Wall clock time and date at job start Mon Mar 30 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38045 * 126.28945 * 2 1 4 4 C 1.47423 * 126.41952 * 0.02562 * 3 2 1 5 5 O 1.21609 * 119.99817 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99853 * 179.97438 * 6 4 3 8 8 H 1.08995 * 112.84642 * 23.80208 * 7 6 4 9 9 C 1.53779 * 113.61232 * 252.49626 * 7 6 4 10 10 C 1.53785 * 87.07918 * 220.02002 * 9 7 6 11 11 C 1.53774 * 87.08040 * 25.43233 * 10 9 7 12 12 H 1.09000 * 113.61675 * 89.11761 * 11 10 9 13 13 C 1.53005 * 113.69419 * 220.00767 * 11 10 9 14 14 C 1.41295 * 107.16746 * 179.90837 * 3 2 1 15 15 N 1.30450 * 108.02379 * 0.35884 * 14 3 2 16 16 N 1.34263 * 126.28910 * 180.31149 * 2 1 3 17 17 C 1.46494 * 125.75740 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47377 * 89.99299 * 17 16 2 19 19 H 1.08000 * 119.99998 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00290 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00482 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46943 * 60.00127 * 22 20 18 24 24 H 1.48500 * 109.47284 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46901 * 300.00540 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68682 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68783 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68764 * 1 2 3 29 29 H 0.96993 * 120.00050 * 359.97438 * 6 4 3 30 30 H 1.08994 * 113.61475 * 334.56896 * 9 7 6 31 31 H 1.09000 * 113.61630 * 105.47087 * 9 7 6 32 32 H 1.08997 * 113.61155 * 270.88722 * 10 9 7 33 33 H 1.08994 * 113.61184 * 139.98342 * 10 9 7 34 34 H 1.08996 * 109.47395 * 157.53643 * 13 11 10 35 35 H 1.09000 * 109.46698 * 277.54224 * 13 11 10 36 36 H 1.09001 * 109.46408 * 37.53564 * 13 11 10 37 37 H 1.07995 * 125.99172 * 180.11914 * 14 3 2 38 38 H 1.08999 * 109.47200 * 209.99833 * 17 16 2 39 39 H 1.08999 * 109.46981 * 329.99968 * 17 16 2 40 40 H 0.97000 * 120.00294 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7878 0.0006 6 7 2.8000 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 1 1.3614 5.0404 0.4057 9 6 2.5853 5.6233 -1.3441 10 6 3.0181 6.8540 -0.5297 11 6 3.4009 5.8774 0.5947 12 1 4.4264 5.5143 0.5275 13 6 3.0388 6.3787 1.9943 14 6 3.6591 0.6498 0.0022 15 7 3.6341 -0.6544 -0.0044 16 7 2.3017 -1.0822 -0.0059 17 6 1.8501 -2.4758 -0.0129 18 6 1.6946 -2.9463 -1.4361 19 1 1.9109 -2.2746 -2.2536 20 6 1.2771 -4.2346 -1.6946 21 7 1.0142 -5.0529 -0.6991 22 14 1.0850 -4.8182 -3.4587 23 1 2.3909 -4.7171 -4.1585 24 1 0.6272 -6.2308 -3.4657 25 1 0.0838 -3.9702 -4.1542 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 3.7462 3.2973 -0.0005 30 1 3.3879 5.1908 -1.9415 31 1 1.6683 5.7767 -1.9130 32 1 2.1933 7.5175 -0.2697 33 1 3.8697 7.3830 -0.9573 34 1 2.9577 5.5307 2.6743 35 1 3.8150 7.0565 2.3494 36 1 2.0857 6.9061 1.9558 37 1 4.5449 1.2675 0.0045 38 1 2.5849 -3.0984 0.4974 39 1 0.8917 -2.5497 0.5009 40 1 0.7201 -5.9592 -0.8809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332844407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:17 Heat of formation + Delta-G solvation = 35.827615 kcal Electronic energy + Delta-G solvation = -21125.708346 eV Core-core repulsion = 17941.936358 eV Total energy + Delta-G solvation = -3183.771989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79185 -39.78693 -37.85199 -33.95265 -33.26664 -31.98471 -31.07246 -29.96643 -27.57323 -26.67822 -24.90911 -23.36804 -23.15260 -21.79596 -20.15765 -19.67000 -18.77463 -17.01304 -16.76300 -16.44843 -15.17086 -14.92702 -14.65006 -14.42948 -14.22710 -14.00754 -13.58298 -13.37986 -13.25464 -12.71812 -12.55527 -12.47482 -12.04611 -11.87016 -11.79693 -11.76534 -11.45254 -11.30048 -11.12713 -10.87583 -10.61813 -10.45110 -10.36441 -10.14257 -9.95046 -9.33482 -8.84252 -8.70564 -8.57052 -7.89401 -6.33218 -4.41386 2.21017 2.81097 3.20435 3.21122 3.24341 3.30483 3.63388 3.91604 4.24639 4.27573 4.45425 4.65397 4.78016 5.00354 5.11517 5.19158 5.27641 5.30589 5.48011 5.52234 5.59441 5.66263 5.69372 5.79598 5.83391 5.90339 5.97487 6.03402 6.11341 6.23713 6.49840 6.62123 6.73432 6.80545 6.90783 7.17924 7.56578 7.77646 7.78601 7.82839 8.39466 8.63515 8.66997 9.25625 10.74893 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.003486 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.593250 B = 8029.081847 C = 8156.537783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.604 3.396 5 O -0.558 6.558 6 N -0.724 5.724 7 C 0.132 3.868 8 H 0.113 0.887 9 C -0.156 4.156 10 C -0.135 4.135 11 C -0.121 4.121 12 H 0.092 0.908 13 C -0.143 4.143 14 C 0.057 3.943 15 N -0.296 5.296 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.542 4.542 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.397 0.603 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 19.632 2.664 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.349 4.349 4 C 0.395 3.605 5 O -0.437 6.437 6 N -0.375 5.375 7 C 0.027 3.973 8 H 0.131 0.869 9 C -0.195 4.195 10 C -0.173 4.173 11 C -0.141 4.141 12 H 0.110 0.890 13 C -0.200 4.200 14 C -0.130 4.130 15 N -0.116 5.116 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.580 4.580 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.232 0.768 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.192 0.808 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.479 18.339 2.722 18.864 hybrid contribution 0.106 0.136 -0.954 0.969 sum 3.586 18.476 1.769 18.903 Atomic orbital electron populations 1.20616 0.86873 1.04857 1.03236 1.21486 0.94964 0.86520 0.94226 1.19715 0.93130 0.92631 1.29395 1.17357 0.85119 0.83975 0.74089 1.90678 1.16769 1.84488 1.51762 1.45723 1.09521 1.05216 1.77020 1.22546 0.99335 0.79413 0.96044 0.86883 1.23412 1.02127 0.96492 0.97425 1.22814 1.01420 0.96219 0.96864 1.22983 0.99508 0.96556 0.95011 0.88950 1.21725 1.01319 1.01076 0.95883 1.23710 0.96334 0.92622 1.00351 1.77130 0.98675 1.12282 1.23518 1.49370 1.02468 1.08300 1.48994 1.19839 0.96402 0.70951 0.99388 1.21225 1.47582 0.98188 0.91011 0.91695 1.24923 0.94427 0.95943 0.98333 1.69905 1.44396 1.07083 1.31326 0.86377 0.78894 0.77732 0.83503 1.19894 1.20864 1.19821 0.90547 0.89928 0.88601 0.76847 0.89828 0.91062 0.89901 0.91127 0.92289 0.92613 0.92460 0.80839 0.92522 0.92565 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.35 36.01 0.34 -1.46 16 2 C 0.17 3.42 7.01 -81.60 -0.57 2.84 16 3 C -0.33 -6.17 6.13 -105.07 -0.64 -6.81 16 4 C 0.60 10.16 7.81 -12.52 -0.10 10.06 16 5 O -0.56 -10.77 14.43 5.27 0.08 -10.70 16 6 N -0.72 -9.02 5.35 -54.09 -0.29 -9.31 16 7 C 0.13 1.42 3.80 -67.12 -0.26 1.17 16 8 H 0.11 1.42 7.42 -51.93 -0.39 1.03 16 9 C -0.16 -1.46 7.88 -25.92 -0.20 -1.67 16 10 C -0.14 -1.00 7.64 -25.92 -0.20 -1.20 16 11 C -0.12 -0.97 4.11 -89.81 -0.37 -1.34 16 12 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 13 C -0.14 -1.09 9.71 37.16 0.36 -0.73 16 14 C 0.06 1.00 11.50 -16.98 -0.20 0.80 16 15 N -0.30 -6.42 12.50 30.86 0.39 -6.03 16 16 N -0.31 -7.18 3.56 -57.78 -0.21 -7.39 16 17 C 0.25 6.30 5.78 -5.20 -0.03 6.27 16 18 C -0.54 -14.67 9.39 -34.44 -0.32 -15.00 16 19 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 22 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.08 1.57 7.70 -51.93 -0.40 1.18 16 28 H 0.10 1.74 6.48 -51.93 -0.34 1.41 16 29 H 0.40 4.00 7.68 -40.82 -0.31 3.69 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.57 7.97 -51.93 -0.41 0.16 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.42 7.95 -51.93 -0.41 0.01 16 37 H 0.17 2.17 7.50 -52.49 -0.39 1.78 16 38 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.40 7.62 -51.93 -0.40 1.00 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -30.66 337.10 -7.50 -38.16 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.98 Total: 3.62 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.29 Total: -5.34 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.63 Total: -46.67 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.66 -7.50 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332844407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.990 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds