Wall clock time and date at job start Mon Mar 30 2020 02:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32110 * 120.06334 * 2 1 4 4 C 1.32101 * 120.06979 * 179.97438 * 3 2 1 5 5 C 1.38772 * 120.19821 * 0.02562 * 4 3 2 6 6 N 1.31772 * 120.12245 * 359.97438 * 5 4 3 7 7 C 1.33032 * 119.92544 * 359.97438 * 6 5 4 8 8 C 1.48144 * 120.09736 * 180.02562 * 7 6 5 9 9 O 1.21514 * 120.00250 * 103.83700 * 8 7 6 10 10 N 1.34783 * 119.99682 * 283.83160 * 8 7 6 11 11 C 1.46504 * 119.99566 * 184.83614 * 10 8 7 12 12 C 1.50705 * 109.46655 * 90.00727 * 11 10 8 13 13 H 1.07990 * 120.00254 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99649 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99853 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99932 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47211 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47254 * 120.00131 * 16 14 12 19 19 H 1.48504 * 109.47042 * 240.00461 * 16 14 12 20 20 C 1.46490 * 120.00205 * 4.84586 * 10 8 7 21 21 C 1.52998 * 109.47362 * 85.34017 * 20 10 8 22 22 C 1.52998 * 109.47221 * 65.00459 * 21 20 10 23 23 C 1.53007 * 109.47266 * 184.99954 * 21 20 10 24 24 H 1.09001 * 109.47347 * 264.60102 * 1 2 3 25 25 H 1.09003 * 109.47164 * 24.60557 * 1 2 3 26 26 H 1.09008 * 109.47185 * 144.60405 * 1 2 3 27 27 H 1.08006 * 119.90421 * 180.02562 * 4 3 2 28 28 H 1.08005 * 119.94540 * 180.26958 * 5 4 3 29 29 H 1.09000 * 109.47039 * 210.00379 * 11 10 8 30 30 H 1.08997 * 109.47404 * 330.00636 * 11 10 8 31 31 H 0.97003 * 119.99303 * 180.02562 * 15 14 12 32 32 H 1.09004 * 109.47211 * 205.34383 * 20 10 8 33 33 H 1.09003 * 109.47276 * 325.33913 * 20 10 8 34 34 H 1.09001 * 109.47163 * 304.99950 * 21 20 10 35 35 H 1.09003 * 109.46416 * 299.99583 * 22 21 20 36 36 H 1.09001 * 109.47468 * 59.99677 * 22 21 20 37 37 H 1.08998 * 109.47046 * 180.02562 * 22 21 20 38 38 H 1.09007 * 109.46768 * 59.99964 * 23 21 20 39 39 H 1.08998 * 109.46986 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.47402 * 300.00395 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1688 1.1434 0.0000 4 6 3.4898 1.1435 0.0005 5 6 4.1879 -0.0558 0.0005 6 7 3.5356 -1.2007 0.0005 7 6 2.2053 -1.2066 0.0010 8 6 1.4680 -2.4915 0.0016 9 8 0.9478 -2.8931 1.0237 10 7 1.3743 -3.2152 -1.1316 11 6 0.5575 -4.4311 -1.1588 12 6 -0.8510 -4.0810 -1.5646 13 1 -1.1117 -3.0555 -1.7803 14 6 -1.8067 -5.0702 -1.6606 15 7 -1.4892 -6.3190 -1.3974 16 14 -3.5524 -4.6364 -2.1643 17 1 -3.6496 -3.1741 -2.4039 18 1 -3.9041 -5.3659 -3.4090 19 1 -4.4911 -5.0245 -1.0810 20 6 2.0893 -2.7860 -2.3360 21 6 3.5224 -3.3202 -2.2961 22 6 3.4990 -4.8486 -2.3625 23 6 4.3054 -2.7699 -3.4899 24 1 -0.3634 -0.0967 1.0231 25 1 -0.3634 0.9344 -0.4279 26 1 -0.3634 -0.8378 -0.5953 27 1 4.0281 2.0798 0.0009 28 1 5.2680 -0.0509 0.0053 29 1 0.9781 -5.1353 -1.8766 30 1 0.5480 -4.8846 -0.1677 31 1 -2.1616 -7.0149 -1.4653 32 1 1.5809 -3.1749 -3.2184 33 1 2.1085 -1.6969 -2.3785 34 1 4.0023 -3.0040 -1.3699 35 1 2.9412 -5.2406 -1.5119 36 1 3.0190 -5.1648 -3.2887 37 1 4.5199 -5.2292 -2.3335 38 1 4.3220 -1.6810 -3.4426 39 1 5.3265 -3.1502 -3.4611 40 1 3.8255 -3.0860 -4.4161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333886635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:29 Heat of formation + Delta-G solvation = -19.275031 kcal Electronic energy + Delta-G solvation = -22439.546271 eV Core-core repulsion = 19253.384852 eV Total energy + Delta-G solvation = -3186.161419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43130 -40.46589 -37.91170 -35.68636 -35.40168 -34.29584 -33.78926 -30.07286 -29.04077 -28.00581 -27.22518 -26.50793 -24.60979 -23.88038 -21.65687 -20.62092 -18.94968 -18.66280 -18.45040 -17.62901 -17.03164 -16.49771 -16.04962 -15.95280 -15.74996 -15.36990 -14.64736 -14.61178 -14.23497 -13.96326 -13.87140 -13.66590 -13.51346 -13.36960 -13.09319 -12.98333 -12.74149 -12.72723 -12.63544 -12.26464 -12.18582 -12.16339 -11.83849 -11.59370 -11.53973 -11.17483 -10.64108 -10.22723 -10.07709 -9.53642 -8.22695 -6.37357 -0.44683 0.02961 1.37169 1.39172 1.46462 1.52055 2.02329 2.39528 2.55847 2.98602 3.07182 3.13948 3.40284 3.58629 3.86177 3.99101 4.07307 4.16674 4.26321 4.40351 4.49632 4.52539 4.60332 4.64668 4.80866 4.85900 4.94840 4.97488 5.01812 5.04873 5.19337 5.25596 5.32247 5.43129 5.44989 5.58882 5.79143 6.04004 6.14702 6.53434 6.66129 6.70706 7.11883 7.34555 8.85044 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.006662 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.452009 B = 4202.116345 C = 5216.506983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.104 3.896 3 N -0.449 5.449 4 C 0.080 3.920 5 C 0.053 3.947 6 N -0.427 5.427 7 C 0.031 3.969 8 C 0.568 3.432 9 O -0.581 6.581 10 N -0.578 5.578 11 C 0.262 3.738 12 C -0.544 4.544 13 H 0.057 0.943 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.282 1.282 20 C 0.120 3.880 21 C -0.113 4.113 22 C -0.142 4.142 23 C -0.129 4.129 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.225 0.775 28 H 0.222 0.778 29 H 0.036 0.964 30 H -0.002 1.002 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.026 0.974 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.680 14.878 -3.847 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.033 4.033 3 N -0.165 5.165 4 C -0.082 4.082 5 C -0.110 4.110 6 N -0.143 5.143 7 C -0.108 4.108 8 C 0.354 3.646 9 O -0.460 6.460 10 N -0.307 5.307 11 C 0.142 3.858 12 C -0.583 4.583 13 H 0.075 0.925 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.208 1.208 20 C -0.002 4.002 21 C -0.132 4.132 22 C -0.199 4.199 23 C -0.187 4.187 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.078 0.922 27 H 0.241 0.759 28 H 0.238 0.762 29 H 0.054 0.946 30 H 0.016 0.984 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.253 14.404 -3.347 19.857 hybrid contribution -1.172 -0.555 0.148 1.305 sum 12.081 13.850 -3.199 18.654 Atomic orbital electron populations 1.20734 0.87584 1.04231 1.03681 1.22108 0.98640 0.88119 0.94457 1.68454 1.10687 1.27019 1.10296 1.24873 0.89660 1.01967 0.91712 1.24684 1.03899 0.87351 0.95069 1.68407 1.06128 1.32139 1.07628 1.21581 0.92139 0.94175 1.02934 1.18132 0.79567 0.83360 0.83586 1.90734 1.50298 1.71170 1.33819 1.48106 1.46274 1.25678 1.10598 1.18929 0.89183 0.81703 0.95990 1.21720 0.95496 0.94307 1.46739 0.92484 1.25821 1.03336 0.94642 0.95018 1.70064 1.35966 1.01056 1.49505 0.85394 0.78802 0.78791 0.78032 1.18778 1.19568 1.20756 1.21702 0.92818 0.98711 0.86989 1.21637 0.94461 0.95861 1.01279 1.21819 1.01607 0.95643 1.00866 1.21658 1.00042 1.00758 0.96265 0.89897 0.87612 0.92202 0.75860 0.76187 0.94605 0.98422 0.92379 0.90326 0.91543 0.90139 0.95493 0.92848 0.91159 0.92176 0.90955 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.35 9.68 71.23 0.69 -2.66 16 2 C 0.10 3.34 6.82 42.80 0.29 3.63 16 3 N -0.45 -11.42 10.42 -182.23 -1.90 -13.32 16 4 C 0.08 1.34 11.23 84.78 0.95 2.29 16 5 C 0.05 0.96 11.22 84.83 0.95 1.91 16 6 N -0.43 -12.55 8.55 -184.32 -1.58 -14.12 16 7 C 0.03 1.12 4.68 41.88 0.20 1.32 16 8 C 0.57 26.14 5.85 86.87 0.51 26.65 16 9 O -0.58 -32.14 16.66 -3.76 -0.06 -32.21 16 10 N -0.58 -26.09 2.20 -829.23 -1.83 -27.92 16 11 C 0.26 14.34 4.27 85.63 0.37 14.70 16 12 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 13 H 0.06 3.21 7.81 -2.92 -0.02 3.19 16 14 C 0.01 0.64 5.46 84.65 0.46 1.10 16 15 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 16 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 C 0.12 4.24 4.63 86.38 0.40 4.64 16 21 C -0.11 -3.33 3.02 -10.79 -0.03 -3.36 16 22 C -0.14 -4.55 8.30 71.98 0.60 -3.95 16 23 C -0.13 -2.73 9.19 71.98 0.66 -2.07 16 24 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.06 2.25 7.29 -2.38 -0.02 2.23 16 27 H 0.23 1.27 8.06 -2.91 -0.02 1.24 16 28 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.04 1.97 6.52 -2.39 -0.02 1.96 16 30 H 0.00 -0.15 7.36 -2.39 -0.02 -0.17 16 31 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.08 2.83 8.04 -2.39 -0.02 2.82 16 33 H 0.07 2.15 6.97 -2.39 -0.02 2.13 16 34 H 0.08 2.52 6.28 -2.39 -0.01 2.51 16 35 H 0.03 1.05 6.25 -2.39 -0.01 1.03 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -76.52 333.66 4.26 -72.26 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.03 Total: 11.08 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.29 Total: 13.25 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -5.02 Total: -110.95 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.06 Total: -32.21 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -76.52 4.26 -72.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333886635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.984 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds