Wall clock time and date at job start Mon Mar 30 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38045 * 126.28945 * 2 1 4 4 C 1.47423 * 126.41952 * 0.02562 * 3 2 1 5 5 O 1.21609 * 119.99817 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99853 * 179.97438 * 6 4 3 8 8 H 1.08995 * 112.84642 * 23.80208 * 7 6 4 9 9 C 1.53779 * 113.61232 * 252.49626 * 7 6 4 10 10 C 1.53785 * 87.07918 * 220.02002 * 9 7 6 11 11 C 1.53774 * 87.08040 * 25.43233 * 10 9 7 12 12 H 1.09000 * 113.61675 * 89.11761 * 11 10 9 13 13 C 1.53005 * 113.69419 * 220.00767 * 11 10 9 14 14 C 1.41295 * 107.16746 * 179.90837 * 3 2 1 15 15 N 1.30450 * 108.02379 * 0.35884 * 14 3 2 16 16 N 1.34263 * 126.28910 * 180.31149 * 2 1 3 17 17 C 1.46494 * 125.75740 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47377 * 89.99299 * 17 16 2 19 19 H 1.08000 * 119.99998 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00290 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00482 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46943 * 60.00127 * 22 20 18 24 24 H 1.48500 * 109.47284 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46901 * 300.00540 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68682 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68783 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68764 * 1 2 3 29 29 H 0.96993 * 120.00050 * 359.97438 * 6 4 3 30 30 H 1.08994 * 113.61475 * 334.56896 * 9 7 6 31 31 H 1.09000 * 113.61630 * 105.47087 * 9 7 6 32 32 H 1.08997 * 113.61155 * 270.88722 * 10 9 7 33 33 H 1.08994 * 113.61184 * 139.98342 * 10 9 7 34 34 H 1.08996 * 109.47395 * 157.53643 * 13 11 10 35 35 H 1.09000 * 109.46698 * 277.54224 * 13 11 10 36 36 H 1.09001 * 109.46408 * 37.53564 * 13 11 10 37 37 H 1.07995 * 125.99172 * 180.11914 * 14 3 2 38 38 H 1.08999 * 109.47200 * 209.99833 * 17 16 2 39 39 H 1.08999 * 109.46981 * 329.99968 * 17 16 2 40 40 H 0.97000 * 120.00294 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7878 0.0006 6 7 2.8000 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 1 1.3614 5.0404 0.4057 9 6 2.5853 5.6233 -1.3441 10 6 3.0181 6.8540 -0.5297 11 6 3.4009 5.8774 0.5947 12 1 4.4264 5.5143 0.5275 13 6 3.0388 6.3787 1.9943 14 6 3.6591 0.6498 0.0022 15 7 3.6341 -0.6544 -0.0044 16 7 2.3017 -1.0822 -0.0059 17 6 1.8501 -2.4758 -0.0129 18 6 1.6946 -2.9463 -1.4361 19 1 1.9109 -2.2746 -2.2536 20 6 1.2771 -4.2346 -1.6946 21 7 1.0142 -5.0529 -0.6991 22 14 1.0850 -4.8182 -3.4587 23 1 2.3909 -4.7171 -4.1585 24 1 0.6272 -6.2308 -3.4657 25 1 0.0838 -3.9702 -4.1542 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 3.7462 3.2973 -0.0005 30 1 3.3879 5.1908 -1.9415 31 1 1.6683 5.7767 -1.9130 32 1 2.1933 7.5175 -0.2697 33 1 3.8697 7.3830 -0.9573 34 1 2.9577 5.5307 2.6743 35 1 3.8150 7.0565 2.3494 36 1 2.0857 6.9061 1.9558 37 1 4.5449 1.2675 0.0045 38 1 2.5849 -3.0984 0.4974 39 1 0.8917 -2.5497 0.5009 40 1 0.7201 -5.9592 -0.8809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332844407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:16 Heat of formation + Delta-G solvation = 16.629793 kcal Electronic energy + Delta-G solvation = -21126.540826 eV Core-core repulsion = 17941.936358 eV Total energy + Delta-G solvation = -3184.604469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31243 -40.77512 -39.00784 -35.83025 -34.56209 -33.64645 -32.69924 -30.62340 -29.28953 -28.27907 -26.03295 -25.08804 -23.92430 -23.11161 -21.26432 -21.00846 -20.06196 -18.86550 -18.29498 -17.49491 -16.82661 -16.38824 -16.16741 -15.59525 -15.49136 -15.20778 -14.88051 -14.45393 -14.23279 -14.06864 -14.04260 -13.66934 -13.60295 -13.55271 -13.10624 -12.96665 -12.71061 -12.61678 -12.46551 -12.30764 -12.02668 -11.88530 -11.69170 -11.30547 -11.17328 -10.76895 -10.71282 -10.26382 -9.94567 -9.41559 -8.38536 -6.55445 0.68423 1.32896 1.38404 1.38782 1.47462 1.66370 2.31660 2.45081 2.55338 2.93452 3.56388 3.74780 3.75295 3.78919 3.97524 4.03345 4.14413 4.23020 4.53011 4.58443 4.64090 4.64704 4.77239 4.80796 4.89333 4.92449 4.99352 5.05097 5.07484 5.14671 5.17331 5.27400 5.37923 5.47802 5.49499 5.66664 5.73957 5.78518 6.04454 6.53669 6.68852 6.85760 7.15835 7.41220 8.69155 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.003486 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.593250 B = 8029.081847 C = 8156.537783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.144 3.856 3 C -0.332 4.332 4 C 0.603 3.397 5 O -0.587 6.587 6 N -0.705 5.705 7 C 0.116 3.884 8 H 0.092 0.908 9 C -0.156 4.156 10 C -0.124 4.124 11 C -0.109 4.109 12 H 0.108 0.892 13 C -0.143 4.143 14 C 0.080 3.920 15 N -0.337 5.337 16 N -0.339 5.339 17 C 0.268 3.732 18 C -0.558 4.558 19 H 0.052 0.948 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.267 1.267 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.412 0.588 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.227 0.773 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 21.717 1.975 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.008 3.992 3 C -0.347 4.347 4 C 0.393 3.607 5 O -0.469 6.469 6 N -0.355 5.355 7 C 0.012 3.988 8 H 0.110 0.890 9 C -0.195 4.195 10 C -0.161 4.161 11 C -0.128 4.128 12 H 0.126 0.874 13 C -0.201 4.201 14 C -0.107 4.107 15 N -0.156 5.156 16 N -0.116 5.116 17 C 0.149 3.851 18 C -0.596 4.596 19 H 0.070 0.930 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.795 3.205 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.192 1.192 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.248 0.752 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.243 0.757 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.793 20.467 2.043 21.119 hybrid contribution -0.258 -0.368 -0.692 0.826 sum 4.535 20.098 1.350 20.648 Atomic orbital electron populations 1.20575 0.86015 1.04184 1.03993 1.21977 0.95926 0.86790 0.94506 1.20013 0.93337 0.93161 1.28182 1.17205 0.85238 0.83967 0.74305 1.90666 1.18133 1.84758 1.53344 1.45602 1.09619 1.05199 1.75059 1.22795 0.99525 0.78625 0.97881 0.88986 1.23422 1.01968 0.97400 0.96707 1.22782 1.02139 0.95500 0.95723 1.22968 0.99229 0.95345 0.95276 0.87359 1.21734 1.01912 1.00965 0.95441 1.24506 0.97623 0.91579 0.97012 1.77084 0.98326 1.14467 1.25751 1.49106 1.03384 1.07728 1.51369 1.19350 0.95236 0.72388 0.98114 1.21379 1.48132 0.98550 0.91570 0.93012 1.25738 0.93764 0.95852 1.02381 1.69989 1.44704 1.07490 1.33264 0.85400 0.78854 0.77694 0.78546 1.19768 1.19696 1.19163 0.89111 0.91224 0.88373 0.75155 0.89227 0.92134 0.89471 0.89342 0.93384 0.91046 0.92552 0.75666 0.95035 0.93262 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.38 9.35 71.24 0.67 -2.72 16 2 C 0.14 6.02 7.01 42.14 0.30 6.31 16 3 C -0.33 -11.97 6.13 -20.15 -0.12 -12.09 16 4 C 0.60 19.59 7.81 86.66 0.68 20.26 16 5 O -0.59 -22.53 14.43 -4.06 -0.06 -22.58 16 6 N -0.70 -15.94 5.35 -443.30 -2.37 -18.31 16 7 C 0.12 2.29 3.80 45.51 0.17 2.46 16 8 H 0.09 2.25 7.42 -2.39 -0.02 2.23 16 9 C -0.16 -2.59 7.88 31.12 0.25 -2.34 16 10 C -0.12 -1.44 7.64 31.12 0.24 -1.21 16 11 C -0.11 -1.41 4.11 -10.27 -0.04 -1.45 16 12 H 0.11 1.11 8.12 -2.39 -0.02 1.09 16 13 C -0.14 -1.83 9.71 71.98 0.70 -1.13 16 14 C 0.08 2.64 11.50 85.65 0.99 3.63 16 15 N -0.34 -14.56 12.50 -56.27 -0.70 -15.26 16 16 N -0.34 -15.85 3.56 -336.71 -1.20 -17.05 16 17 C 0.27 14.00 5.78 85.63 0.50 14.50 16 18 C -0.56 -31.07 9.39 25.60 0.24 -30.83 16 19 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 20 C 0.02 1.31 5.46 84.65 0.46 1.78 16 21 N -0.92 -51.62 13.29 21.45 0.28 -51.33 16 22 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.07 2.77 7.70 -2.39 -0.02 2.75 16 28 H 0.10 3.63 6.48 -2.38 -0.02 3.62 16 29 H 0.41 6.85 7.68 -92.71 -0.71 6.13 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 0.97 7.97 -2.39 -0.02 0.95 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.73 7.95 -2.39 -0.02 0.71 16 37 H 0.23 4.72 7.50 -2.91 -0.02 4.69 16 38 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 2.58 7.62 -2.39 -0.02 2.56 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -67.66 337.10 3.32 -64.34 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.33 Total: 18.17 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.01 Total: -2.83 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -3.99 Total: -101.96 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.06 Total: -22.58 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.66 3.32 -64.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332844407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.971 kcal (2) G-P(sol) polarization free energy of solvation -67.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds