Wall clock time and date at job start Mon Mar 30 2020 01:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38879 * 120.33726 * 2 1 4 4 C 1.38299 * 118.51200 * 180.02562 * 3 2 1 5 5 C 1.39139 * 119.09099 * 0.02562 * 4 3 2 6 6 N 1.39009 * 119.70472 * 179.97438 * 5 4 3 7 7 C 1.46507 * 119.99534 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.46641 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47146 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00328 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99828 * 0.02562 * 10 9 8 12 12 C 1.50693 * 119.99868 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.47566 * 60.00144 * 12 10 9 14 14 C 1.53009 * 109.47367 * 299.99746 * 12 10 9 15 15 C 1.50704 * 109.46869 * 180.02562 * 12 10 9 16 16 H 1.08004 * 120.00117 * 5.63814 * 15 12 10 17 17 C 1.37881 * 119.99795 * 185.64859 * 15 12 10 18 18 N 1.31522 * 119.99732 * 197.12378 * 17 15 12 19 19 Si 1.86797 * 120.00446 * 17.39273 * 17 15 12 20 20 H 1.48499 * 109.47424 * 179.72706 * 19 17 15 21 21 H 1.48497 * 109.46923 * 299.73130 * 19 17 15 22 22 H 1.48505 * 109.46879 * 59.72617 * 19 17 15 23 23 N 1.32393 * 120.59354 * 0.27219 * 5 4 3 24 24 C 1.31981 * 121.62018 * 359.43669 * 23 5 4 25 25 H 1.09006 * 109.47340 * 90.00188 * 1 2 3 26 26 H 1.08996 * 109.47391 * 209.99751 * 1 2 3 27 27 H 1.08995 * 109.47224 * 330.00102 * 1 2 3 28 28 H 1.08004 * 120.74631 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.45390 * 180.02562 * 4 3 2 30 30 H 0.96995 * 120.00119 * 179.97438 * 6 5 4 31 31 H 1.08997 * 109.46605 * 60.00855 * 7 6 5 32 32 H 1.08991 * 109.47193 * 300.00159 * 7 6 5 33 33 H 1.09000 * 109.47431 * 60.00212 * 8 7 6 34 34 H 1.09003 * 109.47163 * 300.00230 * 8 7 6 35 35 H 0.97008 * 119.99932 * 0.02562 * 9 8 7 36 36 H 1.08995 * 109.46740 * 306.35071 * 14 12 10 37 37 H 1.08995 * 109.46393 * 66.34678 * 14 12 10 38 38 H 1.09001 * 109.47252 * 186.35195 * 14 12 10 39 39 H 0.97000 * 119.99480 * 355.23561 * 18 17 15 40 40 H 1.07992 * 119.57121 * 180.29051 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1986 0.0000 4 6 3.5907 1.1546 -0.0005 5 6 4.2281 -0.0822 -0.0016 6 7 5.6169 -0.1414 -0.0027 7 6 6.4027 1.0952 -0.0033 8 6 7.8937 0.7518 -0.0051 9 7 8.6795 1.9882 -0.0051 10 6 10.0261 1.9309 -0.0061 11 8 10.5872 0.8558 -0.0074 12 6 10.8343 3.2028 -0.0054 13 1 10.5962 3.7842 0.8852 14 6 10.4983 4.0212 -1.2538 15 6 12.3029 2.8646 -0.0074 16 1 12.6202 1.8365 -0.1008 17 6 13.2415 3.8678 0.1103 18 7 14.4932 3.6395 -0.2225 19 14 12.7367 5.5489 0.7496 20 1 13.9232 6.4411 0.7866 21 1 11.7072 6.1311 -0.1483 22 1 12.1784 5.4106 2.1187 23 7 3.5238 -1.2032 -0.0075 24 6 2.2041 -1.1913 -0.0015 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6862 2.1440 0.0004 29 1 4.1675 2.0677 -0.0001 30 1 6.0657 -1.0012 -0.0031 31 1 6.1646 1.6772 0.8870 32 1 6.1632 1.6774 -0.8930 33 1 8.1315 0.1698 -0.8955 34 1 8.1335 0.1693 0.8844 35 1 8.2306 2.8482 -0.0037 36 1 10.6295 3.4014 -2.1407 37 1 9.4643 4.3612 -1.1978 38 1 11.1619 4.8840 -1.3121 39 1 14.7704 2.7477 -0.4847 40 1 1.6626 -2.1257 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334759165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:27 Heat of formation + Delta-G solvation = -35.993888 kcal Electronic energy + Delta-G solvation = -20265.755159 eV Core-core repulsion = 17078.868757 eV Total energy + Delta-G solvation = -3186.886403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19955 -40.69406 -37.74671 -35.81158 -35.58605 -33.94947 -33.17830 -32.11806 -29.78764 -26.86519 -26.78012 -25.07910 -24.39523 -23.16645 -22.30614 -21.08301 -19.51722 -18.75085 -18.01007 -17.49925 -16.88328 -16.77712 -15.92690 -15.85052 -15.56913 -15.36743 -15.13440 -15.00831 -14.82256 -14.33433 -13.92110 -13.85629 -13.74473 -13.38753 -13.16861 -13.09523 -12.85686 -12.77970 -12.42173 -12.32662 -11.92953 -11.56992 -10.98104 -10.94374 -10.66925 -10.65659 -10.36046 -10.33782 -10.10836 -8.77453 -8.57245 -6.36232 0.37963 0.53281 1.49889 1.61047 1.75886 1.79883 1.83881 2.55707 2.66987 2.97664 3.09847 3.58712 3.77096 3.98813 4.00830 4.16820 4.19867 4.27228 4.32429 4.33102 4.48226 4.70392 4.73133 4.78000 4.80059 4.90181 4.94172 4.99275 5.16250 5.18182 5.22552 5.42567 5.49683 5.55727 5.71806 5.86219 6.04582 6.05707 6.52900 6.61035 6.70342 7.23670 7.39540 7.48483 8.63406 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042802 B = 0.002671 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.014625 B =10481.557724 C =10963.592701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.205 4.205 3 C -0.038 4.038 4 C -0.242 4.242 5 C 0.378 3.622 6 N -0.728 5.728 7 C 0.134 3.866 8 C 0.114 3.886 9 N -0.717 5.717 10 C 0.525 3.475 11 O -0.592 6.592 12 C -0.004 4.004 13 H 0.072 0.928 14 C -0.138 4.138 15 C -0.601 4.601 16 H 0.011 0.989 17 C -0.028 4.028 18 N -0.939 5.939 19 Si 1.090 2.910 20 H -0.294 1.294 21 H -0.221 1.221 22 H -0.260 1.260 23 N -0.575 5.575 24 C 0.130 3.870 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.149 0.851 30 H 0.403 0.597 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.419 0.581 36 H 0.031 0.969 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.246 0.754 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.308 0.487 0.787 32.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.210 4.210 3 C -0.064 4.064 4 C -0.267 4.267 5 C 0.143 3.857 6 N -0.362 5.362 7 C 0.010 3.990 8 C -0.011 4.011 9 N -0.372 5.372 10 C 0.314 3.686 11 O -0.471 6.471 12 C -0.026 4.026 13 H 0.090 0.910 14 C -0.196 4.196 15 C -0.639 4.639 16 H 0.029 0.971 17 C -0.225 4.225 18 N -0.575 5.575 19 Si 0.908 3.092 20 H -0.221 1.221 21 H -0.145 1.145 22 H -0.185 1.185 23 N -0.292 5.292 24 C -0.027 4.027 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.176 0.824 29 H 0.167 0.833 30 H 0.238 0.762 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.256 0.744 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -30.814 0.613 1.055 30.838 hybrid contribution 0.188 -1.799 -0.411 1.855 sum -30.626 -1.186 0.644 30.656 Atomic orbital electron populations 1.20607 0.88464 1.03585 1.02760 1.20948 0.98865 0.93641 1.07521 1.21616 0.93001 0.99211 0.92555 1.21682 0.96189 0.97264 1.11541 1.18559 0.85214 0.90069 0.91841 1.44277 1.01668 1.09065 1.81152 1.21377 0.87407 0.86518 1.03729 1.21232 0.90357 0.87673 1.01849 1.45669 1.05135 1.09948 1.76435 1.21305 0.82297 0.91835 0.73184 1.90564 1.72212 1.33318 1.50976 1.19199 0.93737 0.91496 0.98180 0.91006 1.22069 1.01680 0.99370 0.96459 1.22074 0.92276 0.94217 1.55322 0.97057 1.27622 0.93015 1.08833 0.92985 1.71001 1.20219 1.22598 1.43718 0.83588 0.76879 0.70332 0.78360 1.22094 1.14452 1.18459 1.67103 1.09999 1.30484 1.21643 1.22687 0.87877 0.98955 0.93174 0.90884 0.90844 0.90716 0.82433 0.83332 0.76174 0.89457 0.89522 0.92549 0.92427 0.74362 0.94972 0.89597 0.92246 0.94553 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.03 71.23 0.71 -0.05 16 2 C -0.21 -2.91 5.90 -19.76 -0.12 -3.03 16 3 C -0.04 -0.53 9.85 22.44 0.22 -0.31 16 4 C -0.24 -4.02 9.33 22.50 0.21 -3.81 16 5 C 0.38 8.06 7.65 133.06 1.02 9.08 16 6 N -0.73 -14.44 5.73 -345.07 -1.98 -16.42 16 7 C 0.13 2.21 5.01 86.38 0.43 2.64 16 8 C 0.11 2.78 5.79 86.38 0.50 3.28 16 9 N -0.72 -20.10 5.46 -463.07 -2.53 -22.63 16 10 C 0.53 22.41 7.15 87.65 0.63 23.04 16 11 O -0.59 -31.97 15.47 -3.03 -0.05 -32.02 16 12 C 0.00 -0.19 2.22 -12.28 -0.03 -0.22 16 13 H 0.07 2.84 6.80 -2.39 -0.02 2.83 16 14 C -0.14 -5.06 8.72 71.99 0.63 -4.43 16 15 C -0.60 -35.57 8.63 25.60 0.22 -35.35 16 16 H 0.01 0.78 7.02 -2.91 -0.02 0.76 16 17 C -0.03 -1.66 5.29 84.65 0.45 -1.21 16 18 N -0.94 -60.68 13.70 21.45 0.29 -60.38 16 19 Si 1.09 46.67 26.29 68.60 1.80 48.47 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.22 -7.64 5.76 99.48 0.57 -7.07 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 23 N -0.57 -13.34 10.39 -193.26 -2.01 -15.35 16 24 C 0.13 2.32 10.85 84.62 0.92 3.24 16 25 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.07 0.46 8.09 -2.39 -0.02 0.44 16 27 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 28 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.15 1.82 6.71 -2.91 -0.02 1.80 16 30 H 0.40 8.40 8.60 -92.71 -0.80 7.61 16 31 H 0.09 1.18 7.93 -2.39 -0.02 1.16 16 32 H 0.09 1.18 7.93 -2.39 -0.02 1.16 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.42 8.10 8.02 -92.70 -0.74 7.36 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 2.15 7.75 -2.39 -0.02 2.13 16 38 H 0.06 2.25 4.87 -2.39 -0.01 2.24 16 39 H 0.25 16.52 8.73 -92.71 -0.81 15.71 16 40 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -83.22 332.61 0.68 -82.54 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.65 Total: 22.92 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.79 Total: -7.13 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -6.22 Total: -114.78 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.02 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.80 Total: 48.47 kcal Total: -83.22 0.68 -82.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334759165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.545 kcal (2) G-P(sol) polarization free energy of solvation -83.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds