Wall clock time and date at job start Mon Mar 30 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00445 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47623 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47283 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00206 * 180.02562 * 9 8 7 11 11 O 1.21285 * 120.00098 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00297 * 179.97438 * 10 9 8 13 13 C 1.53004 * 109.47441 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47441 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99859 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00332 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99858 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00329 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46954 * 59.99975 * 18 16 14 20 20 H 1.48503 * 109.47068 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46629 * 299.99958 * 18 16 14 22 22 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 23 23 C 1.31970 * 121.62524 * 359.97438 * 22 5 4 24 24 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 25 25 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 26 26 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 27 27 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 29 29 H 0.97002 * 119.99871 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.47011 * 300.00902 * 7 6 5 31 31 H 1.09010 * 109.46557 * 60.00012 * 7 6 5 32 32 H 1.09005 * 109.46709 * 300.00119 * 8 7 6 33 33 H 1.09000 * 109.47098 * 59.99825 * 8 7 6 34 34 H 0.97002 * 120.00023 * 359.97438 * 9 8 7 35 35 H 1.08997 * 109.47271 * 299.99828 * 12 10 9 36 36 H 1.09008 * 109.47190 * 59.99928 * 12 10 9 37 37 H 1.09005 * 109.46674 * 299.99912 * 13 12 10 38 38 H 1.09000 * 109.47066 * 59.99576 * 13 12 10 39 39 H 0.97002 * 120.00359 * 179.97438 * 17 16 14 40 40 H 1.08004 * 119.56936 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4028 1.0947 -0.0033 8 6 7.8938 0.7513 -0.0051 9 7 8.6796 1.9877 -0.0051 10 6 10.0261 1.9303 -0.0071 11 8 10.5873 0.8551 -0.0084 12 6 10.8345 3.2021 -0.0077 13 6 12.3256 2.8588 -0.0094 14 6 13.1340 4.1305 -0.0106 15 1 12.6343 5.0880 -0.0106 16 6 14.5114 4.0719 -0.0116 17 7 15.1199 2.9059 -0.0121 18 14 15.5135 5.6483 -0.0124 19 1 15.1892 6.4416 1.2004 20 1 16.9607 5.3150 -0.0142 21 1 15.1873 6.4416 -1.2247 22 7 3.5237 -1.2034 -0.0026 23 6 2.2040 -1.1913 -0.0021 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6863 2.1440 -0.0004 28 1 4.1676 2.0674 -0.0050 29 1 6.0656 -1.0016 -0.0038 30 1 6.1633 1.6771 -0.8930 31 1 6.1647 1.6769 0.8870 32 1 8.1335 0.1688 0.8845 33 1 8.1315 0.1693 -0.8955 34 1 8.2309 2.8477 -0.0044 35 1 10.5946 3.7848 -0.8970 36 1 10.5971 3.7840 0.8830 37 1 12.5652 2.2763 0.8803 38 1 12.5633 2.2767 -0.8997 39 1 16.0891 2.8645 -0.0133 40 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336552058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:24 Heat of formation + Delta-G solvation = -41.433007 kcal Electronic energy + Delta-G solvation = -19666.295770 eV Core-core repulsion = 16479.173510 eV Total energy + Delta-G solvation = -3187.122261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19532 -40.68462 -37.75533 -35.70429 -35.47806 -33.92814 -33.03869 -32.15656 -30.02751 -27.74663 -26.61175 -24.94579 -24.00578 -23.02128 -22.30668 -21.18614 -18.85648 -18.72865 -17.83540 -17.29044 -16.99013 -16.78449 -16.37826 -16.06000 -15.91015 -15.31003 -15.18738 -15.03813 -14.62274 -14.27657 -14.13412 -13.85724 -13.74012 -13.24007 -13.15587 -12.95983 -12.83398 -12.74763 -12.49934 -12.41893 -11.89297 -11.63103 -11.31639 -10.93981 -10.80437 -10.65320 -10.55398 -10.35406 -10.13847 -8.56704 -8.17060 -6.31221 0.38185 0.53557 1.42954 1.47444 1.55119 1.69827 1.77812 2.42422 2.64170 2.98005 3.15932 3.59264 3.77364 3.99929 4.00932 4.08933 4.19431 4.27404 4.32819 4.34098 4.52762 4.58025 4.73818 4.81022 4.82320 4.94168 4.99518 5.10249 5.16538 5.22691 5.38160 5.49614 5.51728 5.64495 5.72030 5.86539 6.05514 6.18314 6.52885 6.59137 6.87542 7.24143 7.32983 7.39246 8.95329 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.060199 B = 0.002108 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.012011 B =13278.684596 C =13707.342458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.205 4.205 3 C -0.039 4.039 4 C -0.242 4.242 5 C 0.378 3.622 6 N -0.728 5.728 7 C 0.133 3.867 8 C 0.112 3.888 9 N -0.713 5.713 10 C 0.512 3.488 11 O -0.590 6.590 12 C -0.118 4.118 13 C 0.039 3.961 14 C -0.543 4.543 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.262 1.262 22 N -0.574 5.574 23 C 0.130 3.870 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.157 0.843 28 H 0.149 0.851 29 H 0.404 0.596 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.421 0.579 35 H 0.108 0.892 36 H 0.108 0.892 37 H -0.019 1.019 38 H -0.019 1.019 39 H 0.262 0.738 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.987 -0.160 0.032 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.210 4.210 3 C -0.064 4.064 4 C -0.266 4.266 5 C 0.143 3.857 6 N -0.362 5.362 7 C 0.008 3.992 8 C -0.012 4.012 9 N -0.368 5.368 10 C 0.301 3.699 11 O -0.469 6.469 12 C -0.158 4.158 13 C 0.002 3.998 14 C -0.581 4.581 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.798 3.202 19 H -0.187 1.187 20 H -0.215 1.215 21 H -0.187 1.187 22 N -0.292 5.292 23 C -0.027 4.027 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.175 0.825 28 H 0.167 0.833 29 H 0.239 0.761 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.259 0.741 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.000 1.000 38 H 0.000 1.000 39 H 0.071 0.929 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -30.899 -1.597 0.032 30.940 hybrid contribution 0.762 0.756 -0.012 1.074 sum -30.137 -0.841 0.020 30.149 Atomic orbital electron populations 1.20609 0.88514 1.03568 1.02751 1.20945 0.98845 0.93667 1.07535 1.21614 0.93056 0.99179 0.92584 1.21677 0.96146 0.97272 1.11537 1.18563 0.85291 0.90033 0.91825 1.44268 1.01612 1.09130 1.81146 1.21388 0.87579 0.86498 1.03690 1.21256 0.90202 0.87596 1.02171 1.45604 1.05081 1.10166 1.75974 1.21367 0.82787 0.91730 0.74023 1.90675 1.72118 1.33139 1.51004 1.21638 0.94963 0.94001 1.05187 1.18713 0.90993 0.95453 0.94682 1.21706 0.91986 0.93672 1.50763 0.90392 1.26157 0.99758 0.99979 0.94692 1.70178 1.09428 1.26745 1.51482 0.85363 0.76690 0.78633 0.79482 1.18654 1.21510 1.18667 1.67101 1.09970 1.30506 1.21627 1.22679 0.87904 0.98929 0.93168 0.90895 0.90857 0.90743 0.82493 0.83317 0.76109 0.89563 0.89548 0.92181 0.92176 0.74099 0.87392 0.87395 1.00007 1.00013 0.92916 0.81428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.03 71.24 0.71 -0.01 16 2 C -0.21 -2.80 5.90 -19.76 -0.12 -2.91 16 3 C -0.04 -0.51 9.85 22.44 0.22 -0.29 16 4 C -0.24 -3.78 9.33 22.50 0.21 -3.57 16 5 C 0.38 7.64 7.65 133.07 1.02 8.66 16 6 N -0.73 -13.29 5.73 -345.07 -1.98 -15.27 16 7 C 0.13 1.90 5.01 86.38 0.43 2.34 16 8 C 0.11 2.40 5.79 86.38 0.50 2.90 16 9 N -0.71 -16.85 5.56 -463.07 -2.57 -19.42 16 10 C 0.51 18.89 7.83 87.66 0.69 19.57 16 11 O -0.59 -28.53 15.98 -3.05 -0.05 -28.58 16 12 C -0.12 -4.53 5.64 29.85 0.17 -4.36 16 13 C 0.04 2.16 4.26 29.85 0.13 2.29 16 14 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 16 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 17 N -0.94 -59.59 13.29 21.45 0.28 -59.31 16 18 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 22 N -0.57 -12.83 10.39 -193.26 -2.01 -14.84 16 23 C 0.13 2.24 10.85 84.62 0.92 3.15 16 24 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 26 H 0.07 0.41 8.09 -2.39 -0.02 0.39 16 27 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 28 H 0.15 1.66 6.71 -2.91 -0.02 1.64 16 29 H 0.40 7.75 8.60 -92.71 -0.80 6.95 16 30 H 0.09 1.00 7.92 -2.39 -0.02 0.98 16 31 H 0.09 1.00 7.93 -2.38 -0.02 0.98 16 32 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.42 6.34 8.47 -92.71 -0.79 5.55 16 35 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 37 H -0.02 -1.16 8.10 -2.38 -0.02 -1.18 16 38 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 39 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -81.04 343.39 0.75 -80.29 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -0.53 Total: 13.72 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.57 Total: -2.61 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -6.27 Total: -108.84 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -81.04 0.75 -80.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336552058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.859 kcal (2) G-P(sol) polarization free energy of solvation -81.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds