Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47068 * 143.89020 * 3 2 1 5 5 C 1.36939 * 119.99939 * 263.96723 * 4 3 2 6 6 H 1.08002 * 120.00113 * 198.17639 * 5 4 3 7 7 C 1.38808 * 120.00179 * 18.18259 * 5 4 3 8 8 N 1.31623 * 120.00217 * 23.06196 * 7 5 4 9 9 Si 1.86800 * 120.00106 * 203.06726 * 7 5 4 10 10 H 1.48494 * 109.47151 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47338 * 120.00131 * 9 7 5 12 12 H 1.48504 * 109.47246 * 239.99873 * 9 7 5 13 13 C 1.46497 * 120.00083 * 83.96304 * 4 3 2 14 14 C 1.50706 * 109.46868 * 90.00465 * 13 4 3 15 15 C 1.39875 * 126.03474 * 269.69071 * 14 13 4 16 16 C 1.50695 * 125.89929 * 0.02562 * 15 14 13 17 17 N 1.30841 * 108.19652 * 179.81707 * 15 14 13 18 18 N 1.40085 * 108.20884 * 0.43714 * 17 15 14 19 19 C 1.46495 * 126.03669 * 179.73704 * 18 17 15 20 20 C 1.52998 * 109.47199 * 269.97622 * 19 18 17 21 21 O 1.42901 * 109.47347 * 180.02562 * 20 19 18 22 22 C 1.34949 * 107.92261 * 359.72434 * 18 17 15 23 23 C 1.50698 * 126.12522 * 179.97438 * 22 18 17 24 24 H 4.40636 * 5.51449 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46961 * 23.89402 * 3 2 1 26 26 H 1.08998 * 109.47125 * 263.88874 * 3 2 1 27 27 H 0.97000 * 120.00147 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47415 * 209.99785 * 13 4 3 29 29 H 1.08995 * 109.47660 * 330.00367 * 13 4 3 30 30 H 1.08997 * 109.47211 * 90.00283 * 16 15 14 31 31 H 1.09005 * 109.46733 * 209.99641 * 16 15 14 32 32 H 1.08994 * 109.47383 * 329.99403 * 16 15 14 33 33 H 1.09000 * 109.47641 * 29.98255 * 19 18 17 34 34 H 1.09002 * 109.47170 * 149.98082 * 19 18 17 35 35 H 1.08996 * 109.47768 * 300.00209 * 20 19 18 36 36 H 1.08998 * 109.47110 * 60.00774 * 20 19 18 37 37 H 0.96704 * 114.00252 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47230 * 270.01794 * 23 22 18 39 39 H 1.08997 * 109.47404 * 30.02000 * 23 22 18 40 40 H 1.09006 * 109.47403 * 150.01841 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1167 -0.8140 5 6 3.4797 0.9098 -2.1227 6 1 4.1017 1.6275 -2.6369 7 6 3.0306 -0.2223 -2.7886 8 7 1.9514 -0.8481 -2.3688 9 14 3.9579 -0.8579 -4.2804 10 1 5.1276 0.0175 -4.5461 11 1 4.4250 -2.2433 -4.0198 12 1 3.0581 -0.8530 -5.4618 13 6 3.2516 2.4542 -0.2279 14 6 4.6244 2.6209 0.3712 15 6 4.9901 2.3188 1.6871 16 6 4.0785 1.7687 2.7534 17 7 6.2615 2.5923 1.8308 18 7 6.7433 3.0872 0.6120 19 6 8.1162 3.5196 0.3398 20 6 8.2530 5.0108 0.6539 21 8 9.5921 5.4328 0.3877 22 6 5.7194 3.0949 -0.2670 23 6 5.7838 3.5501 -1.7021 24 1 -1.0501 -0.0001 0.0003 25 1 3.0098 -0.9388 -0.4163 26 1 3.0093 0.1102 1.0218 27 1 1.6374 -1.6391 -2.8344 28 1 3.0999 3.2052 -1.0031 29 1 2.4982 2.5777 0.5500 30 1 4.1005 0.6793 2.7237 31 1 4.4149 2.1123 3.7317 32 1 3.0608 2.1165 2.5764 33 1 8.8066 2.9520 0.9637 34 1 8.3501 3.3468 -0.7108 35 1 7.5628 5.5784 0.0299 36 1 8.0193 5.1837 1.7044 37 1 9.7519 6.3698 0.5654 38 1 5.5562 4.6147 -1.7561 39 1 6.7848 3.3722 -2.0952 40 1 5.0570 2.9928 -2.2931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334333390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = 85.937713 kcal Electronic energy + Delta-G solvation = -21891.331006 eV Core-core repulsion = 18709.731955 eV Total energy + Delta-G solvation = -3181.599052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.23860 -38.19634 -37.73535 -35.16281 -33.84411 -33.39902 -32.28361 -31.01360 -29.18852 -28.01765 -27.47800 -26.32832 -23.88596 -23.05932 -20.50445 -20.20621 -19.21781 -18.62004 -18.02185 -17.10025 -16.76010 -16.41072 -16.29879 -15.51891 -15.36191 -15.04930 -14.64328 -14.63535 -14.24290 -14.08207 -13.81065 -13.43815 -13.24327 -13.17436 -13.09758 -12.92048 -12.70961 -12.64645 -12.35810 -12.27764 -11.96759 -11.80504 -11.35953 -11.06285 -10.72895 -10.61922 -10.24719 -9.89472 -9.16754 -8.76508 -7.73960 -5.13156 0.96577 1.46767 1.51739 1.52152 1.58934 1.87183 2.46742 2.59376 2.66895 3.34164 3.37611 3.56981 3.87221 3.98773 4.04993 4.06665 4.17272 4.19701 4.28909 4.44814 4.57983 4.63784 4.69257 4.73464 4.78316 4.83495 4.96647 5.08475 5.13839 5.16289 5.32204 5.39634 5.48780 5.73641 5.85490 5.90135 6.25435 6.38597 6.74870 6.88839 7.20146 7.43553 7.94247 8.39093 9.27627 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.005839 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.936583 B = 4794.041872 C = 5982.052049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.130 4.130 3 C 0.274 3.726 4 N -0.590 5.590 5 C -0.252 4.252 6 H 0.085 0.915 7 C -0.049 4.049 8 N -0.914 5.914 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.301 1.301 12 H -0.300 1.300 13 C 0.226 3.774 14 C -0.250 4.250 15 C 0.075 3.925 16 C -0.068 4.068 17 N -0.331 5.331 18 N -0.377 5.377 19 C 0.131 3.869 20 C 0.077 3.923 21 O -0.581 6.581 22 C 0.094 3.906 23 C -0.094 4.094 24 H 0.220 0.780 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.242 0.758 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.406 0.594 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.207 11.975 6.544 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.133 4.133 3 C 0.148 3.852 4 N -0.309 5.309 5 C -0.382 4.382 6 H 0.103 0.897 7 C -0.245 4.245 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.228 1.228 12 H -0.228 1.228 13 C 0.100 3.900 14 C -0.263 4.263 15 C -0.091 4.091 16 C -0.126 4.126 17 N -0.153 5.153 18 N -0.161 5.161 19 C 0.010 3.990 20 C -0.003 4.003 21 O -0.389 6.389 22 C -0.033 4.033 23 C -0.152 4.152 24 H 0.237 0.763 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.257 0.743 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.404 11.313 7.061 16.914 hybrid contribution -0.731 -0.313 -1.406 1.616 sum 9.673 11.000 5.654 15.702 Atomic orbital electron populations 1.24968 0.96314 1.03674 1.06455 1.24691 0.96090 0.97387 0.95134 1.17601 0.82757 0.91907 0.92933 1.44203 1.74486 1.03898 1.08335 1.19617 1.23698 1.06450 0.88415 0.89746 1.25454 0.97249 1.01268 1.00509 1.70302 1.21420 1.21279 1.42963 0.85535 0.78892 0.77951 0.80059 1.18969 1.22815 1.22759 1.18999 0.89734 0.86016 0.95265 1.20772 0.99081 1.12172 0.94303 1.22536 0.92201 0.98379 0.95993 1.20224 0.96838 1.00657 0.94904 1.77133 1.11798 1.22621 1.03788 1.48286 1.08779 1.51214 1.07843 1.21414 0.78272 0.95495 1.03826 1.22216 0.84398 0.93724 0.99925 1.86331 1.28222 1.33524 1.90864 1.21147 0.87716 1.00193 0.94264 1.20631 1.04059 1.02595 0.87886 0.76296 0.92587 0.92104 0.94811 0.93044 0.93161 0.90749 0.89889 0.89997 0.88771 0.87433 0.92224 0.93344 0.74285 0.88588 0.90159 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.13 19.25 74.32 1.43 -11.70 16 2 C -0.13 -6.28 11.55 31.13 0.36 -5.92 16 3 C 0.27 13.00 5.41 84.57 0.46 13.46 16 4 N -0.59 -27.91 2.47 -716.92 -1.77 -29.68 16 5 C -0.25 -12.95 9.62 84.03 0.81 -12.15 16 6 H 0.09 4.11 5.31 -2.91 -0.02 4.10 16 7 C -0.05 -2.65 4.81 84.86 0.41 -2.24 16 8 N -0.91 -52.40 9.61 21.65 0.21 -52.20 16 9 Si 0.95 44.14 29.61 68.60 2.03 46.18 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 13 C 0.23 8.98 5.58 85.64 0.48 9.46 16 14 C -0.25 -9.13 5.68 -20.14 -0.11 -9.25 16 15 C 0.07 2.60 7.22 43.10 0.31 2.92 16 16 C -0.07 -1.93 9.43 71.23 0.67 -1.26 16 17 N -0.33 -11.57 12.58 -47.38 -0.60 -12.16 16 18 N -0.38 -11.72 3.61 -334.71 -1.21 -12.93 16 19 C 0.13 3.10 6.61 86.38 0.57 3.67 16 20 C 0.08 1.44 7.37 71.98 0.53 1.97 16 21 O -0.58 -9.56 13.66 -148.98 -2.04 -11.60 16 22 C 0.09 3.09 6.93 41.40 0.29 3.37 16 23 C -0.09 -2.56 9.72 71.24 0.69 -1.87 16 24 H 0.22 7.91 7.80 -4.41 -0.03 7.87 16 25 H 0.06 3.02 6.53 -2.39 -0.02 3.00 16 26 H 0.06 2.54 6.36 -2.39 -0.02 2.53 16 27 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.05 2.02 7.67 -2.39 -0.02 2.00 16 29 H 0.05 1.92 7.18 -2.39 -0.02 1.90 16 30 H 0.07 2.13 7.33 -2.39 -0.02 2.12 16 31 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.08 2.22 7.25 -2.39 -0.02 2.20 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.11 2.27 7.05 -2.39 -0.02 2.26 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.41 2.75 9.12 -74.05 -0.68 2.08 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 1.87 7.08 -2.39 -0.02 1.86 16 40 H 0.08 2.63 5.13 -2.38 -0.01 2.62 16 Total: -1.00 -68.07 334.88 3.90 -64.17 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.38 Total: 17.75 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 6.89 Total: -9.52 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.37 Total: -106.97 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -2.04 Total: -11.60 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.07 3.90 -64.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334333390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.105 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds