Wall clock time and date at job start Mon Mar 30 2020 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31797 * 119.08676 * 2 1 4 4 C 1.32502 * 120.99049 * 179.97438 * 3 2 1 5 5 C 1.38217 * 119.18416 * 359.71606 * 4 3 2 6 6 C 1.50695 * 120.83164 * 180.30239 * 5 4 3 7 7 C 1.39489 * 118.33558 * 0.54109 * 5 4 3 8 8 N 1.39048 * 120.52197 * 179.73239 * 7 5 4 9 9 C 1.34777 * 119.99967 * 179.44604 * 8 7 5 10 10 O 1.21273 * 120.00216 * 0.28155 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27712 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46985 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 119.99681 * 19 17 15 22 22 H 1.48506 * 109.47035 * 240.00096 * 19 17 15 23 23 N 1.31744 * 119.08568 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47452 * 270.02715 * 1 2 3 25 25 H 1.09003 * 109.47304 * 30.02555 * 1 2 3 26 26 H 1.09006 * 109.47132 * 150.02802 * 1 2 3 27 27 H 1.08005 * 120.40554 * 180.02562 * 4 3 2 28 28 H 1.09003 * 109.46955 * 270.24645 * 6 5 4 29 29 H 1.08996 * 109.47299 * 30.24503 * 6 5 4 30 30 H 1.08996 * 109.47275 * 150.24745 * 6 5 4 31 31 H 0.97001 * 120.00245 * 359.73034 * 8 7 5 32 32 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 33 33 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 34 34 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 35 35 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 36 36 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 37 37 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 38 38 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 39 39 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 40 40 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4719 1.1958 0.0005 5 6 4.1856 0.0121 0.0070 6 6 5.6925 0.0189 0.0147 7 6 3.4761 -1.1888 0.0012 8 7 4.1482 -2.4061 0.0018 9 6 3.4521 -3.5602 0.0075 10 8 2.2396 -3.5370 0.0069 11 6 4.1804 -4.8795 0.0144 12 6 3.1642 -6.0231 0.0193 13 6 3.9036 -7.3625 0.0257 14 6 2.8873 -8.5062 0.0299 15 6 3.6157 -9.8255 0.0368 16 1 4.6955 -9.8461 0.0377 17 6 2.9036 -11.0061 0.0410 18 7 1.5887 -10.9810 0.0395 19 14 3.8064 -12.6414 0.0503 20 1 5.2714 -12.3980 0.0513 21 1 3.4306 -13.4074 1.2657 22 1 3.4350 -13.4187 -1.1593 23 7 2.1474 -1.1513 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8903 -0.5134 27 1 3.9873 2.1449 0.0009 28 1 6.0610 0.0224 -1.0112 29 1 6.0493 0.9095 0.5319 30 1 6.0573 -0.8704 0.5286 31 1 5.1180 -2.4247 0.0023 32 1 4.8062 -4.9537 -0.8750 33 1 4.8056 -4.9447 0.9049 34 1 2.5381 -5.9491 0.9084 35 1 2.5393 -5.9577 -0.8716 36 1 4.5294 -7.4363 -0.8637 37 1 4.5287 -7.4282 0.9162 38 1 2.2611 -8.4326 0.9190 39 1 2.2626 -8.4404 -0.8610 40 1 1.0877 -11.8115 0.0428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334115667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:18 Heat of formation + Delta-G solvation = -30.132784 kcal Electronic energy + Delta-G solvation = -20378.268418 eV Core-core repulsion = 17191.636172 eV Total energy + Delta-G solvation = -3186.632246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44143 -40.69539 -37.07722 -36.50795 -35.05506 -34.63611 -33.36623 -31.43006 -31.09955 -27.83436 -26.73317 -25.70612 -23.98169 -22.94872 -21.94104 -21.49832 -19.12488 -18.72680 -18.38529 -17.37231 -17.18468 -16.50702 -16.39877 -15.83503 -15.48436 -15.31482 -15.11565 -14.54861 -14.32936 -14.17362 -13.88069 -13.62456 -13.32030 -13.29887 -13.23374 -13.14504 -12.86459 -12.54407 -12.31799 -12.17720 -12.14870 -11.81735 -11.38540 -11.38444 -11.23128 -11.01079 -10.93481 -10.55973 -9.98588 -9.59889 -8.18940 -6.31116 -0.16868 0.12198 1.40487 1.41403 1.54776 1.59639 1.66244 2.41749 2.77349 2.98224 3.14056 3.19528 3.56603 3.74574 3.93824 3.98751 4.12598 4.14021 4.38994 4.60640 4.64759 4.66788 4.70256 4.80217 4.81192 4.86096 4.91130 4.95421 5.12521 5.17033 5.22332 5.32947 5.37214 5.55548 5.57967 5.77320 5.78110 5.88389 6.24970 6.34997 6.88047 6.99824 7.27039 7.38775 8.93617 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036064 B = 0.002664 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.212006 B =10508.905751 C =11243.442344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.315 3.685 3 N -0.553 5.553 4 C 0.160 3.840 5 C -0.224 4.224 6 C -0.101 4.101 7 C 0.378 3.622 8 N -0.643 5.643 9 C 0.500 3.500 10 O -0.516 6.516 11 C -0.122 4.122 12 C -0.098 4.098 13 C -0.094 4.094 14 C 0.017 3.983 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.008 4.008 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.256 1.256 21 H -0.280 1.280 22 H -0.280 1.280 23 N -0.552 5.552 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.209 0.791 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.439 0.561 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.063 0.937 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.747 27.027 -0.068 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.047 3.953 3 N -0.271 5.271 4 C -0.003 4.003 5 C -0.232 4.232 6 C -0.158 4.158 7 C 0.138 3.862 8 N -0.293 5.293 9 C 0.288 3.712 10 O -0.387 6.387 11 C -0.161 4.161 12 C -0.136 4.136 13 C -0.132 4.132 14 C -0.020 4.020 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.205 4.205 18 N -0.580 5.580 19 Si 0.794 3.206 20 H -0.179 1.179 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.274 5.274 24 H 0.110 0.890 25 H 0.120 0.880 26 H 0.093 0.907 27 H 0.225 0.775 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.281 0.719 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.775 26.793 -0.071 28.521 hybrid contribution 0.790 -1.200 0.019 1.437 sum 10.565 25.593 -0.052 27.688 Atomic orbital electron populations 1.20582 0.84695 1.04264 1.04367 1.23548 0.99130 0.82559 0.90013 1.68305 1.11373 1.29588 1.17792 1.23649 0.88665 0.99205 0.88803 1.21504 1.00903 0.91955 1.08790 1.20727 0.85745 1.05086 1.04255 1.19042 0.88788 0.87185 0.91179 1.43702 1.11742 1.02429 1.71467 1.21783 0.88219 0.86464 0.74755 1.90823 1.15859 1.87282 1.44726 1.21723 0.99044 0.87832 1.07545 1.21265 0.97470 0.93749 1.01103 1.21434 0.97795 0.92387 1.01575 1.19069 0.94697 0.93953 0.94261 1.21790 0.93772 0.92184 1.49990 0.91423 1.26105 0.95663 1.03910 0.94849 1.70141 1.07465 1.28334 1.52033 0.85331 0.79248 0.78414 0.77632 1.17944 1.20542 1.20548 1.68259 1.08837 1.31475 1.18792 0.89001 0.88002 0.90708 0.77460 0.89111 0.88251 0.90418 0.71862 0.85407 0.85403 0.93880 0.93883 0.91794 0.91790 0.99808 0.99806 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.32 71.23 0.73 -1.01 16 2 C 0.32 8.44 7.64 138.76 1.06 9.50 16 3 N -0.55 -12.57 10.33 -188.06 -1.94 -14.51 16 4 C 0.16 2.54 11.00 84.59 0.93 3.47 16 5 C -0.22 -3.45 5.93 -19.57 -0.12 -3.56 16 6 C -0.10 -0.53 9.64 71.23 0.69 0.16 16 7 C 0.38 8.98 7.44 132.98 0.99 9.97 16 8 N -0.64 -12.60 5.31 -307.99 -1.63 -14.23 16 9 C 0.50 13.67 7.79 87.66 0.68 14.36 16 10 O -0.52 -19.99 14.27 -3.01 -0.04 -20.04 16 11 C -0.12 -2.77 5.70 29.85 0.17 -2.60 16 12 C -0.10 -3.44 4.50 30.59 0.14 -3.30 16 13 C -0.09 -3.75 5.15 30.59 0.16 -3.59 16 14 C 0.02 0.95 4.97 29.85 0.15 1.10 16 15 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 18 N -0.94 -59.33 13.29 21.44 0.28 -59.04 16 19 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 N -0.55 -17.06 7.93 -185.20 -1.47 -18.53 16 24 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.10 0.15 8.10 -2.39 -0.02 0.13 16 30 H 0.08 0.25 6.68 -2.39 -0.02 0.24 16 31 H 0.44 4.23 6.84 -92.71 -0.63 3.60 16 32 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -84.66 339.99 3.90 -80.76 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 0.40 Total: 5.28 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 6.28 Total: -6.43 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -4.76 Total: -106.32 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.04 Total: -20.04 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -84.66 3.90 -80.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334115667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.628 kcal (2) G-P(sol) polarization free energy of solvation -84.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds