Wall clock time and date at job start Mon Mar 30 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31797 * 119.08676 * 2 1 4 4 C 1.32502 * 120.99049 * 179.97438 * 3 2 1 5 5 C 1.38217 * 119.18416 * 359.71606 * 4 3 2 6 6 C 1.50695 * 120.83164 * 180.30239 * 5 4 3 7 7 C 1.39489 * 118.33558 * 0.54109 * 5 4 3 8 8 N 1.39048 * 120.52197 * 179.73239 * 7 5 4 9 9 C 1.34777 * 119.99967 * 179.44604 * 8 7 5 10 10 O 1.21273 * 120.00216 * 0.28155 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27712 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46985 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 119.99681 * 19 17 15 22 22 H 1.48506 * 109.47035 * 240.00096 * 19 17 15 23 23 N 1.31744 * 119.08568 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47452 * 270.02715 * 1 2 3 25 25 H 1.09003 * 109.47304 * 30.02555 * 1 2 3 26 26 H 1.09006 * 109.47132 * 150.02802 * 1 2 3 27 27 H 1.08005 * 120.40554 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.46955 * 270.24645 * 6 5 4 29 29 H 1.08996 * 109.47299 * 30.24503 * 6 5 4 30 30 H 1.08996 * 109.47275 * 150.24745 * 6 5 4 31 31 H 0.97001 * 120.00245 * 359.73034 * 8 7 5 32 32 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 33 33 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 34 34 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 35 35 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 36 36 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 37 37 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 38 38 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 39 39 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 40 40 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4719 1.1958 0.0005 5 6 4.1856 0.0121 0.0070 6 6 5.6925 0.0189 0.0147 7 6 3.4761 -1.1888 0.0012 8 7 4.1482 -2.4061 0.0018 9 6 3.4521 -3.5602 0.0075 10 8 2.2396 -3.5370 0.0069 11 6 4.1804 -4.8795 0.0144 12 6 3.1642 -6.0231 0.0193 13 6 3.9036 -7.3625 0.0257 14 6 2.8873 -8.5062 0.0299 15 6 3.6157 -9.8255 0.0368 16 1 4.6955 -9.8461 0.0377 17 6 2.9036 -11.0061 0.0410 18 7 1.5887 -10.9810 0.0395 19 14 3.8064 -12.6414 0.0503 20 1 5.2714 -12.3980 0.0513 21 1 3.4306 -13.4074 1.2657 22 1 3.4350 -13.4187 -1.1593 23 7 2.1474 -1.1513 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8903 -0.5134 27 1 3.9873 2.1449 0.0009 28 1 6.0610 0.0224 -1.0112 29 1 6.0493 0.9095 0.5319 30 1 6.0573 -0.8704 0.5286 31 1 5.1180 -2.4247 0.0023 32 1 4.8062 -4.9537 -0.8750 33 1 4.8056 -4.9447 0.9049 34 1 2.5381 -5.9491 0.9084 35 1 2.5393 -5.9577 -0.8716 36 1 4.5294 -7.4363 -0.8637 37 1 4.5287 -7.4282 0.9162 38 1 2.2611 -8.4326 0.9190 39 1 2.2626 -8.4404 -0.8610 40 1 1.0877 -11.8115 0.0428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334115667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:19 Heat of formation + Delta-G solvation = -6.408362 kcal Electronic energy + Delta-G solvation = -20377.239649 eV Core-core repulsion = 17191.636172 eV Total energy + Delta-G solvation = -3185.603478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59361 -39.66528 -36.05107 -34.93526 -34.26208 -32.79742 -32.29445 -30.43866 -29.74326 -26.36897 -25.92367 -24.50063 -22.53447 -22.02875 -20.65647 -20.02588 -18.25749 -17.75835 -16.42568 -16.16431 -16.15895 -15.35945 -15.07139 -14.58562 -14.47425 -14.13038 -14.03780 -13.76196 -13.40451 -12.84907 -12.69120 -12.66235 -12.47461 -12.31198 -11.76585 -11.63088 -11.55739 -11.02714 -11.01463 -10.58711 -10.50160 -10.45531 -10.18919 -10.05287 -9.64164 -9.32014 -9.07465 -8.96323 -8.82623 -8.31801 -5.96244 -3.98896 0.64708 0.93397 2.51026 2.61070 3.32421 3.39651 3.43330 3.60498 3.80063 3.95076 4.27461 4.47668 4.49591 4.59967 4.77175 5.07994 5.11097 5.20926 5.25866 5.36010 5.39236 5.42712 5.44910 5.54624 5.71668 5.74850 5.94139 6.07647 6.22971 6.35418 6.49967 6.57815 6.79206 6.97416 7.14528 7.18998 7.73047 7.88293 7.93352 8.04967 8.12926 8.46471 9.09039 9.64944 11.15133 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036064 B = 0.002664 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.212006 B =10508.905751 C =11243.442344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.341 3.659 3 N -0.544 5.544 4 C 0.169 3.831 5 C -0.244 4.244 6 C -0.100 4.100 7 C 0.411 3.589 8 N -0.661 5.661 9 C 0.499 3.501 10 O -0.458 6.458 11 C -0.136 4.136 12 C -0.105 4.105 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.508 5.508 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.168 0.832 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.418 0.582 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 25.926 -0.107 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 N -0.261 5.261 4 C 0.005 3.995 5 C -0.252 4.252 6 C -0.158 4.158 7 C 0.170 3.830 8 N -0.309 5.309 9 C 0.285 3.715 10 O -0.324 6.324 11 C -0.176 4.176 12 C -0.143 4.143 13 C -0.147 4.147 14 C -0.018 4.018 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.229 5.229 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.185 0.815 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.257 0.743 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.843 25.651 -0.109 26.308 hybrid contribution 1.985 -0.952 0.032 2.202 sum 7.828 24.699 -0.077 25.910 Atomic orbital electron populations 1.20570 0.85493 1.04220 1.03974 1.23231 0.98206 0.82420 0.88832 1.68267 1.09792 1.30280 1.17807 1.22879 0.89370 0.97392 0.89868 1.21071 0.98699 0.93577 1.11854 1.20556 0.89207 1.03302 1.02782 1.18627 0.88939 0.85768 0.89645 1.44007 1.10924 1.03618 1.72394 1.21561 0.88846 0.85212 0.75859 1.90830 1.13397 1.86430 1.41756 1.21851 1.00451 0.90889 1.04382 1.21487 0.96814 0.92757 1.03205 1.21645 0.99254 0.93693 1.00140 1.19101 0.93899 0.91410 0.97368 1.21310 0.92988 0.91189 1.50348 0.92704 1.25044 0.94832 0.99265 0.95458 1.69981 1.05446 1.27039 1.50962 0.86557 0.79929 0.84060 0.77563 1.19786 1.21039 1.21044 1.68341 1.06836 1.30152 1.17591 0.89570 0.89661 0.89269 0.81475 0.90678 0.90499 0.91664 0.74327 0.88694 0.88706 0.91602 0.91601 0.93400 0.93401 0.96556 0.96553 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.32 36.00 0.37 -0.48 16 2 C 0.34 4.44 7.64 -157.24 -1.20 3.23 16 3 N -0.54 -6.38 10.33 -10.79 -0.11 -6.49 16 4 C 0.17 1.54 11.00 -17.27 -0.19 1.35 16 5 C -0.24 -2.18 5.93 -104.17 -0.62 -2.80 16 6 C -0.10 -0.48 9.64 36.00 0.35 -0.14 16 7 C 0.41 5.06 7.44 -154.39 -1.15 3.91 16 8 N -0.66 -7.03 5.31 -11.28 -0.06 -7.09 16 9 C 0.50 6.95 7.79 -10.98 -0.09 6.86 16 10 O -0.46 -8.46 14.27 5.56 0.08 -8.38 16 11 C -0.14 -1.69 5.70 -27.89 -0.16 -1.85 16 12 C -0.10 -1.82 4.50 -26.74 -0.12 -1.94 16 13 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 N -0.51 -7.61 7.93 -9.89 -0.08 -7.69 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 30 H 0.06 0.25 6.68 -51.93 -0.35 -0.09 16 31 H 0.42 2.71 6.84 -40.82 -0.28 2.43 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.07 1.23 8.10 -51.92 -0.42 0.81 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -36.50 339.99 -8.90 -45.40 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.08 Total: -3.37 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -3.49 Total: -7.55 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.49 Total: -48.04 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.50 -8.90 -45.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334115667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.990 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds