Wall clock time and date at job start Mon Mar 30 2020 01:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38883 * 120.33504 * 2 1 4 4 C 1.38297 * 118.50902 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 359.97438 * 4 3 2 6 6 N 1.39000 * 119.70563 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00185 * 0.02562 * 6 5 4 8 8 C 1.53000 * 109.47302 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47302 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00288 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00338 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.46889 * 300.00448 * 12 10 9 14 14 C 1.53000 * 109.46939 * 59.99981 * 12 10 9 15 15 C 1.50694 * 109.47166 * 179.97438 * 12 10 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 N 1.32405 * 120.58723 * 0.28390 * 5 4 3 24 24 C 1.31975 * 121.61796 * 359.43210 * 23 5 4 25 25 H 1.09001 * 109.47193 * 90.00097 * 1 2 3 26 26 H 1.08997 * 109.47035 * 209.99964 * 1 2 3 27 27 H 1.09004 * 109.47335 * 329.99898 * 1 2 3 28 28 H 1.08005 * 120.74953 * 359.97438 * 3 2 1 29 29 H 1.07991 * 120.45658 * 180.02562 * 4 3 2 30 30 H 0.97001 * 119.99596 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47081 * 59.99765 * 7 6 5 32 32 H 1.08998 * 109.46734 * 299.99536 * 7 6 5 33 33 H 1.09002 * 109.46807 * 60.00133 * 8 7 6 34 34 H 1.09000 * 109.46966 * 300.00155 * 8 7 6 35 35 H 0.97006 * 119.99461 * 0.02562 * 9 8 7 36 36 H 1.09000 * 109.47156 * 59.99760 * 14 12 10 37 37 H 1.08997 * 109.47359 * 180.02562 * 14 12 10 38 38 H 1.09007 * 109.47356 * 300.00035 * 14 12 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.08000 * 119.56403 * 180.29166 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1546 -0.0005 5 6 4.2282 -0.0822 -0.0005 6 7 5.6169 -0.1413 -0.0016 7 6 6.4027 1.0951 -0.0022 8 6 7.8937 0.7518 -0.0027 9 7 8.6795 1.9882 -0.0039 10 6 10.0261 1.9309 -0.0051 11 8 10.5872 0.8557 -0.0047 12 6 10.8344 3.2027 -0.0069 13 1 10.5948 3.7842 -0.8972 14 6 10.5004 4.0210 1.2419 15 6 12.3029 2.8645 -0.0073 16 1 12.6194 1.8319 -0.0067 17 6 13.2427 3.8735 -0.0084 18 7 12.8575 5.1310 -0.0095 19 14 15.0631 3.4543 -0.0081 20 1 15.8596 4.7076 -0.0100 21 1 15.3885 2.6622 1.2051 22 1 15.3882 2.6598 -1.2199 23 7 3.5237 -1.2033 -0.0056 24 6 2.2040 -1.1912 0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6862 2.1441 -0.0004 29 1 4.1675 2.0676 -0.0001 30 1 6.0657 -1.0013 -0.0020 31 1 6.1646 1.6773 0.8880 32 1 6.1633 1.6772 -0.8920 33 1 8.1321 0.1693 -0.8927 34 1 8.1328 0.1697 0.8873 35 1 8.2306 2.8481 -0.0039 36 1 10.7399 3.4395 2.1322 37 1 11.0847 4.9412 1.2405 38 1 9.4381 4.2657 1.2427 39 1 13.5186 5.8407 -0.0099 40 1 1.6626 -2.1257 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334759166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:29 Heat of formation + Delta-G solvation = -32.547387 kcal Electronic energy + Delta-G solvation = -20205.678653 eV Core-core repulsion = 17018.941701 eV Total energy + Delta-G solvation = -3186.736951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18515 -40.57871 -37.71332 -35.77991 -35.51316 -33.90755 -32.67157 -32.01718 -29.69053 -27.19793 -26.80406 -25.05672 -24.42536 -23.21791 -22.29199 -21.10434 -18.82189 -18.28489 -17.95928 -17.47606 -16.78403 -16.77189 -16.19492 -15.90430 -15.67770 -15.28949 -15.07125 -14.99658 -14.54673 -14.40271 -13.85880 -13.82063 -13.46457 -13.15244 -12.97377 -12.93679 -12.82894 -12.66374 -12.57222 -12.41020 -12.18322 -12.00457 -11.04064 -10.93379 -10.65141 -10.62532 -10.35873 -10.33484 -10.03616 -8.56181 -8.14761 -6.24704 0.38727 0.53795 1.41717 1.42784 1.51273 1.84364 1.91058 2.42673 2.75639 2.98377 3.14903 3.61543 3.78139 4.01440 4.01784 4.19657 4.27460 4.32307 4.33147 4.39659 4.74440 4.77009 4.82165 4.84850 4.94958 4.96822 4.99878 5.04979 5.17221 5.23175 5.48416 5.51382 5.52095 5.72581 5.76101 5.95351 6.05373 6.22761 6.55250 6.72205 6.85766 7.24348 7.39947 7.52482 8.90627 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.054557 B = 0.002507 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.105111 B =11165.784890 C =11578.822354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.205 4.205 3 C -0.038 4.038 4 C -0.244 4.244 5 C 0.379 3.621 6 N -0.726 5.726 7 C 0.134 3.866 8 C 0.115 3.885 9 N -0.721 5.721 10 C 0.523 3.477 11 O -0.587 6.587 12 C 0.024 3.976 13 H 0.045 0.955 14 C -0.120 4.120 15 C -0.530 4.530 16 H 0.047 0.953 17 C 0.019 3.981 18 N -0.909 5.909 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.277 1.277 22 H -0.277 1.277 23 N -0.573 5.573 24 C 0.131 3.869 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.404 0.596 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.021 0.979 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.265 0.735 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.676 -4.481 0.429 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.210 4.210 3 C -0.064 4.064 4 C -0.269 4.269 5 C 0.144 3.856 6 N -0.360 5.360 7 C 0.009 3.991 8 C -0.010 4.010 9 N -0.375 5.375 10 C 0.312 3.688 11 O -0.467 6.467 12 C 0.003 3.997 13 H 0.063 0.937 14 C -0.178 4.178 15 C -0.569 4.569 16 H 0.065 0.935 17 C -0.180 4.180 18 N -0.549 5.549 19 Si 0.780 3.220 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.203 1.203 23 N -0.291 5.291 24 C -0.026 4.026 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.174 0.826 29 H 0.164 0.836 30 H 0.240 0.760 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.251 0.749 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -24.663 -5.657 0.421 25.307 hybrid contribution 0.969 0.465 -0.056 1.076 sum -23.694 -5.192 0.365 24.258 Atomic orbital electron populations 1.20607 0.88425 1.03587 1.02764 1.20946 0.98882 0.93608 1.07567 1.21607 0.92961 0.99244 0.92588 1.21673 0.96233 0.97282 1.11676 1.18553 0.85248 0.90036 0.91800 1.44254 1.01625 1.09031 1.81071 1.21363 0.87759 0.86522 1.03461 1.21229 0.90102 0.87655 1.01997 1.45734 1.05484 1.09757 1.76571 1.21568 0.82247 0.92112 0.72912 1.90521 1.72043 1.32954 1.51159 1.18814 0.93755 0.89715 0.97402 0.93724 1.21568 0.99465 1.01158 0.95629 1.21265 0.91454 0.92973 1.51182 0.93453 1.25583 1.02831 0.94910 0.94674 1.69933 1.35006 0.99042 1.50875 0.85673 0.80225 0.77570 0.78526 1.19945 1.20263 1.20280 1.67114 1.09976 1.30336 1.21634 1.22699 0.87877 0.98946 0.93079 0.90873 0.90757 0.90787 0.82552 0.83626 0.76045 0.89793 0.89833 0.92251 0.92228 0.74866 0.95959 0.91127 0.92498 0.92589 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.03 71.24 0.71 -0.12 16 2 C -0.21 -3.10 5.90 -19.76 -0.12 -3.21 16 3 C -0.04 -0.58 9.85 22.44 0.22 -0.36 16 4 C -0.24 -4.44 9.33 22.50 0.21 -4.23 16 5 C 0.38 8.50 7.65 133.06 1.02 9.52 16 6 N -0.73 -15.24 5.73 -345.07 -1.98 -17.21 16 7 C 0.13 2.47 5.00 86.38 0.43 2.90 16 8 C 0.11 2.98 5.79 86.38 0.50 3.48 16 9 N -0.72 -22.31 5.45 -463.07 -2.52 -24.83 16 10 C 0.52 23.19 7.15 87.66 0.63 23.82 16 11 O -0.59 -30.94 15.46 -3.03 -0.05 -30.99 16 12 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16 13 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.12 -5.27 8.86 71.98 0.64 -4.63 16 15 C -0.53 -30.47 8.37 25.60 0.21 -30.25 16 16 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 17 C 0.02 1.07 5.30 84.66 0.45 1.52 16 18 N -0.91 -50.44 11.32 21.45 0.24 -50.20 16 19 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 23 N -0.57 -13.68 10.39 -193.26 -2.01 -15.69 16 24 C 0.13 2.42 10.85 84.62 0.92 3.33 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 27 H 0.07 0.49 8.09 -2.39 -0.02 0.48 16 28 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 29 H 0.15 2.12 6.71 -2.92 -0.02 2.10 16 30 H 0.40 8.68 8.60 -92.71 -0.80 7.88 16 31 H 0.08 1.35 7.93 -2.39 -0.02 1.33 16 32 H 0.08 1.35 7.93 -2.39 -0.02 1.33 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.41 10.06 7.89 -92.70 -0.73 9.33 16 36 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 38 H 0.06 1.93 7.56 -2.38 -0.02 1.91 16 39 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -71.16 336.69 1.04 -70.12 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.47 Total: 19.04 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 5.79 Total: 2.93 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -6.27 Total: -107.93 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.16 1.04 -70.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334759166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.577 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds