100 6 6 3.8840 3.4207 0.6428 7 8 2.8589 3.3568 1.2879 8 6 4.6351 4.7238 0.5488 9 1 5.0096 4.8548 -0.4664 10 7 3.7337 5.8338 0.8854 11 6 5.8107 4.7067 1.5278 12 6 6.6455 5.9756 1.3446 13 6 7.8031 5.9591 2.3094 14 1 7.9308 5.1265 2.9853 15 6 8.6997 7.0063 2.3284 16 7 8.5444 8.0199 1.5050 17 14 10.1350 6.9854 3.5238 18 1 11.3014 6.3243 2.8853 19 1 10.4948 8.3790 3.8897 20 1 9.7498 6.2363 4.7468 21 6 4.2298 -0.0913 0.0000 22 7 3.5249 -1.2049 -0.0055 23 6 2.2061 -1.1925 -0.0058 24 6 1.4507 -2.4964 -0.0116 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3634 -0.8874 -0.5182 27 1 -0.3634 0.8925 -0.5095 28 1 1.6874 2.1416 -0.0004 29 1 5.2090 2.3567 -0.4421 30 1 3.3729 5.7352 1.8224 31 1 4.1956 6.7232 0.7673 32 1 5.4323 4.6649 2.5492 33 1 6.4318 3.8320 1.3344 34 1 7.0238 6.0173 0.3233 35 1 6.0243 6.8503 1.5380 36 1 9.1750 8.7569 1.5187 37 1 5.3087 -0.1416 0.0001 38 1 1.2687 -2.8064 -1.0407 39 1 2.0388 -3.2592 0.4988 40 1 0.4985 -2.3671 0.5027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331428129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:02 Heat of formation + Delta-G solvation = -44.736551 kcal Electronic energy + Delta-G solvation = -20798.200354 eV Core-core repulsion = 17610.934841 eV Total energy + Delta-G solvation = -3187.265513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01924 -40.61654 -37.30258 -36.43155 -34.87494 -34.70317 -32.73936 -31.71594 -29.25783 -28.32971 -27.53604 -25.67927 -23.92630 -22.95805 -22.08939 -21.22671 -19.16060 -18.38856 -18.19976 -17.54654 -16.93863 -16.61444 -16.20680 -15.76189 -15.71384 -15.62246 -14.88605 -14.72039 -14.38936 -14.24764 -14.01280 -13.73784 -13.63061 -13.51558 -13.36682 -13.01295 -12.95874 -12.73477 -12.54595 -12.43942 -11.85420 -11.80865 -11.74195 -11.31859 -11.04997 -10.56943 -10.53440 -10.22103 -9.70455 -9.19426 -8.22722 -6.32730 -0.02817 0.22351 1.38968 1.39908 1.45398 1.50525 1.84085 2.39069 2.72950 3.11414 3.39815 3.55179 3.68683 3.81770 3.85514 3.93831 4.07188 4.11502 4.18860 4.49666 4.62060 4.67723 4.74817 4.77405 4.80918 4.82829 4.95218 5.06358 5.09663 5.15762 5.24457 5.38589 5.45878 5.64299 5.78639 5.79758 6.00266 6.20002 6.28772 6.43487 6.82959 6.93207 7.00380 7.36609 8.87972 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.003190 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.485416 B = 8774.886107 C = 9384.101158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.098 4.098 4 C 0.089 3.911 5 N -0.658 5.658 6 C 0.529 3.471 7 O -0.546 6.546 8 C 0.086 3.914 9 H 0.117 0.883 10 N -0.829 5.829 11 C -0.123 4.123 12 C 0.030 3.970 13 C -0.545 4.545 14 H 0.054 0.946 15 C 0.006 3.994 16 N -0.926 5.926 17 Si 0.957 3.043 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.068 3.932 22 N -0.482 5.482 23 C 0.092 3.908 24 C -0.099 4.099 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.428 0.572 30 H 0.345 0.655 31 H 0.356 0.644 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.264 0.736 37 H 0.178 0.822 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.301 -17.299 -5.726 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.123 4.123 3 C -0.126 4.126 4 C -0.008 4.008 5 N -0.305 5.305 6 C 0.318 3.682 7 O -0.421 6.421 8 C -0.030 4.030 9 H 0.135 0.865 10 N -0.361 5.361 11 C -0.163 4.163 12 C -0.007 4.007 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.782 3.218 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.091 4.091 22 N -0.190 5.190 23 C -0.046 4.046 24 C -0.156 4.156 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.267 0.733 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.195 0.805 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.961 -18.167 -5.934 23.668 hybrid contribution 1.822 1.737 1.164 2.773 sum -12.139 -16.430 -4.770 20.978 Atomic orbital electron populations 1.20853 0.87880 1.04351 1.03524 1.20963 0.99242 0.92080 0.99976 1.21603 0.92853 0.99520 0.98630 1.18953 0.92022 0.87559 1.02293 1.43379 1.23829 1.08977 1.54281 1.21023 0.84729 0.85501 0.76991 1.90640 1.25696 1.85049 1.40760 1.21396 0.90993 0.88570 1.02021 0.86496 1.58757 1.39053 1.04555 1.33753 1.22170 0.95824 1.00585 0.97714 1.18968 0.93601 0.92322 0.95836 1.21628 1.11021 1.05292 1.20405 0.92730 1.25840 1.00746 0.95171 0.97478 1.70053 1.38145 1.09580 1.38827 0.85564 0.79490 0.77376 0.79333 1.19706 1.20864 1.19304 1.22852 1.01281 0.85601 0.99414 1.67530 1.08606 1.30302 1.12595 1.21675 0.89545 0.96477 0.96952 1.20797 0.99546 0.91194 1.04087 0.90063 0.88480 0.91177 0.85083 0.73250 0.84217 0.82874 0.93652 0.91224 0.97680 0.97814 0.92723 0.80511 0.89067 0.90722 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.20 71.24 0.66 -0.95 16 2 C -0.12 -2.64 5.89 -19.79 -0.12 -2.76 16 3 C -0.10 -2.63 8.45 22.59 0.19 -2.44 16 4 C 0.09 2.30 6.31 38.24 0.24 2.54 16 5 N -0.66 -16.28 5.36 -303.19 -1.62 -17.90 16 6 C 0.53 16.29 6.84 87.66 0.60 16.89 16 7 O -0.55 -19.92 13.95 -3.04 -0.04 -19.96 16 8 C 0.09 2.67 3.21 44.17 0.14 2.81 16 9 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 10 N -0.83 -26.85 8.94 -171.80 -1.54 -28.39 16 11 C -0.12 -4.55 4.78 30.59 0.15 -4.40 16 12 C 0.03 1.41 4.74 29.85 0.14 1.56 16 13 C -0.55 -29.36 9.11 25.60 0.23 -29.12 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 15 C 0.01 0.34 5.46 84.66 0.46 0.81 16 16 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 17 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C 0.07 1.62 11.12 84.85 0.94 2.56 16 22 N -0.48 -11.97 10.26 -183.38 -1.88 -13.85 16 23 C 0.09 1.99 6.78 42.55 0.29 2.28 16 24 C -0.10 -1.35 9.36 71.23 0.67 -0.68 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 0.93 6.71 -2.39 -0.02 0.92 16 27 H 0.07 1.03 8.09 -2.38 -0.02 1.01 16 28 H 0.13 3.88 6.49 -2.91 -0.02 3.87 16 29 H 0.43 8.06 8.82 -92.71 -0.82 7.24 16 30 H 0.34 11.44 8.58 -89.70 -0.77 10.67 16 31 H 0.36 11.71 7.55 -89.69 -0.68 11.03 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.00 0.18 6.87 -2.38 -0.02 0.16 16 36 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 37 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.09 0.90 6.68 -2.39 -0.02 0.89 16 Total: -1.00 -67.55 334.79 0.64 -66.91 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -1.18 Total: 32.44 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 4.59 Total: -10.91 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -4.76 Total: -113.40 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.04 Total: -19.96 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -67.55 0.64 -66.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331428129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.176 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds