Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38045 * 126.29186 * 2 1 4 4 C 1.47434 * 126.41434 * 359.75509 * 3 2 1 5 5 O 1.21611 * 119.99828 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00034 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99642 * 179.97438 * 6 4 3 8 8 H 1.08993 * 112.85201 * 336.20259 * 7 6 4 9 9 C 1.53789 * 113.61043 * 107.51191 * 7 6 4 10 10 C 1.53775 * 87.08322 * 89.11258 * 9 7 6 11 11 C 1.53782 * 113.61056 * 205.00326 * 7 6 4 12 12 H 1.09005 * 113.61175 * 156.34222 * 11 7 6 13 13 C 1.52997 * 113.61664 * 25.52226 * 11 7 6 14 14 C 1.41284 * 107.17463 * 180.02562 * 3 2 1 15 15 N 1.30451 * 108.02018 * 0.02562 * 14 3 2 16 16 N 1.34258 * 126.29139 * 180.02562 * 2 1 3 17 17 C 1.46492 * 125.75601 * 359.97438 * 16 2 1 18 18 C 1.50705 * 109.47006 * 89.99677 * 17 16 2 19 19 H 1.08000 * 120.00217 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99723 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00228 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99616 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47433 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47209 * 119.99830 * 22 20 18 25 25 H 1.48507 * 109.46941 * 239.99382 * 22 20 18 26 26 H 1.08998 * 109.46868 * 89.97528 * 1 2 3 27 27 H 1.08994 * 109.47041 * 209.97427 * 1 2 3 28 28 H 1.09000 * 109.47478 * 329.97752 * 1 2 3 29 29 H 0.97001 * 120.00327 * 0.02562 * 6 4 3 30 30 H 1.08997 * 113.60880 * 203.66007 * 9 7 6 31 31 H 1.08999 * 113.61264 * 334.56009 * 9 7 6 32 32 H 1.09000 * 113.61483 * 270.88269 * 10 9 7 33 33 H 1.08998 * 113.69039 * 139.99110 * 10 9 7 34 34 H 1.08995 * 109.47323 * 59.99899 * 13 11 7 35 35 H 1.09007 * 109.46988 * 180.02562 * 13 11 7 36 36 H 1.09000 * 109.46974 * 299.99229 * 13 11 7 37 37 H 1.08001 * 125.99432 * 179.97438 * 14 3 2 38 38 H 1.08993 * 109.47378 * 209.99671 * 17 16 2 39 39 H 1.09001 * 109.47475 * 330.00309 * 17 16 2 40 40 H 0.96999 * 120.00348 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0051 5 8 0.6995 2.7878 -0.0094 6 7 2.7999 3.5107 -0.0039 7 6 2.3643 4.9095 -0.0095 8 1 1.3627 5.0393 -0.4193 9 6 2.5803 5.6273 1.3333 10 6 3.9786 6.0050 0.8168 11 6 3.4029 5.8757 -0.6033 12 1 2.9706 6.8007 -0.9851 13 6 4.3594 5.2126 -1.5965 14 6 3.6590 0.6500 -0.0006 15 7 3.6340 -0.6543 -0.0015 16 7 2.3016 -1.0821 -0.0005 17 6 1.8501 -2.4757 -0.0006 18 6 1.6947 -2.9533 -1.4215 19 1 1.9111 -2.2857 -2.2423 20 6 1.2762 -4.2427 -1.6735 21 7 1.0132 -5.0559 -0.6740 22 14 1.0843 -4.8349 -3.4347 23 1 1.4404 -3.7361 -4.3681 24 1 1.9830 -5.9939 -3.6680 25 1 -0.3237 -5.2454 -3.6682 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5142 29 1 3.7461 3.2974 -0.0001 30 1 1.9232 6.4843 1.4809 31 1 2.5985 4.9540 2.1903 32 1 4.7440 5.2638 1.0468 33 1 4.2813 7.0199 1.0745 34 1 3.7896 4.7968 -2.4274 35 1 5.0635 5.9545 -1.9734 36 1 4.9070 4.4142 -1.0957 37 1 4.5449 1.2677 -0.0012 38 1 2.5849 -3.0958 0.5128 39 1 0.8916 -2.5472 0.5135 40 1 0.7192 -5.9631 -0.8512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332844410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = 21.615733 kcal Electronic energy + Delta-G solvation = -21329.622539 eV Core-core repulsion = 18145.234277 eV Total energy + Delta-G solvation = -3184.388262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.33902 -40.95214 -38.97544 -35.82874 -34.37727 -33.57073 -32.69287 -30.70106 -29.27156 -28.26532 -26.11498 -25.19142 -23.80704 -23.47229 -21.53477 -20.65886 -19.75391 -18.88355 -18.57247 -17.00679 -16.69266 -16.41699 -16.18082 -15.84536 -15.52334 -15.29159 -14.92531 -14.45486 -14.35055 -14.21910 -14.07487 -13.85843 -13.69040 -13.57836 -13.09173 -12.97090 -12.71352 -12.46837 -12.41492 -12.33428 -11.84045 -11.77712 -11.69156 -11.23534 -11.02731 -10.79268 -10.76729 -10.27422 -9.98809 -9.43347 -8.38659 -6.55018 0.67577 1.31964 1.36042 1.38493 1.49398 1.65100 2.31025 2.36533 2.53679 2.93567 3.56775 3.73446 3.74056 3.78981 4.04354 4.05307 4.12607 4.22916 4.49450 4.57606 4.61500 4.69022 4.75460 4.81261 4.89241 4.93265 5.01371 5.05962 5.11117 5.16209 5.18317 5.21016 5.43499 5.45361 5.48717 5.65177 5.74047 5.78304 6.03740 6.54219 6.65268 6.84247 7.16201 7.38841 8.69514 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031531 B = 0.003691 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.794274 B = 7584.151643 C = 7721.731073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.145 3.855 3 C -0.331 4.331 4 C 0.606 3.394 5 O -0.585 6.585 6 N -0.695 5.695 7 C 0.112 3.888 8 H 0.078 0.922 9 C -0.154 4.154 10 C -0.127 4.127 11 C -0.110 4.110 12 H 0.111 0.889 13 C -0.144 4.144 14 C 0.079 3.921 15 N -0.335 5.335 16 N -0.338 5.338 17 C 0.267 3.733 18 C -0.555 4.555 19 H 0.051 0.949 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.973 3.027 23 H -0.273 1.273 24 H -0.273 1.273 25 H -0.268 1.268 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.410 0.590 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.225 0.775 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 20.998 1.514 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 C -0.346 4.346 4 C 0.395 3.605 5 O -0.466 6.466 6 N -0.346 5.346 7 C 0.006 3.994 8 H 0.096 0.904 9 C -0.192 4.192 10 C -0.165 4.165 11 C -0.129 4.129 12 H 0.129 0.871 13 C -0.202 4.202 14 C -0.108 4.108 15 N -0.155 5.155 16 N -0.115 5.115 17 C 0.148 3.852 18 C -0.593 4.593 19 H 0.070 0.930 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.796 3.204 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.193 1.193 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.247 0.753 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.241 0.759 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.333 19.751 1.571 20.518 hybrid contribution -0.262 -0.317 -0.662 0.779 sum 5.071 19.434 0.909 20.105 Atomic orbital electron populations 1.20541 0.85927 1.03997 1.03900 1.21966 0.95935 0.86767 0.94459 1.19959 0.93320 0.93035 1.28329 1.17147 0.85122 0.83861 0.74336 1.90673 1.18049 1.84694 1.53197 1.45220 1.09599 1.04640 1.75152 1.22044 0.98992 0.80132 0.98215 0.90378 1.23362 0.98718 1.00502 0.96663 1.22989 0.96006 1.02850 0.94617 1.22913 0.95839 0.98461 0.95707 0.87060 1.21686 0.98987 1.00864 0.98649 1.24470 0.97572 0.91618 0.97110 1.77089 0.98308 1.14377 1.25693 1.49100 1.03375 1.07739 1.51257 1.19376 0.95304 0.72343 0.98183 1.21422 1.47873 0.98510 0.91534 0.93042 1.25734 0.93805 0.95925 1.02312 1.69997 1.44865 1.07600 1.32999 0.85287 0.78464 0.78181 0.78435 1.19748 1.19788 1.19341 0.89936 0.91023 0.88074 0.75268 0.88373 0.92244 0.89668 0.89806 0.93513 0.91070 0.92125 0.75866 0.95001 0.93163 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.21 9.56 71.24 0.68 -2.53 16 2 C 0.14 6.03 7.01 42.14 0.30 6.32 16 3 C -0.33 -11.94 6.13 -20.15 -0.12 -12.06 16 4 C 0.61 19.67 7.81 86.67 0.68 20.35 16 5 O -0.58 -22.36 14.44 -4.07 -0.06 -22.42 16 6 N -0.70 -15.93 4.76 -443.28 -2.11 -18.04 16 7 C 0.11 2.22 4.19 45.52 0.19 2.41 16 8 H 0.08 1.91 7.46 -2.39 -0.02 1.89 16 9 C -0.15 -2.47 7.88 31.12 0.25 -2.23 16 10 C -0.13 -1.49 7.51 31.12 0.23 -1.25 16 11 C -0.11 -1.47 4.32 -10.27 -0.04 -1.51 16 12 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 13 C -0.14 -1.89 9.11 71.98 0.66 -1.23 16 14 C 0.08 2.63 11.50 85.65 0.99 3.62 16 15 N -0.34 -14.44 12.50 -56.28 -0.70 -15.14 16 16 N -0.34 -15.73 3.56 -336.72 -1.20 -16.93 16 17 C 0.27 13.87 5.97 85.64 0.51 14.38 16 18 C -0.56 -30.80 9.39 25.60 0.24 -30.56 16 19 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 20 C 0.02 1.28 5.46 84.66 0.46 1.74 16 21 N -0.92 -51.41 13.29 21.45 0.28 -51.12 16 22 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.07 2.65 7.05 -2.39 -0.02 2.63 16 28 H 0.10 3.60 6.51 -2.39 -0.02 3.58 16 29 H 0.41 7.25 6.13 -92.71 -0.57 6.69 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 0.94 7.97 -2.39 -0.02 0.92 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.06 0.72 6.63 -2.39 -0.02 0.70 16 37 H 0.23 4.75 7.50 -2.91 -0.02 4.73 16 38 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 2.62 7.02 -2.39 -0.02 2.60 16 40 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -67.02 332.78 3.73 -63.29 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.48 Total: 18.08 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.01 Total: -2.56 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -3.73 Total: -101.24 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.02 3.73 -63.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332844410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.904 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds