Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38045 * 126.29186 * 2 1 4 4 C 1.47434 * 126.41434 * 359.75509 * 3 2 1 5 5 O 1.21611 * 119.99828 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00034 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99642 * 179.97438 * 6 4 3 8 8 H 1.08993 * 112.85201 * 336.20259 * 7 6 4 9 9 C 1.53789 * 113.61043 * 107.51191 * 7 6 4 10 10 C 1.53775 * 87.08322 * 89.11258 * 9 7 6 11 11 C 1.53782 * 113.61056 * 205.00326 * 7 6 4 12 12 H 1.09005 * 113.61175 * 156.34222 * 11 7 6 13 13 C 1.52997 * 113.61664 * 25.52226 * 11 7 6 14 14 C 1.41284 * 107.17463 * 180.02562 * 3 2 1 15 15 N 1.30451 * 108.02018 * 0.02562 * 14 3 2 16 16 N 1.34258 * 126.29139 * 180.02562 * 2 1 3 17 17 C 1.46492 * 125.75601 * 359.97438 * 16 2 1 18 18 C 1.50705 * 109.47006 * 89.99677 * 17 16 2 19 19 H 1.08000 * 120.00217 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99723 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00228 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99616 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47433 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47209 * 119.99830 * 22 20 18 25 25 H 1.48507 * 109.46941 * 239.99382 * 22 20 18 26 26 H 1.08998 * 109.46868 * 89.97528 * 1 2 3 27 27 H 1.08994 * 109.47041 * 209.97427 * 1 2 3 28 28 H 1.09000 * 109.47478 * 329.97752 * 1 2 3 29 29 H 0.97001 * 120.00327 * 0.02562 * 6 4 3 30 30 H 1.08997 * 113.60880 * 203.66007 * 9 7 6 31 31 H 1.08999 * 113.61264 * 334.56009 * 9 7 6 32 32 H 1.09000 * 113.61483 * 270.88269 * 10 9 7 33 33 H 1.08998 * 113.69039 * 139.99110 * 10 9 7 34 34 H 1.08995 * 109.47323 * 59.99899 * 13 11 7 35 35 H 1.09007 * 109.46988 * 180.02562 * 13 11 7 36 36 H 1.09000 * 109.46974 * 299.99229 * 13 11 7 37 37 H 1.08001 * 125.99432 * 179.97438 * 14 3 2 38 38 H 1.08993 * 109.47378 * 209.99671 * 17 16 2 39 39 H 1.09001 * 109.47475 * 330.00309 * 17 16 2 40 40 H 0.96999 * 120.00348 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0051 5 8 0.6995 2.7878 -0.0094 6 7 2.7999 3.5107 -0.0039 7 6 2.3643 4.9095 -0.0095 8 1 1.3627 5.0393 -0.4193 9 6 2.5803 5.6273 1.3333 10 6 3.9786 6.0050 0.8168 11 6 3.4029 5.8757 -0.6033 12 1 2.9706 6.8007 -0.9851 13 6 4.3594 5.2126 -1.5965 14 6 3.6590 0.6500 -0.0006 15 7 3.6340 -0.6543 -0.0015 16 7 2.3016 -1.0821 -0.0005 17 6 1.8501 -2.4757 -0.0006 18 6 1.6947 -2.9533 -1.4215 19 1 1.9111 -2.2857 -2.2423 20 6 1.2762 -4.2427 -1.6735 21 7 1.0132 -5.0559 -0.6740 22 14 1.0843 -4.8349 -3.4347 23 1 1.4404 -3.7361 -4.3681 24 1 1.9830 -5.9939 -3.6680 25 1 -0.3237 -5.2454 -3.6682 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5142 29 1 3.7461 3.2974 -0.0001 30 1 1.9232 6.4843 1.4809 31 1 2.5985 4.9540 2.1903 32 1 4.7440 5.2638 1.0468 33 1 4.2813 7.0199 1.0745 34 1 3.7896 4.7968 -2.4274 35 1 5.0635 5.9545 -1.9734 36 1 4.9070 4.4142 -1.0957 37 1 4.5449 1.2677 -0.0012 38 1 2.5849 -3.0958 0.5128 39 1 0.8916 -2.5472 0.5135 40 1 0.7192 -5.9631 -0.8512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332844410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = 40.289525 kcal Electronic energy + Delta-G solvation = -21328.812783 eV Core-core repulsion = 18145.234277 eV Total energy + Delta-G solvation = -3183.578506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84103 -39.95009 -37.79239 -33.94079 -33.03341 -31.97002 -31.06804 -30.04251 -27.54536 -26.67711 -25.09388 -23.40974 -23.11872 -22.14275 -20.14919 -19.29025 -18.68598 -17.27366 -16.77150 -15.74571 -15.46168 -14.94343 -14.72491 -14.50304 -14.27529 -14.10089 -13.63439 -13.53408 -13.27426 -12.97880 -12.57573 -12.42823 -12.09558 -11.84470 -11.77689 -11.65128 -11.46941 -11.10747 -11.08236 -10.90653 -10.51538 -10.37236 -10.28979 -10.17392 -9.91154 -9.38227 -8.88416 -8.71625 -8.58265 -7.90583 -6.33777 -4.41450 2.19932 2.79943 3.16891 3.17184 3.25126 3.31681 3.56982 3.90294 4.24403 4.28541 4.47317 4.70984 4.78791 4.99786 5.09595 5.20083 5.26801 5.32753 5.49342 5.54349 5.60562 5.66615 5.74915 5.82382 5.83123 5.89424 5.94635 6.08601 6.14169 6.16010 6.43964 6.58506 6.73656 6.80874 6.91223 7.16408 7.56492 7.76586 7.77435 7.81059 8.38252 8.63214 8.65849 9.25516 10.74510 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031531 B = 0.003691 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.794274 B = 7584.151643 C = 7721.731073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.333 4.333 4 C 0.606 3.394 5 O -0.556 6.556 6 N -0.715 5.715 7 C 0.130 3.870 8 H 0.099 0.901 9 C -0.156 4.156 10 C -0.138 4.138 11 C -0.122 4.122 12 H 0.098 0.902 13 C -0.142 4.142 14 C 0.057 3.943 15 N -0.295 5.295 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.397 0.603 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.174 0.826 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 18.995 2.161 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.396 3.604 5 O -0.435 6.435 6 N -0.366 5.366 7 C 0.023 3.977 8 H 0.117 0.883 9 C -0.195 4.195 10 C -0.175 4.175 11 C -0.141 4.141 12 H 0.116 0.884 13 C -0.200 4.200 14 C -0.130 4.130 15 N -0.115 5.115 16 N -0.091 5.091 17 C 0.133 3.867 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.205 1.205 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.233 0.767 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.191 0.809 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.094 17.709 2.207 18.309 hybrid contribution 0.083 0.161 -0.903 0.921 sum 4.177 17.870 1.303 18.398 Atomic orbital electron populations 1.20567 0.86806 1.03764 1.03926 1.21478 0.94966 0.86527 0.94204 1.19668 0.93117 0.92500 1.29544 1.17319 0.85030 0.83868 0.74143 1.90686 1.16728 1.84423 1.51629 1.45401 1.09620 1.04555 1.77057 1.21783 0.98926 0.80776 0.96176 0.88262 1.23355 0.97106 1.00651 0.98349 1.23017 0.97064 1.01683 0.95774 1.22932 0.96962 0.99063 0.95183 0.88380 1.21658 0.98903 1.00279 0.99136 1.23695 0.96303 0.92637 1.00369 1.77135 0.98645 1.12243 1.23510 1.49361 1.02469 1.08299 1.48932 1.19858 0.96416 0.70922 0.99466 1.21292 1.47288 0.98159 0.91021 0.91603 1.24926 0.94452 0.95997 0.98312 1.69918 1.44583 1.07139 1.31071 0.86270 0.77970 0.78839 0.83447 1.19526 1.20562 1.20536 0.89837 0.90885 0.88826 0.76748 0.89522 0.90984 0.90180 0.91498 0.92098 0.92560 0.92620 0.80907 0.92516 0.92541 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.56 36.00 0.34 -1.35 16 2 C 0.17 3.40 7.01 -81.60 -0.57 2.83 16 3 C -0.33 -6.13 6.13 -105.07 -0.64 -6.77 16 4 C 0.61 10.13 7.81 -12.52 -0.10 10.04 16 5 O -0.56 -10.68 14.44 5.27 0.08 -10.60 16 6 N -0.71 -8.90 4.76 -54.08 -0.26 -9.16 16 7 C 0.13 1.40 4.19 -67.11 -0.28 1.12 16 8 H 0.10 1.25 7.46 -51.93 -0.39 0.86 16 9 C -0.16 -1.43 7.88 -25.92 -0.20 -1.64 16 10 C -0.14 -1.05 7.51 -25.92 -0.19 -1.24 16 11 C -0.12 -1.00 4.32 -89.81 -0.39 -1.38 16 12 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.14 -1.14 9.11 37.16 0.34 -0.81 16 14 C 0.06 0.99 11.50 -16.98 -0.20 0.80 16 15 N -0.30 -6.37 12.50 30.86 0.39 -5.98 16 16 N -0.31 -7.13 3.56 -57.78 -0.21 -7.34 16 17 C 0.25 6.26 5.97 -5.20 -0.03 6.23 16 18 C -0.54 -14.58 9.39 -34.44 -0.32 -14.90 16 19 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 22 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 28 H 0.09 1.64 6.51 -51.93 -0.34 1.30 16 29 H 0.40 4.13 6.13 -40.82 -0.25 3.88 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.60 7.97 -51.93 -0.41 0.18 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.43 6.63 -51.93 -0.34 0.08 16 37 H 0.17 2.17 7.50 -52.49 -0.39 1.78 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -30.48 332.78 -7.40 -37.89 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.79 Total: 3.61 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.35 Total: -5.37 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.66 Total: -46.37 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.48 -7.40 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332844410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.176 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds