Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47068 * 143.89020 * 3 2 1 5 5 C 1.36939 * 119.99939 * 263.96723 * 4 3 2 6 6 H 1.08002 * 120.00113 * 198.17639 * 5 4 3 7 7 C 1.38808 * 120.00179 * 18.18259 * 5 4 3 8 8 N 1.31623 * 120.00217 * 23.06196 * 7 5 4 9 9 Si 1.86800 * 120.00106 * 203.06726 * 7 5 4 10 10 H 1.48494 * 109.47151 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47338 * 120.00131 * 9 7 5 12 12 H 1.48504 * 109.47246 * 239.99873 * 9 7 5 13 13 C 1.46497 * 120.00083 * 83.96304 * 4 3 2 14 14 C 1.50706 * 109.46868 * 90.00465 * 13 4 3 15 15 C 1.39875 * 126.03474 * 269.69071 * 14 13 4 16 16 C 1.50695 * 125.89929 * 0.02562 * 15 14 13 17 17 N 1.30841 * 108.19652 * 179.81707 * 15 14 13 18 18 N 1.40085 * 108.20884 * 0.43714 * 17 15 14 19 19 C 1.46495 * 126.03669 * 179.73704 * 18 17 15 20 20 C 1.52998 * 109.47199 * 269.97622 * 19 18 17 21 21 O 1.42901 * 109.47347 * 180.02562 * 20 19 18 22 22 C 1.34949 * 107.92261 * 359.72434 * 18 17 15 23 23 C 1.50698 * 126.12522 * 179.97438 * 22 18 17 24 24 H 4.40636 * 5.51449 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46961 * 23.89402 * 3 2 1 26 26 H 1.08998 * 109.47125 * 263.88874 * 3 2 1 27 27 H 0.97000 * 120.00147 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47415 * 209.99785 * 13 4 3 29 29 H 1.08995 * 109.47660 * 330.00367 * 13 4 3 30 30 H 1.08997 * 109.47211 * 90.00283 * 16 15 14 31 31 H 1.09005 * 109.46733 * 209.99641 * 16 15 14 32 32 H 1.08994 * 109.47383 * 329.99403 * 16 15 14 33 33 H 1.09000 * 109.47641 * 29.98255 * 19 18 17 34 34 H 1.09002 * 109.47170 * 149.98082 * 19 18 17 35 35 H 1.08996 * 109.47768 * 300.00209 * 20 19 18 36 36 H 1.08998 * 109.47110 * 60.00774 * 20 19 18 37 37 H 0.96704 * 114.00252 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47230 * 270.01794 * 23 22 18 39 39 H 1.08997 * 109.47404 * 30.02000 * 23 22 18 40 40 H 1.09006 * 109.47403 * 150.01841 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1167 -0.8140 5 6 3.4797 0.9098 -2.1227 6 1 4.1017 1.6275 -2.6369 7 6 3.0306 -0.2223 -2.7886 8 7 1.9514 -0.8481 -2.3688 9 14 3.9579 -0.8579 -4.2804 10 1 5.1276 0.0175 -4.5461 11 1 4.4250 -2.2433 -4.0198 12 1 3.0581 -0.8530 -5.4618 13 6 3.2516 2.4542 -0.2279 14 6 4.6244 2.6209 0.3712 15 6 4.9901 2.3188 1.6871 16 6 4.0785 1.7687 2.7534 17 7 6.2615 2.5923 1.8308 18 7 6.7433 3.0872 0.6120 19 6 8.1162 3.5196 0.3398 20 6 8.2530 5.0108 0.6539 21 8 9.5921 5.4328 0.3877 22 6 5.7194 3.0949 -0.2670 23 6 5.7838 3.5501 -1.7021 24 1 -1.0501 -0.0001 0.0003 25 1 3.0098 -0.9388 -0.4163 26 1 3.0093 0.1102 1.0218 27 1 1.6374 -1.6391 -2.8344 28 1 3.0999 3.2052 -1.0031 29 1 2.4982 2.5777 0.5500 30 1 4.1005 0.6793 2.7237 31 1 4.4149 2.1123 3.7317 32 1 3.0608 2.1165 2.5764 33 1 8.8066 2.9520 0.9637 34 1 8.3501 3.3468 -0.7108 35 1 7.5628 5.5784 0.0299 36 1 8.0193 5.1837 1.7044 37 1 9.7519 6.3698 0.5654 38 1 5.5562 4.6147 -1.7561 39 1 6.7848 3.3722 -2.0952 40 1 5.0570 2.9928 -2.2931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334333390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = 107.065218 kcal Electronic energy + Delta-G solvation = -21890.414849 eV Core-core repulsion = 18709.731955 eV Total energy + Delta-G solvation = -3180.682894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92830 -37.31909 -36.03872 -33.96119 -32.33775 -31.50549 -30.80742 -29.75598 -27.74031 -26.56912 -25.92817 -24.79771 -22.67023 -21.46036 -19.16438 -18.91583 -17.77816 -17.33143 -16.26208 -15.69818 -15.50407 -15.34060 -14.91032 -13.94274 -13.68273 -13.57176 -13.34866 -13.19404 -12.94284 -12.76333 -12.41229 -12.25524 -12.11054 -11.74549 -11.57324 -11.42922 -11.23245 -11.13106 -10.83258 -10.63883 -10.30809 -10.14793 -10.01929 -9.83602 -8.89308 -8.72852 -8.61103 -8.37148 -7.73315 -6.89571 -5.73760 -3.13179 2.26543 2.66675 3.26798 3.38184 3.47320 3.47714 4.15287 4.28113 4.44692 4.58048 4.59192 4.88182 5.07322 5.12407 5.14943 5.39663 5.43885 5.52248 5.59698 5.73791 5.79462 5.84774 5.91148 5.99402 6.02028 6.12965 6.30505 6.35196 6.58552 6.75427 6.83816 6.90130 7.21318 7.25176 7.30494 7.48361 7.51053 7.83548 8.21585 8.34605 9.16281 9.25916 9.84549 10.32441 11.29664 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.005839 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.936583 B = 4794.041872 C = 5982.052049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.093 4.093 3 C 0.268 3.732 4 N -0.578 5.578 5 C -0.258 4.258 6 H 0.076 0.924 7 C 0.003 3.997 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.293 1.293 13 C 0.219 3.781 14 C -0.223 4.223 15 C 0.084 3.916 16 C -0.070 4.070 17 N -0.311 5.311 18 N -0.380 5.380 19 C 0.140 3.860 20 C 0.063 3.937 21 O -0.571 6.571 22 C 0.092 3.908 23 C -0.098 4.098 24 H 0.189 0.811 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.252 0.748 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.385 0.615 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 10.413 6.474 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.096 4.096 3 C 0.142 3.858 4 N -0.298 5.298 5 C -0.387 4.387 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.220 1.220 13 C 0.091 3.909 14 C -0.236 4.236 15 C -0.083 4.083 16 C -0.128 4.128 17 N -0.133 5.133 18 N -0.165 5.165 19 C 0.018 3.982 20 C -0.016 4.016 21 O -0.376 6.376 22 C -0.033 4.033 23 C -0.156 4.156 24 H 0.206 0.794 25 H 0.107 0.893 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.232 0.768 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.305 9.695 6.969 15.137 hybrid contribution -0.472 0.071 -1.429 1.506 sum 8.833 9.766 5.540 14.286 Atomic orbital electron populations 1.24165 0.95312 1.05095 1.07755 1.24365 0.95327 0.96055 0.93891 1.17740 0.82657 0.93238 0.92136 1.44003 1.74469 1.02503 1.08789 1.19223 1.25007 1.06846 0.87635 0.90663 1.24855 0.96350 1.00423 0.97967 1.70154 1.19930 1.21068 1.41693 0.86411 0.79714 0.78983 0.82807 1.20430 1.21692 1.21980 1.19040 0.88546 0.87903 0.95409 1.20927 0.99393 1.09811 0.93472 1.22151 0.91904 0.98587 0.95612 1.20171 0.97054 1.00933 0.94669 1.77177 1.11653 1.21849 1.02662 1.48075 1.07872 1.52047 1.08540 1.21135 0.80144 0.93854 1.03097 1.22483 0.83633 0.95313 1.00154 1.86380 1.29028 1.31379 1.90858 1.20801 0.87827 1.01344 0.93335 1.20620 1.03694 1.01417 0.89868 0.79390 0.89321 0.94354 0.93722 0.92870 0.93591 0.90541 0.91726 0.90453 0.88591 0.88637 0.93053 0.92784 0.76787 0.91251 0.92005 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.90 19.25 29.55 0.57 -6.33 16 2 C -0.09 -2.25 11.55 -37.12 -0.43 -2.68 16 3 C 0.27 6.29 5.41 -6.83 -0.04 6.26 16 4 N -0.58 -13.71 2.47 -177.95 -0.44 -14.15 16 5 C -0.26 -6.66 9.62 -15.06 -0.14 -6.80 16 6 H 0.08 1.86 5.31 -52.49 -0.28 1.58 16 7 C 0.00 0.08 4.81 -17.43 -0.08 0.00 16 8 N -0.89 -24.94 9.61 55.49 0.53 -24.41 16 9 Si 0.89 21.27 29.61 -169.99 -5.03 16.23 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.22 4.41 5.58 -5.19 -0.03 4.38 16 14 C -0.22 -4.18 5.68 -105.05 -0.60 -4.78 16 15 C 0.08 1.50 7.22 -82.40 -0.59 0.91 16 16 C -0.07 -1.03 9.43 36.00 0.34 -0.69 16 17 N -0.31 -5.63 12.58 33.67 0.42 -5.21 16 18 N -0.38 -6.25 3.61 -57.15 -0.21 -6.45 16 19 C 0.14 1.81 6.61 -4.05 -0.03 1.78 16 20 C 0.06 0.68 7.37 37.16 0.27 0.95 16 21 O -0.57 -5.51 13.66 -35.23 -0.48 -5.99 16 22 C 0.09 1.60 6.93 -82.27 -0.57 1.03 16 23 C -0.10 -1.45 9.72 36.00 0.35 -1.10 16 24 H 0.19 3.59 7.80 -54.08 -0.42 3.17 16 25 H 0.09 2.32 6.53 -51.93 -0.34 1.98 16 26 H 0.04 0.80 6.36 -51.93 -0.33 0.47 16 27 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 29 H 0.05 0.89 7.18 -51.93 -0.37 0.52 16 30 H 0.08 1.12 7.33 -51.93 -0.38 0.74 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.09 7.25 -51.93 -0.38 0.71 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 1.14 7.05 -51.93 -0.37 0.77 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.38 1.88 9.12 45.56 0.42 2.29 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.81 7.08 -51.93 -0.37 0.45 16 40 H 0.10 1.79 5.13 -51.93 -0.27 1.52 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -32.09 334.88 -5.87 -37.96 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.73 Total: 4.04 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.98 Total: -7.07 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.31 Total: -50.21 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.48 Total: -5.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.09 -5.87 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334333390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.026 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds