Wall clock time and date at job start Mon Mar 30 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00445 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47623 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47283 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00206 * 180.02562 * 9 8 7 11 11 O 1.21285 * 120.00098 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00297 * 179.97438 * 10 9 8 13 13 C 1.53004 * 109.47441 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47441 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99859 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00332 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99858 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00329 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46954 * 59.99975 * 18 16 14 20 20 H 1.48503 * 109.47068 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46629 * 299.99958 * 18 16 14 22 22 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 23 23 C 1.31970 * 121.62524 * 359.97438 * 22 5 4 24 24 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 25 25 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 26 26 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 27 27 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 29 29 H 0.97002 * 119.99871 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.47011 * 300.00902 * 7 6 5 31 31 H 1.09010 * 109.46557 * 60.00012 * 7 6 5 32 32 H 1.09005 * 109.46709 * 300.00119 * 8 7 6 33 33 H 1.09000 * 109.47098 * 59.99825 * 8 7 6 34 34 H 0.97002 * 120.00023 * 359.97438 * 9 8 7 35 35 H 1.08997 * 109.47271 * 299.99828 * 12 10 9 36 36 H 1.09008 * 109.47190 * 59.99928 * 12 10 9 37 37 H 1.09005 * 109.46674 * 299.99912 * 13 12 10 38 38 H 1.09000 * 109.47066 * 59.99576 * 13 12 10 39 39 H 0.97002 * 120.00359 * 179.97438 * 17 16 14 40 40 H 1.08004 * 119.56936 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4028 1.0947 -0.0033 8 6 7.8938 0.7513 -0.0051 9 7 8.6796 1.9877 -0.0051 10 6 10.0261 1.9303 -0.0071 11 8 10.5873 0.8551 -0.0084 12 6 10.8345 3.2021 -0.0077 13 6 12.3256 2.8588 -0.0094 14 6 13.1340 4.1305 -0.0106 15 1 12.6343 5.0880 -0.0106 16 6 14.5114 4.0719 -0.0116 17 7 15.1199 2.9059 -0.0121 18 14 15.5135 5.6483 -0.0124 19 1 15.1892 6.4416 1.2004 20 1 16.9607 5.3150 -0.0142 21 1 15.1873 6.4416 -1.2247 22 7 3.5237 -1.2034 -0.0026 23 6 2.2040 -1.1913 -0.0021 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6863 2.1440 -0.0004 28 1 4.1676 2.0674 -0.0050 29 1 6.0656 -1.0016 -0.0038 30 1 6.1633 1.6771 -0.8930 31 1 6.1647 1.6769 0.8870 32 1 8.1335 0.1688 0.8845 33 1 8.1315 0.1693 -0.8955 34 1 8.2309 2.8477 -0.0044 35 1 10.5946 3.7848 -0.8970 36 1 10.5971 3.7840 0.8830 37 1 12.5652 2.2763 0.8803 38 1 12.5633 2.2767 -0.8997 39 1 16.0891 2.8645 -0.0133 40 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336552058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:25 Heat of formation + Delta-G solvation = -16.046807 kcal Electronic energy + Delta-G solvation = -19665.194942 eV Core-core repulsion = 16479.173510 eV Total energy + Delta-G solvation = -3186.021432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.54159 -39.25928 -36.92401 -34.57686 -33.47129 -33.20833 -31.62821 -31.01343 -29.05254 -26.42375 -25.43016 -24.22488 -22.87051 -21.65055 -21.48540 -19.71306 -18.05191 -17.21785 -16.76473 -15.98591 -15.68328 -15.59565 -15.34478 -14.89666 -14.59260 -14.42425 -14.33695 -14.24756 -13.35338 -13.28824 -13.10882 -12.74840 -12.61129 -12.20993 -12.05763 -11.85806 -11.83611 -11.19046 -10.92239 -10.63397 -10.32649 -10.00827 -9.98000 -9.70081 -9.69623 -9.24587 -9.07533 -8.92485 -8.33148 -7.92279 -5.97208 -4.01976 1.01036 1.15501 2.62452 3.18057 3.33550 3.38296 3.39803 3.62460 3.66105 4.32635 4.43054 4.46505 4.54532 4.72101 4.76624 4.79113 4.88990 5.05683 5.23421 5.27687 5.37583 5.43593 5.52139 5.58420 5.63191 5.74355 5.78926 6.03951 6.18832 6.19953 6.28609 6.55352 6.70514 6.85379 7.25318 7.71988 7.76932 7.83824 7.90584 8.05370 8.36464 8.69666 9.06250 9.61621 11.13648 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.060199 B = 0.002108 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.012011 B =13278.684596 C =13707.342458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.206 4.206 3 C -0.033 4.033 4 C -0.236 4.236 5 C 0.401 3.599 6 N -0.722 5.722 7 C 0.119 3.881 8 C 0.110 3.890 9 N -0.742 5.742 10 C 0.511 3.489 11 O -0.532 6.532 12 C -0.129 4.129 13 C 0.036 3.964 14 C -0.529 4.529 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.543 5.543 23 C 0.150 3.850 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.408 0.592 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.541 -3.029 0.018 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.211 4.211 3 C -0.059 4.059 4 C -0.261 4.261 5 C 0.165 3.835 6 N -0.355 5.355 7 C -0.006 4.006 8 C -0.015 4.015 9 N -0.398 5.398 10 C 0.300 3.700 11 O -0.406 6.406 12 C -0.169 4.169 13 C -0.001 4.001 14 C -0.567 4.567 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 N -0.259 5.259 23 C -0.008 4.008 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.244 0.756 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.357 -4.516 0.018 28.715 hybrid contribution 0.114 1.711 -0.007 1.715 sum -28.243 -2.805 0.011 28.382 Atomic orbital electron populations 1.20559 0.90527 1.02567 1.01995 1.20598 0.97351 0.94059 1.09073 1.21219 0.93216 0.98024 0.93451 1.21420 0.95391 0.97355 1.11901 1.18302 0.85091 0.89380 0.90681 1.44243 1.01615 1.08999 1.80667 1.21488 0.90256 0.86715 1.02153 1.21242 0.88398 0.88709 1.03185 1.46017 1.06933 1.08253 1.78595 1.21611 0.81051 0.93097 0.74267 1.90686 1.70546 1.31475 1.47917 1.21874 0.99529 0.92891 1.02604 1.18907 0.85822 0.96733 0.98663 1.21177 0.91354 0.92547 1.51625 0.92623 1.25030 0.98029 0.96056 0.95276 1.69988 1.09113 1.23679 1.50014 0.86639 0.79103 0.83568 0.78529 1.20251 1.21279 1.20258 1.67142 1.08751 1.29509 1.20538 1.22284 0.88288 0.97466 0.92788 0.91649 0.91687 0.91853 0.85103 0.85057 0.75618 0.91190 0.91173 0.91044 0.91041 0.76731 0.90106 0.90107 0.95800 0.95804 0.92869 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.03 36.01 0.36 -0.13 16 2 C -0.21 -1.59 5.90 -104.46 -0.62 -2.21 16 3 C -0.03 -0.26 9.85 -39.32 -0.39 -0.65 16 4 C -0.24 -2.09 9.33 -39.22 -0.37 -2.45 16 5 C 0.40 4.22 7.65 -155.03 -1.19 3.04 16 6 N -0.72 -6.83 5.73 -60.42 -0.35 -7.18 16 7 C 0.12 0.97 5.01 -4.04 -0.02 0.95 16 8 C 0.11 1.21 5.79 -4.05 -0.02 1.19 16 9 N -0.74 -9.43 5.56 -60.30 -0.33 -9.77 16 10 C 0.51 9.46 7.83 -10.99 -0.09 9.38 16 11 O -0.53 -12.33 15.98 5.55 0.09 -12.24 16 12 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 13 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 14 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 15 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 N -0.54 -6.10 10.39 -12.44 -0.13 -6.23 16 23 C 0.15 1.34 10.85 -17.57 -0.19 1.15 16 24 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 25 H 0.06 0.26 8.09 -51.93 -0.42 -0.16 16 26 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 27 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 28 H 0.13 0.94 6.71 -52.49 -0.35 0.59 16 29 H 0.41 3.84 8.60 -40.82 -0.35 3.49 16 30 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 31 H 0.07 0.51 7.93 -51.92 -0.41 0.10 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -35.38 343.39 -9.09 -44.46 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.05 Total: 1.06 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.20 Total: -5.19 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.07 Total: -49.80 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.38 -9.09 -44.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336552058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.416 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds