Wall clock time and date at job start Mon Mar 30 2020 01:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38879 * 120.33726 * 2 1 4 4 C 1.38299 * 118.51200 * 180.02562 * 3 2 1 5 5 C 1.39139 * 119.09099 * 0.02562 * 4 3 2 6 6 N 1.39009 * 119.70472 * 179.97438 * 5 4 3 7 7 C 1.46507 * 119.99534 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.46641 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47146 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00328 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99828 * 0.02562 * 10 9 8 12 12 C 1.50693 * 119.99868 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.47566 * 60.00144 * 12 10 9 14 14 C 1.53009 * 109.47367 * 299.99746 * 12 10 9 15 15 C 1.50704 * 109.46869 * 180.02562 * 12 10 9 16 16 H 1.08004 * 120.00117 * 5.63814 * 15 12 10 17 17 C 1.37881 * 119.99795 * 185.64859 * 15 12 10 18 18 N 1.31522 * 119.99732 * 197.12378 * 17 15 12 19 19 Si 1.86797 * 120.00446 * 17.39273 * 17 15 12 20 20 H 1.48499 * 109.47424 * 179.72706 * 19 17 15 21 21 H 1.48497 * 109.46923 * 299.73130 * 19 17 15 22 22 H 1.48505 * 109.46879 * 59.72617 * 19 17 15 23 23 N 1.32393 * 120.59354 * 0.27219 * 5 4 3 24 24 C 1.31981 * 121.62018 * 359.43669 * 23 5 4 25 25 H 1.09006 * 109.47340 * 90.00188 * 1 2 3 26 26 H 1.08996 * 109.47391 * 209.99751 * 1 2 3 27 27 H 1.08995 * 109.47224 * 330.00102 * 1 2 3 28 28 H 1.08004 * 120.74631 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.45390 * 180.02562 * 4 3 2 30 30 H 0.96995 * 120.00119 * 179.97438 * 6 5 4 31 31 H 1.08997 * 109.46605 * 60.00855 * 7 6 5 32 32 H 1.08991 * 109.47193 * 300.00159 * 7 6 5 33 33 H 1.09000 * 109.47431 * 60.00212 * 8 7 6 34 34 H 1.09003 * 109.47163 * 300.00230 * 8 7 6 35 35 H 0.97008 * 119.99932 * 0.02562 * 9 8 7 36 36 H 1.08995 * 109.46740 * 306.35071 * 14 12 10 37 37 H 1.08995 * 109.46393 * 66.34678 * 14 12 10 38 38 H 1.09001 * 109.47252 * 186.35195 * 14 12 10 39 39 H 0.97000 * 119.99480 * 355.23561 * 18 17 15 40 40 H 1.07992 * 119.57121 * 180.29051 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1986 0.0000 4 6 3.5907 1.1546 -0.0005 5 6 4.2281 -0.0822 -0.0016 6 7 5.6169 -0.1414 -0.0027 7 6 6.4027 1.0952 -0.0033 8 6 7.8937 0.7518 -0.0051 9 7 8.6795 1.9882 -0.0051 10 6 10.0261 1.9309 -0.0061 11 8 10.5872 0.8558 -0.0074 12 6 10.8343 3.2028 -0.0054 13 1 10.5962 3.7842 0.8852 14 6 10.4983 4.0212 -1.2538 15 6 12.3029 2.8646 -0.0074 16 1 12.6202 1.8365 -0.1008 17 6 13.2415 3.8678 0.1103 18 7 14.4932 3.6395 -0.2225 19 14 12.7367 5.5489 0.7496 20 1 13.9232 6.4411 0.7866 21 1 11.7072 6.1311 -0.1483 22 1 12.1784 5.4106 2.1187 23 7 3.5238 -1.2032 -0.0075 24 6 2.2041 -1.1913 -0.0015 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6862 2.1440 0.0004 29 1 4.1675 2.0677 -0.0001 30 1 6.0657 -1.0012 -0.0031 31 1 6.1646 1.6772 0.8870 32 1 6.1632 1.6774 -0.8930 33 1 8.1315 0.1698 -0.8955 34 1 8.1335 0.1693 0.8844 35 1 8.2306 2.8482 -0.0037 36 1 10.6295 3.4014 -2.1407 37 1 9.4643 4.3612 -1.1978 38 1 11.1619 4.8840 -1.3121 39 1 14.7704 2.7477 -0.4847 40 1 1.6626 -2.1257 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334759165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:27 Heat of formation + Delta-G solvation = -9.392264 kcal Electronic energy + Delta-G solvation = -20264.601626 eV Core-core repulsion = 17078.868757 eV Total energy + Delta-G solvation = -3185.732870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49405 -39.07939 -36.82810 -34.39680 -33.81414 -33.12488 -31.59937 -31.07284 -28.80629 -26.12967 -24.85582 -24.26150 -23.16513 -21.84408 -21.58444 -19.43573 -18.00793 -17.38763 -17.03891 -16.06877 -15.79666 -15.48744 -15.30778 -14.66598 -14.48724 -14.33838 -14.03649 -13.74391 -13.31462 -13.25454 -13.09319 -12.72438 -12.67448 -12.10354 -11.99950 -11.79941 -11.78411 -11.52473 -11.05259 -10.54498 -10.27164 -10.18756 -9.96469 -9.82601 -9.65444 -8.89304 -8.84370 -8.70696 -8.19692 -7.87055 -6.46817 -4.04719 1.05319 1.19715 2.71908 3.31661 3.38622 3.50141 3.57444 3.66707 3.87088 4.37907 4.46690 4.53060 4.58695 4.76204 4.83044 4.86728 4.93727 5.15345 5.26116 5.27920 5.30704 5.56041 5.59612 5.66028 5.75195 5.78963 5.96338 6.08350 6.15324 6.33553 6.37202 6.48590 6.72754 6.81289 6.87101 7.20290 7.31273 7.74172 7.95057 8.18202 8.46465 9.02055 9.03712 9.64561 10.95299 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042802 B = 0.002671 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.014625 B =10481.557724 C =10963.592701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.207 4.207 3 C -0.033 4.033 4 C -0.236 4.236 5 C 0.402 3.598 6 N -0.721 5.721 7 C 0.119 3.881 8 C 0.111 3.889 9 N -0.746 5.746 10 C 0.528 3.472 11 O -0.533 6.533 12 C 0.003 3.997 13 H 0.045 0.955 14 C -0.144 4.144 15 C -0.590 4.590 16 H 0.074 0.926 17 C 0.028 3.972 18 N -0.904 5.904 19 Si 1.045 2.955 20 H -0.284 1.284 21 H -0.274 1.274 22 H -0.283 1.283 23 N -0.543 5.543 24 C 0.150 3.850 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.407 0.593 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.047 0.953 37 H 0.026 0.974 38 H 0.065 0.935 39 H 0.269 0.731 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.043 -2.449 0.403 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.212 4.212 3 C -0.059 4.059 4 C -0.261 4.261 5 C 0.166 3.834 6 N -0.354 5.354 7 C -0.006 4.006 8 C -0.014 4.014 9 N -0.402 5.402 10 C 0.317 3.683 11 O -0.407 6.407 12 C -0.019 4.019 13 H 0.063 0.937 14 C -0.202 4.202 15 C -0.628 4.628 16 H 0.092 0.908 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.873 3.127 20 H -0.210 1.210 21 H -0.200 1.200 22 H -0.210 1.210 23 N -0.260 5.260 24 C -0.008 4.008 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.243 0.757 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -26.443 -2.326 0.688 26.554 hybrid contribution -1.057 -0.734 -0.287 1.318 sum -27.501 -3.060 0.401 27.673 Atomic orbital electron populations 1.20554 0.90554 1.02534 1.01964 1.20589 0.97322 0.94062 1.09216 1.21216 0.93211 0.98008 0.93470 1.21428 0.95389 0.97398 1.11871 1.18313 0.85120 0.89367 0.90603 1.44277 1.01592 1.09058 1.80519 1.21505 0.90408 0.86605 1.02106 1.21202 0.88300 0.89047 1.02892 1.46124 1.07122 1.07857 1.79071 1.21508 0.80338 0.93153 0.73299 1.90573 1.70553 1.31646 1.47955 1.19200 0.97219 0.89966 0.95489 0.93729 1.22189 0.98244 1.00613 0.99187 1.21945 0.88086 0.97021 1.55747 0.90779 1.25785 0.93988 1.03945 0.93982 1.70833 1.18345 1.23958 1.40711 0.84051 0.75905 0.75814 0.76884 1.21008 1.20048 1.20984 1.67148 1.08740 1.29512 1.20603 1.22279 0.88304 0.97442 0.92825 0.91676 0.91714 0.91875 0.85121 0.85033 0.75658 0.91199 0.91208 0.91318 0.91299 0.76959 0.93358 0.95471 0.91650 0.92050 0.82998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.03 36.00 0.36 -0.17 16 2 C -0.21 -1.72 5.90 -104.46 -0.62 -2.33 16 3 C -0.03 -0.28 9.85 -39.32 -0.39 -0.67 16 4 C -0.24 -2.28 9.33 -39.22 -0.37 -2.64 16 5 C 0.40 4.56 7.65 -155.02 -1.19 3.37 16 6 N -0.72 -7.58 5.73 -60.42 -0.35 -7.93 16 7 C 0.12 1.14 5.01 -4.04 -0.02 1.12 16 8 C 0.11 1.43 5.79 -4.04 -0.02 1.41 16 9 N -0.75 -11.42 5.46 -60.30 -0.33 -11.75 16 10 C 0.53 11.42 7.15 -10.99 -0.08 11.34 16 11 O -0.53 -13.83 15.47 5.56 0.09 -13.75 16 12 C 0.00 0.07 2.22 -92.92 -0.21 -0.13 16 13 H 0.05 0.97 6.80 -51.93 -0.35 0.62 16 14 C -0.14 -2.90 8.72 37.16 0.32 -2.58 16 15 C -0.59 -16.92 8.63 -34.44 -0.30 -17.22 16 16 H 0.07 2.42 7.02 -52.48 -0.37 2.05 16 17 C 0.03 0.80 5.29 -17.81 -0.09 0.71 16 18 N -0.90 -27.97 13.70 55.43 0.76 -27.21 16 19 Si 1.05 24.16 26.29 -169.99 -4.47 19.70 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -5.63 5.76 56.52 0.33 -5.31 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 N -0.54 -6.47 10.39 -12.44 -0.13 -6.60 16 24 C 0.15 1.42 10.85 -17.56 -0.19 1.23 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 27 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 28 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 29 H 0.13 1.06 6.71 -52.49 -0.35 0.71 16 30 H 0.41 4.25 8.60 -40.82 -0.35 3.90 16 31 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 32 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 4.80 8.02 -40.82 -0.33 4.47 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.03 0.42 7.75 -51.93 -0.40 0.02 16 38 H 0.06 1.38 4.87 -51.93 -0.25 1.13 16 39 H 0.27 8.42 8.73 -40.82 -0.36 8.07 16 40 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -34.85 332.61 -8.03 -42.88 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.84 Total: 6.21 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.78 Total: -6.57 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.05 Total: -53.48 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -4.47 Total: 19.70 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.85 -8.03 -42.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334759165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.484 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds