Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35234 * 119.65130 * 2 1 4 4 C 1.41352 * 119.25489 * 179.97438 * 3 2 1 5 5 N 1.34322 * 120.67473 * 179.97438 * 4 3 2 6 6 C 1.33238 * 119.99749 * 355.16001 * 5 4 3 7 7 O 1.21940 * 120.00249 * 64.80775 * 6 5 4 8 8 N 1.34774 * 119.99790 * 244.80203 * 6 5 4 9 9 C 1.46499 * 120.00000 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47303 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47059 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47017 * 179.97438 * 11 10 9 13 13 H 1.08009 * 119.99701 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00011 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99716 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99874 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47104 * 89.99686 * 16 14 12 18 18 H 1.48499 * 109.46737 * 209.99415 * 16 14 12 19 19 H 1.48495 * 109.47220 * 329.99632 * 16 14 12 20 20 C 1.41350 * 118.65102 * 359.97438 * 4 3 2 21 21 C 1.35226 * 119.25911 * 0.02562 * 20 4 3 22 22 C 1.50702 * 119.65553 * 180.02562 * 21 20 4 23 23 N 1.35529 * 119.65692 * 179.97438 * 2 1 3 24 24 H 0.97006 * 119.27840 * 0.28398 * 23 2 1 25 25 H 1.08997 * 109.47636 * 270.00006 * 1 2 3 26 26 H 1.09005 * 109.46889 * 30.00523 * 1 2 3 27 27 H 1.09004 * 109.46897 * 149.99586 * 1 2 3 28 28 H 1.07993 * 120.37381 * 0.02562 * 3 2 1 29 29 H 0.97001 * 120.00246 * 0.02562 * 8 6 5 30 30 H 1.09003 * 109.47311 * 300.00078 * 9 8 6 31 31 H 1.09002 * 109.47139 * 60.00141 * 9 8 6 32 32 H 1.09003 * 109.47271 * 299.99836 * 10 9 8 33 33 H 1.09002 * 109.47049 * 59.99913 * 10 9 8 34 34 H 1.08989 * 109.47573 * 299.99813 * 11 10 9 35 35 H 1.08996 * 109.46941 * 60.00577 * 11 10 9 36 36 H 0.97000 * 119.99548 * 179.97438 * 15 14 12 37 37 H 1.08005 * 120.36730 * 180.02562 * 20 4 3 38 38 H 1.09006 * 109.46658 * 269.97267 * 22 21 20 39 39 H 1.08998 * 109.47165 * 29.97117 * 22 21 20 40 40 H 1.08999 * 109.47180 * 149.97799 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1761 1.1753 0.0000 4 6 3.5895 1.1655 0.0006 5 7 4.2828 2.3160 0.0000 6 6 3.6418 3.4799 -0.0983 7 8 2.8863 3.8369 0.7898 8 7 3.8285 4.2627 -1.1794 9 6 3.1242 5.5427 -1.2874 10 6 3.5096 6.2278 -2.6000 11 6 2.7735 7.5644 -2.7130 12 6 3.1536 8.2395 -4.0056 13 1 3.8503 7.7627 -4.6793 14 6 2.6113 9.4653 -4.3286 15 7 2.9435 10.0547 -5.4564 16 14 1.4059 10.2895 -3.1637 17 1 2.1500 11.1488 -2.2080 18 1 0.4560 11.1234 -3.9430 19 1 0.6537 9.2517 -2.4139 20 6 4.2587 -0.0796 0.0016 21 6 3.5324 -1.2203 0.0016 22 6 4.2366 -2.5526 0.0033 23 7 2.1776 -1.1778 0.0005 24 1 1.6771 -2.0087 -0.0033 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6365 2.1107 0.0004 29 1 4.4292 3.9786 -1.8861 30 1 2.0484 5.3680 -1.2714 31 1 3.4010 6.1816 -0.4487 32 1 4.5854 6.4026 -2.6164 33 1 3.2325 5.5888 -3.4384 34 1 1.6979 7.3893 -2.6968 35 1 3.0503 8.2036 -1.8747 36 1 2.5616 10.9169 -5.6838 37 1 5.3380 -0.1194 0.0025 38 1 4.4071 -2.8747 -1.0240 39 1 5.1928 -2.4575 0.5178 40 1 3.6191 -3.2893 0.5173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335428832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -26.322905 kcal Electronic energy + Delta-G solvation = -20361.395516 eV Core-core repulsion = 17174.928478 eV Total energy + Delta-G solvation = -3186.467037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.06655 -40.61508 -37.20827 -36.03622 -35.15315 -35.07242 -33.31280 -31.75126 -30.18675 -28.76703 -27.81524 -25.12628 -23.61561 -23.12511 -22.24511 -20.90362 -19.47764 -19.00999 -18.50873 -17.68341 -17.19188 -16.58033 -16.31862 -16.12805 -15.79716 -15.57202 -14.95257 -14.78515 -14.29776 -14.22471 -14.02016 -13.86575 -13.65302 -13.28031 -13.15712 -13.09106 -12.83625 -12.76757 -12.72961 -12.43196 -11.94778 -11.82512 -11.65769 -11.58195 -11.36600 -10.78179 -10.27975 -10.20875 -9.94543 -8.61571 -8.31220 -6.35419 -0.06605 0.24025 1.35830 1.36338 1.49653 1.78396 1.81200 2.22111 2.35242 2.81068 3.03838 3.44926 3.53187 3.93550 4.03112 4.07973 4.13383 4.20662 4.32530 4.44876 4.55784 4.61622 4.69570 4.79350 4.82955 4.84347 4.98575 5.03075 5.14867 5.15888 5.25215 5.37319 5.50368 5.51986 5.56637 5.62707 5.80130 6.19414 6.25514 6.62907 6.71327 6.94138 7.29023 7.71558 8.85379 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.002860 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.567486 B = 9788.579100 C =10064.144393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.205 3.795 3 C -0.303 4.303 4 C 0.308 3.692 5 N -0.698 5.698 6 C 0.671 3.329 7 O -0.649 6.649 8 N -0.723 5.723 9 C 0.139 3.861 10 C -0.097 4.097 11 C -0.009 4.009 12 C -0.532 4.532 13 H 0.036 0.964 14 C 0.006 3.994 15 N -0.949 5.949 16 Si 0.949 3.051 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.249 1.249 20 C -0.233 4.233 21 C 0.196 3.804 22 C -0.119 4.119 23 N -0.556 5.556 24 H 0.444 0.556 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.405 0.595 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.267 0.733 37 H 0.157 0.843 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 -36.713 12.269 39.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.090 3.910 3 C -0.330 4.330 4 C 0.156 3.844 5 N -0.443 5.443 6 C 0.372 3.628 7 O -0.533 6.533 8 N -0.376 5.376 9 C 0.015 3.985 10 C -0.135 4.135 11 C -0.047 4.047 12 C -0.570 4.570 13 H 0.054 0.946 14 C -0.191 4.191 15 N -0.590 5.590 16 Si 0.773 3.227 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.173 1.173 20 C -0.259 4.259 21 C 0.082 3.918 22 C -0.176 4.176 23 N -0.161 5.161 24 H 0.286 0.714 25 H 0.124 0.876 26 H 0.101 0.899 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.240 0.760 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.174 0.826 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.663 -35.869 12.834 38.380 hybrid contribution -0.618 1.357 -0.224 1.507 sum -5.281 -34.512 12.610 37.121 Atomic orbital electron populations 1.21232 0.84810 1.06366 1.05786 1.20606 0.96297 0.84576 0.89528 1.21521 0.95057 0.98729 1.17737 1.19308 0.90191 0.91916 0.83022 1.68565 1.35724 0.97504 1.42462 1.17667 0.76893 0.86580 0.81666 1.90832 1.41488 1.79100 1.41861 1.45678 1.49051 1.21465 1.21379 1.21206 0.95962 0.83435 0.97944 1.21470 1.00507 0.96586 0.94932 1.19447 0.96353 0.93574 0.95334 1.21427 1.26570 1.04260 1.04783 0.94555 1.25985 0.98461 0.97777 0.96903 1.70059 1.46140 1.17426 1.25345 0.85668 0.79165 0.78934 0.78981 1.19300 1.20482 1.17274 1.20560 1.01876 0.88110 1.15367 1.20937 0.82384 0.98412 0.90078 1.21246 1.01697 0.88508 1.06131 1.41296 1.05748 1.09087 1.60018 0.71440 0.87601 0.89850 0.86365 0.86847 0.76018 0.92626 0.93363 0.92222 0.91796 0.95819 0.96332 0.92378 0.82560 0.87187 0.87968 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.62 10.07 71.24 0.72 0.10 16 2 C 0.20 2.48 6.80 41.30 0.28 2.76 16 3 C -0.30 -7.83 8.65 22.34 0.19 -7.63 16 4 C 0.31 9.06 6.60 40.29 0.27 9.32 16 5 N -0.70 -27.06 10.53 -319.04 -3.36 -30.42 16 6 C 0.67 29.32 6.92 179.53 1.24 30.56 16 7 O -0.65 -32.51 15.81 -5.12 -0.08 -32.59 16 8 N -0.72 -28.88 5.56 -479.45 -2.67 -31.54 16 9 C 0.14 5.78 5.67 86.38 0.49 6.27 16 10 C -0.10 -4.20 5.27 30.60 0.16 -4.04 16 11 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 12 C -0.53 -32.23 9.66 25.60 0.25 -31.98 16 13 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 14 C 0.01 0.34 5.47 84.65 0.46 0.81 16 15 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 16 Si 0.95 46.56 27.47 68.60 1.88 48.44 16 17 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 19 H -0.25 -11.53 6.54 99.48 0.65 -10.88 16 20 C -0.23 -4.17 9.60 22.34 0.21 -3.96 16 21 C 0.20 1.32 6.80 41.29 0.28 1.60 16 22 C -0.12 0.35 10.07 71.24 0.72 1.07 16 23 N -0.56 -2.19 5.24 -171.67 -0.90 -3.09 16 24 H 0.44 -2.64 8.64 -92.70 -0.80 -3.44 16 25 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.08 0.74 8.07 -2.38 -0.02 0.72 16 27 H 0.12 -0.32 8.14 -2.38 -0.02 -0.34 16 28 H 0.11 3.82 6.35 -2.91 -0.02 3.80 16 29 H 0.40 14.53 8.57 -92.71 -0.79 13.74 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.56 16 33 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.02 1.17 7.20 -2.39 -0.02 1.15 16 35 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 36 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 37 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 38 H 0.11 -0.55 8.14 -2.38 -0.02 -0.57 16 39 H 0.10 -0.26 8.07 -2.39 -0.02 -0.28 16 40 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 Total: -1.00 -96.18 338.91 -0.02 -96.20 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -0.60 Total: 9.49 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.40 Total: 4.54 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -6.62 Total: -126.09 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.08 Total: -32.59 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Total: -96.18 -0.02 -96.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335428832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.876 kcal (2) G-P(sol) polarization free energy of solvation -96.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds