Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35234 * 119.65130 * 2 1 4 4 C 1.41352 * 119.25489 * 179.97438 * 3 2 1 5 5 N 1.34322 * 120.67473 * 179.97438 * 4 3 2 6 6 C 1.33238 * 119.99749 * 355.16001 * 5 4 3 7 7 O 1.21940 * 120.00249 * 64.80775 * 6 5 4 8 8 N 1.34774 * 119.99790 * 244.80203 * 6 5 4 9 9 C 1.46499 * 120.00000 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47303 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47059 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47017 * 179.97438 * 11 10 9 13 13 H 1.08009 * 119.99701 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00011 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99716 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99874 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47104 * 89.99686 * 16 14 12 18 18 H 1.48499 * 109.46737 * 209.99415 * 16 14 12 19 19 H 1.48495 * 109.47220 * 329.99632 * 16 14 12 20 20 C 1.41350 * 118.65102 * 359.97438 * 4 3 2 21 21 C 1.35226 * 119.25911 * 0.02562 * 20 4 3 22 22 C 1.50702 * 119.65553 * 180.02562 * 21 20 4 23 23 N 1.35529 * 119.65692 * 179.97438 * 2 1 3 24 24 H 0.97006 * 119.27840 * 0.28398 * 23 2 1 25 25 H 1.08997 * 109.47636 * 270.00006 * 1 2 3 26 26 H 1.09005 * 109.46889 * 30.00523 * 1 2 3 27 27 H 1.09004 * 109.46897 * 149.99586 * 1 2 3 28 28 H 1.07993 * 120.37381 * 0.02562 * 3 2 1 29 29 H 0.97001 * 120.00246 * 0.02562 * 8 6 5 30 30 H 1.09003 * 109.47311 * 300.00078 * 9 8 6 31 31 H 1.09002 * 109.47139 * 60.00141 * 9 8 6 32 32 H 1.09003 * 109.47271 * 299.99836 * 10 9 8 33 33 H 1.09002 * 109.47049 * 59.99913 * 10 9 8 34 34 H 1.08989 * 109.47573 * 299.99813 * 11 10 9 35 35 H 1.08996 * 109.46941 * 60.00577 * 11 10 9 36 36 H 0.97000 * 119.99548 * 179.97438 * 15 14 12 37 37 H 1.08005 * 120.36730 * 180.02562 * 20 4 3 38 38 H 1.09006 * 109.46658 * 269.97267 * 22 21 20 39 39 H 1.08998 * 109.47165 * 29.97117 * 22 21 20 40 40 H 1.08999 * 109.47180 * 149.97799 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1761 1.1753 0.0000 4 6 3.5895 1.1655 0.0006 5 7 4.2828 2.3160 0.0000 6 6 3.6418 3.4799 -0.0983 7 8 2.8863 3.8369 0.7898 8 7 3.8285 4.2627 -1.1794 9 6 3.1242 5.5427 -1.2874 10 6 3.5096 6.2278 -2.6000 11 6 2.7735 7.5644 -2.7130 12 6 3.1536 8.2395 -4.0056 13 1 3.8503 7.7627 -4.6793 14 6 2.6113 9.4653 -4.3286 15 7 2.9435 10.0547 -5.4564 16 14 1.4059 10.2895 -3.1637 17 1 2.1500 11.1488 -2.2080 18 1 0.4560 11.1234 -3.9430 19 1 0.6537 9.2517 -2.4139 20 6 4.2587 -0.0796 0.0016 21 6 3.5324 -1.2203 0.0016 22 6 4.2366 -2.5526 0.0033 23 7 2.1776 -1.1778 0.0005 24 1 1.6771 -2.0087 -0.0033 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6365 2.1107 0.0004 29 1 4.4292 3.9786 -1.8861 30 1 2.0484 5.3680 -1.2714 31 1 3.4010 6.1816 -0.4487 32 1 4.5854 6.4026 -2.6164 33 1 3.2325 5.5888 -3.4384 34 1 1.6979 7.3893 -2.6968 35 1 3.0503 8.2036 -1.8747 36 1 2.5616 10.9169 -5.6838 37 1 5.3380 -0.1194 0.0025 38 1 4.4071 -2.8747 -1.0240 39 1 5.1928 -2.4575 0.5178 40 1 3.6191 -3.2893 0.5173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335428832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = 6.289700 kcal Electronic energy + Delta-G solvation = -20359.981327 eV Core-core repulsion = 17174.928478 eV Total energy + Delta-G solvation = -3185.052849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30233 -39.30094 -35.74071 -34.76613 -34.56931 -33.09177 -31.49118 -30.69194 -29.68387 -27.25186 -26.91899 -23.70022 -22.57279 -22.11578 -20.44104 -19.54152 -18.73286 -17.57203 -16.90252 -16.54671 -15.77230 -15.47468 -15.26351 -14.89882 -14.34753 -13.99989 -13.99434 -13.75360 -13.47384 -13.30276 -12.90066 -12.78456 -12.71984 -12.62866 -12.13585 -11.94211 -11.76039 -11.43833 -10.93574 -10.80836 -10.39952 -9.97437 -9.75429 -9.63537 -9.61007 -9.14328 -8.93071 -8.49246 -8.47143 -7.63378 -5.99624 -3.97515 0.71762 0.99102 2.37627 3.00328 3.32658 3.37053 3.43707 3.49329 3.90475 3.97610 4.17367 4.47613 4.50973 4.61925 4.82126 4.85744 4.94238 4.95458 5.16091 5.22867 5.34677 5.36662 5.44945 5.71052 5.84096 5.87816 5.93626 6.19338 6.34717 6.51021 6.59095 6.61272 6.73799 6.89399 7.05320 7.34168 7.47363 7.81902 7.85498 8.24445 8.58422 9.04363 9.05316 9.63030 11.13767 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.002860 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.567486 B = 9788.579100 C =10064.144393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.161 3.839 3 C -0.248 4.248 4 C 0.318 3.682 5 N -0.634 5.634 6 C 0.668 3.332 7 O -0.601 6.601 8 N -0.724 5.724 9 C 0.125 3.875 10 C -0.112 4.112 11 C -0.011 4.011 12 C -0.519 4.519 13 H 0.072 0.928 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.197 4.197 21 C 0.154 3.846 22 C -0.120 4.120 23 N -0.586 5.586 24 H 0.415 0.585 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.398 0.602 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.152 0.848 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -32.296 11.118 34.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.275 4.275 4 C 0.156 3.844 5 N -0.371 5.371 6 C 0.368 3.632 7 O -0.481 6.481 8 N -0.377 5.377 9 C 0.001 3.999 10 C -0.150 4.150 11 C -0.049 4.049 12 C -0.557 4.557 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.224 4.224 21 C 0.043 3.957 22 C -0.177 4.177 23 N -0.193 5.193 24 H 0.251 0.749 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.168 0.832 29 H 0.231 0.769 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.170 0.830 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.811 -31.313 11.695 33.543 hybrid contribution -1.122 0.419 0.176 1.211 sum -3.933 -30.894 11.872 33.329 Atomic orbital electron populations 1.21050 0.87753 1.04864 1.04365 1.20309 0.94701 0.85286 0.94693 1.21759 0.95362 0.97987 1.12403 1.18709 0.89212 0.91496 0.84975 1.68682 1.36283 0.97456 1.34692 1.17357 0.77856 0.85629 0.82374 1.90917 1.38879 1.78058 1.40258 1.45757 1.48903 1.21935 1.21120 1.21515 0.96057 0.82919 0.99389 1.21696 1.01083 0.98206 0.94046 1.19506 0.95715 0.92074 0.97606 1.21128 1.27212 1.03801 1.03587 0.91004 1.25030 0.96362 0.97048 0.95110 1.69921 1.44528 1.16681 1.23265 0.86768 0.81579 0.79730 0.81200 1.20241 1.21431 1.18882 1.20428 1.01068 0.88618 1.12274 1.20308 0.82368 0.97599 0.95415 1.21013 1.01345 0.91032 1.04335 1.41021 1.05538 1.08636 1.64058 0.74886 0.89235 0.88650 0.90528 0.83169 0.76857 0.92290 0.92185 0.92144 0.92249 0.96362 0.96733 0.92777 0.83015 0.89235 0.88635 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.07 36.01 0.36 -0.16 16 2 C 0.16 1.19 6.80 -82.03 -0.56 0.63 16 3 C -0.25 -3.08 8.65 -39.47 -0.34 -3.43 16 4 C 0.32 4.44 6.60 -84.41 -0.56 3.88 16 5 N -0.63 -11.33 10.53 -14.59 -0.15 -11.48 16 6 C 0.67 13.47 6.92 -88.28 -0.61 12.86 16 7 O -0.60 -13.91 15.81 4.97 0.08 -13.83 16 8 N -0.72 -13.54 5.56 -65.56 -0.36 -13.91 16 9 C 0.13 2.49 5.67 -4.04 -0.02 2.46 16 10 C -0.11 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 12 C -0.52 -15.31 9.66 -34.44 -0.33 -15.65 16 13 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -28.60 13.96 55.43 0.77 -27.83 16 16 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 20 C -0.20 -1.86 9.60 -39.47 -0.38 -2.24 16 21 C 0.15 0.83 6.80 -82.02 -0.56 0.27 16 22 C -0.12 -0.16 10.07 36.01 0.36 0.20 16 23 N -0.59 -2.58 5.24 -5.61 -0.03 -2.61 16 24 H 0.42 0.22 8.64 -40.82 -0.35 -0.14 16 25 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 27 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.15 2.28 6.35 -52.49 -0.33 1.95 16 29 H 0.40 6.66 8.57 -40.82 -0.35 6.31 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.45 7.20 -51.94 -0.37 0.08 16 35 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.09 0.11 8.07 -51.93 -0.42 -0.31 16 40 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -40.18 338.91 -8.27 -48.45 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.03 Total: 0.41 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.99 Total: -2.19 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.23 Total: -55.82 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -40.18 -8.27 -48.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335428832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.743 kcal (2) G-P(sol) polarization free energy of solvation -40.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds