Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32110 * 120.06334 * 2 1 4 4 C 1.32101 * 120.06979 * 179.97438 * 3 2 1 5 5 C 1.38772 * 120.19821 * 0.02562 * 4 3 2 6 6 N 1.31772 * 120.12245 * 359.97438 * 5 4 3 7 7 C 1.33032 * 119.92544 * 359.97438 * 6 5 4 8 8 C 1.48144 * 120.09736 * 180.02562 * 7 6 5 9 9 O 1.21514 * 120.00250 * 103.83700 * 8 7 6 10 10 N 1.34783 * 119.99682 * 283.83160 * 8 7 6 11 11 C 1.46504 * 119.99566 * 184.83614 * 10 8 7 12 12 C 1.50705 * 109.46655 * 90.00727 * 11 10 8 13 13 H 1.07990 * 120.00254 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99649 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99853 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99932 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47211 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47254 * 120.00131 * 16 14 12 19 19 H 1.48504 * 109.47042 * 240.00461 * 16 14 12 20 20 C 1.46490 * 120.00205 * 4.84586 * 10 8 7 21 21 C 1.52998 * 109.47362 * 85.34017 * 20 10 8 22 22 C 1.52998 * 109.47221 * 65.00459 * 21 20 10 23 23 C 1.53007 * 109.47266 * 184.99954 * 21 20 10 24 24 H 1.09001 * 109.47347 * 264.60102 * 1 2 3 25 25 H 1.09003 * 109.47164 * 24.60557 * 1 2 3 26 26 H 1.09008 * 109.47185 * 144.60405 * 1 2 3 27 27 H 1.08006 * 119.90421 * 180.02562 * 4 3 2 28 28 H 1.08005 * 119.94540 * 180.26958 * 5 4 3 29 29 H 1.09000 * 109.47039 * 210.00379 * 11 10 8 30 30 H 1.08997 * 109.47404 * 330.00636 * 11 10 8 31 31 H 0.97003 * 119.99303 * 180.02562 * 15 14 12 32 32 H 1.09004 * 109.47211 * 205.34383 * 20 10 8 33 33 H 1.09003 * 109.47276 * 325.33913 * 20 10 8 34 34 H 1.09001 * 109.47163 * 304.99950 * 21 20 10 35 35 H 1.09003 * 109.46416 * 299.99583 * 22 21 20 36 36 H 1.09001 * 109.47468 * 59.99677 * 22 21 20 37 37 H 1.08998 * 109.47046 * 180.02562 * 22 21 20 38 38 H 1.09007 * 109.46768 * 59.99964 * 23 21 20 39 39 H 1.08998 * 109.46986 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.47402 * 300.00395 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1688 1.1434 0.0000 4 6 3.4898 1.1435 0.0005 5 6 4.1879 -0.0558 0.0005 6 7 3.5356 -1.2007 0.0005 7 6 2.2053 -1.2066 0.0010 8 6 1.4680 -2.4915 0.0016 9 8 0.9478 -2.8931 1.0237 10 7 1.3743 -3.2152 -1.1316 11 6 0.5575 -4.4311 -1.1588 12 6 -0.8510 -4.0810 -1.5646 13 1 -1.1117 -3.0555 -1.7803 14 6 -1.8067 -5.0702 -1.6606 15 7 -1.4892 -6.3190 -1.3974 16 14 -3.5524 -4.6364 -2.1643 17 1 -3.6496 -3.1741 -2.4039 18 1 -3.9041 -5.3659 -3.4090 19 1 -4.4911 -5.0245 -1.0810 20 6 2.0893 -2.7860 -2.3360 21 6 3.5224 -3.3202 -2.2961 22 6 3.4990 -4.8486 -2.3625 23 6 4.3054 -2.7699 -3.4899 24 1 -0.3634 -0.0967 1.0231 25 1 -0.3634 0.9344 -0.4279 26 1 -0.3634 -0.8378 -0.5953 27 1 4.0281 2.0798 0.0009 28 1 5.2680 -0.0509 0.0053 29 1 0.9781 -5.1353 -1.8766 30 1 0.5480 -4.8846 -0.1677 31 1 -2.1616 -7.0149 -1.4653 32 1 1.5809 -3.1749 -3.2184 33 1 2.1085 -1.6969 -2.3785 34 1 4.0023 -3.0040 -1.3699 35 1 2.9412 -5.2406 -1.5119 36 1 3.0190 -5.1648 -3.2887 37 1 4.5199 -5.2292 -2.3335 38 1 4.3220 -1.6810 -3.4426 39 1 5.3265 -3.1502 -3.4611 40 1 3.8255 -3.0860 -4.4161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333886635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = 2.224396 kcal Electronic energy + Delta-G solvation = -22438.613985 eV Core-core repulsion = 19253.384852 eV Total energy + Delta-G solvation = -3185.229133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24993 -38.88629 -36.38386 -34.53982 -33.62873 -32.84726 -32.19922 -28.41386 -27.63797 -26.80778 -25.85265 -24.98301 -22.99499 -22.58439 -20.27340 -19.17951 -17.77055 -17.01912 -16.56608 -16.07916 -15.89483 -14.89158 -14.70740 -14.45610 -14.34544 -14.01241 -13.25135 -13.09286 -12.74697 -12.73897 -12.41501 -12.22532 -12.05396 -12.01329 -11.63751 -11.57184 -11.39008 -11.09701 -11.01729 -10.93062 -10.69808 -10.40428 -10.27827 -10.17060 -9.69875 -9.53909 -9.13365 -8.83960 -8.46681 -7.74411 -6.08418 -4.13707 0.64835 1.09518 3.04994 3.27458 3.35328 3.37753 3.53033 3.66265 4.07080 4.34538 4.42742 4.48897 4.75197 5.08692 5.15499 5.21014 5.23017 5.26896 5.31746 5.44954 5.70694 5.75876 5.83082 5.88764 5.97441 6.08516 6.12622 6.17295 6.20328 6.36248 6.37499 6.67540 6.75565 7.00682 7.20645 7.38030 7.46063 7.72040 7.87164 8.17291 8.25685 8.75778 8.94117 9.51423 10.99583 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.006662 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.452009 B = 4202.116345 C = 5216.506983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.117 3.883 3 N -0.440 5.440 4 C 0.056 3.944 5 C 0.038 3.962 6 N -0.407 5.407 7 C 0.060 3.940 8 C 0.571 3.429 9 O -0.523 6.523 10 N -0.576 5.576 11 C 0.243 3.757 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.121 3.879 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.139 4.139 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.605 11.791 -2.423 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.023 4.023 3 N -0.156 5.156 4 C -0.105 4.105 5 C -0.123 4.123 6 N -0.123 5.123 7 C -0.083 4.083 8 C 0.353 3.647 9 O -0.399 6.399 10 N -0.306 5.306 11 C 0.125 3.875 12 C -0.569 4.569 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.004 4.004 21 C -0.140 4.140 22 C -0.202 4.202 23 C -0.197 4.197 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.187 0.813 28 H 0.189 0.811 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.195 11.320 -1.885 16.031 hybrid contribution -0.734 0.305 -0.330 0.860 sum 10.461 11.625 -2.214 15.795 Atomic orbital electron populations 1.20831 0.86953 1.04378 1.04474 1.22262 0.98672 0.87927 0.93475 1.68361 1.08884 1.28590 1.09721 1.23904 0.90843 0.99867 0.95869 1.23789 1.01854 0.88681 0.97982 1.68483 1.07293 1.29597 1.06902 1.22378 0.91058 0.96249 0.98608 1.17515 0.80183 0.82282 0.84683 1.90795 1.47803 1.69333 1.31957 1.48158 1.46559 1.26870 1.08982 1.19487 0.88792 0.80068 0.99199 1.21452 0.94398 0.94302 1.46719 0.92317 1.24916 0.98948 0.94843 0.95217 1.69941 1.34410 1.00005 1.48682 0.86465 0.84414 0.78551 0.78145 1.19725 1.20957 1.20833 1.21498 0.91852 0.97870 0.89143 1.21702 0.95827 0.96696 0.99781 1.21856 1.00860 0.94753 1.02719 1.21730 0.99778 1.00075 0.98097 0.89193 0.89991 0.89173 0.81287 0.81130 0.93932 0.93619 0.92695 0.89627 0.92963 0.89486 0.91612 0.92738 0.93536 0.93463 0.92778 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.68 36.00 0.35 -1.34 16 2 C 0.12 1.90 6.82 -82.04 -0.56 1.34 16 3 N -0.44 -6.28 10.42 -8.95 -0.09 -6.37 16 4 C 0.06 0.61 11.23 -17.24 -0.19 0.42 16 5 C 0.04 0.44 11.22 -17.38 -0.20 0.24 16 6 N -0.41 -6.36 8.55 -9.61 -0.08 -6.44 16 7 C 0.06 1.07 4.68 -82.84 -0.39 0.68 16 8 C 0.57 12.36 5.85 -12.19 -0.07 12.29 16 9 O -0.52 -13.36 16.66 5.35 0.09 -13.27 16 10 N -0.58 -12.23 2.20 -176.06 -0.39 -12.62 16 11 C 0.24 6.15 4.27 -5.19 -0.02 6.13 16 12 C -0.53 -14.44 9.39 -34.44 -0.32 -14.77 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 16 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.12 2.09 4.63 -4.05 -0.02 2.07 16 21 C -0.12 -1.82 3.02 -90.62 -0.27 -2.09 16 22 C -0.14 -2.28 8.30 37.16 0.31 -1.97 16 23 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 24 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.58 7.29 -51.92 -0.38 1.21 16 27 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 28 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.04 1.08 6.52 -51.93 -0.34 0.74 16 30 H 0.05 1.32 7.36 -51.93 -0.38 0.93 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.09 1.50 8.04 -51.93 -0.42 1.09 16 33 H 0.05 0.85 6.97 -51.93 -0.36 0.49 16 34 H 0.09 1.40 6.28 -51.93 -0.33 1.08 16 35 H 0.06 1.22 6.25 -51.93 -0.32 0.89 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -32.16 333.66 -6.75 -38.91 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.88 Total: 0.29 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.14 Total: 3.33 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.17 Total: -50.53 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.16 -6.75 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333886635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.135 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds