Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32154 * 120.53985 * 2 1 4 4 C 1.31856 * 120.97147 * 180.02562 * 3 2 1 5 5 N 1.31887 * 122.09193 * 0.02562 * 4 3 2 6 6 C 1.32128 * 120.96999 * 359.97438 * 5 4 3 7 7 C 1.39929 * 120.53599 * 180.02562 * 2 1 3 8 8 C 1.47834 * 120.93929 * 0.02562 * 7 2 1 9 9 O 1.21551 * 120.00302 * 52.10066 * 8 7 2 10 10 N 1.34776 * 119.99613 * 232.09663 * 8 7 2 11 11 C 1.46505 * 119.99855 * 185.45242 * 10 8 7 12 12 C 1.50700 * 109.46942 * 90.00100 * 11 10 8 13 13 H 1.07998 * 120.00349 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99974 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99896 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99890 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46774 * 90.00522 * 16 14 12 18 18 H 1.48497 * 109.47234 * 209.99988 * 16 14 12 19 19 H 1.48501 * 109.47263 * 330.00525 * 16 14 12 20 20 C 1.46502 * 120.00431 * 5.45523 * 10 8 7 21 21 C 1.52998 * 109.47145 * 96.13188 * 20 10 8 22 22 C 1.53000 * 109.46999 * 174.38375 * 21 20 10 23 23 C 1.52990 * 109.47413 * 294.38612 * 21 20 10 24 24 H 1.09006 * 109.46819 * 94.52593 * 1 2 3 25 25 H 1.09001 * 109.47578 * 214.52035 * 1 2 3 26 26 H 1.09002 * 109.47239 * 334.52817 * 1 2 3 27 27 H 1.08001 * 118.95180 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.54300 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.47215 * 209.99870 * 11 10 8 30 30 H 1.09000 * 109.47185 * 330.00151 * 11 10 8 31 31 H 0.97003 * 119.99743 * 179.97438 * 15 14 12 32 32 H 1.08999 * 109.46944 * 216.13787 * 20 10 8 33 33 H 1.08996 * 109.46630 * 336.13243 * 20 10 8 34 34 H 1.09006 * 109.46714 * 54.38954 * 21 20 10 35 35 H 1.09003 * 109.46969 * 59.99937 * 22 21 20 36 36 H 1.08991 * 109.47103 * 180.02562 * 22 21 20 37 37 H 1.08995 * 109.47337 * 300.00534 * 22 21 20 38 38 H 1.09004 * 109.47312 * 305.20907 * 23 21 20 39 39 H 1.09008 * 109.47395 * 65.20168 * 23 21 20 40 40 H 1.08995 * 109.47290 * 185.20397 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4971 1.1481 -0.0005 5 7 4.2061 0.0361 -0.0015 6 6 3.6165 -1.1463 -0.0016 7 6 2.2180 -1.2052 -0.0005 8 6 1.5120 -2.5041 -0.0017 9 8 0.6539 -2.7288 -0.8328 10 7 1.8199 -3.4392 0.9188 11 6 1.2078 -4.7682 0.8459 12 6 2.0712 -5.6734 0.0054 13 1 2.9841 -5.2963 -0.4312 14 6 1.6949 -6.9827 -0.2071 15 7 2.4485 -7.7728 -0.9402 16 14 0.1153 -7.6348 0.5475 17 1 -1.0103 -7.4188 -0.3968 18 1 0.2601 -9.0872 0.8209 19 1 -0.1596 -6.9168 1.8180 20 6 2.7666 -3.1266 1.9923 21 6 1.9960 -2.7066 3.2456 22 6 2.9747 -2.5155 4.4059 23 6 1.2617 -1.3917 2.9760 24 1 -0.3633 -0.0811 -1.0245 25 1 -0.3634 -0.8467 0.5824 26 1 -0.3634 0.9278 0.4420 27 1 4.0127 2.0971 -0.0009 28 1 4.2039 -2.0526 -0.0020 29 1 1.1174 -5.1822 1.8502 30 1 0.2185 -4.6885 0.3953 31 1 2.1840 -8.6940 -1.0894 32 1 3.3683 -4.0079 2.2141 33 1 3.4181 -2.3119 1.6763 34 1 1.2729 -3.4803 3.5038 35 1 3.6979 -1.7419 4.1477 36 1 2.4257 -2.2168 5.2988 37 1 3.4979 -3.4522 4.5979 38 1 1.9733 -0.6427 2.6285 39 1 0.4999 -1.5508 2.2127 40 1 0.7886 -1.0448 3.8947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338195117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -11.257867 kcal Electronic energy + Delta-G solvation = -22565.024892 eV Core-core repulsion = 19379.211123 eV Total energy + Delta-G solvation = -3185.813768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.51813 -40.53783 -37.90511 -35.71924 -35.37293 -34.30151 -33.76094 -30.58420 -29.46345 -28.14927 -27.28945 -26.17494 -24.53774 -23.79559 -21.57642 -20.47691 -19.16369 -18.96345 -18.35317 -17.87671 -17.36718 -16.49648 -16.03179 -15.79103 -15.59965 -15.19020 -15.04172 -14.56497 -14.48399 -14.18894 -14.00655 -13.97286 -13.57208 -13.29124 -13.21965 -12.99146 -12.83206 -12.68003 -12.54470 -12.29474 -11.93640 -11.85617 -11.77111 -11.70660 -11.51998 -10.92695 -10.83176 -10.53855 -10.42938 -9.48610 -8.33964 -6.39513 -0.50674 -0.15476 1.33673 1.37289 1.45240 1.61112 2.07566 2.30897 2.59516 2.92153 3.00359 3.07322 3.24989 3.39078 3.78844 3.83778 3.94492 4.14931 4.25815 4.34287 4.39540 4.55085 4.60755 4.68816 4.71722 4.76832 4.84293 4.87542 4.91834 4.96124 5.03388 5.18748 5.25896 5.32339 5.40106 5.43989 5.53932 5.75140 6.20794 6.50384 6.62200 6.90093 7.10825 7.27297 8.82533 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.006158 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.225084 B = 4545.554185 C = 4927.512388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.221 3.779 3 N -0.524 5.524 4 C 0.310 3.690 5 N -0.528 5.528 6 C 0.181 3.819 7 C -0.234 4.234 8 C 0.564 3.436 9 O -0.572 6.572 10 N -0.583 5.583 11 C 0.227 3.773 12 C -0.538 4.538 13 H 0.033 0.967 14 C 0.015 3.985 15 N -0.943 5.943 16 Si 0.943 3.057 17 H -0.275 1.275 18 H -0.277 1.277 19 H -0.237 1.237 20 C 0.102 3.898 21 C -0.112 4.112 22 C -0.136 4.136 23 C -0.138 4.138 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.240 0.760 28 H 0.174 0.826 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.268 0.732 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 17.042 10.807 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 N -0.239 5.239 4 C 0.023 3.977 5 N -0.242 5.242 6 C 0.015 3.985 7 C -0.242 4.242 8 C 0.350 3.650 9 O -0.452 6.452 10 N -0.311 5.311 11 C 0.105 3.895 12 C -0.576 4.576 13 H 0.051 0.949 14 C -0.183 4.183 15 N -0.583 5.583 16 Si 0.765 3.235 17 H -0.201 1.201 18 H -0.202 1.202 19 H -0.160 1.160 20 C -0.020 4.020 21 C -0.131 4.131 22 C -0.194 4.194 23 C -0.195 4.195 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.125 0.875 27 H 0.256 0.744 28 H 0.191 0.809 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.297 17.610 10.334 20.420 hybrid contribution -0.688 -1.836 -0.461 2.014 sum -0.986 15.774 9.873 18.635 Atomic orbital electron populations 1.20899 0.86535 1.04547 1.04347 1.21946 0.98329 0.86415 0.85828 1.68438 1.10909 1.28654 1.15898 1.25972 0.86508 0.98175 0.87003 1.68555 1.41323 0.98770 1.15579 1.23510 0.90393 0.97318 0.87272 1.21539 0.96986 0.95541 1.10147 1.18117 0.82314 0.83548 0.80979 1.90739 1.34362 1.80647 1.39458 1.47835 1.44183 1.12225 1.26891 1.19376 0.93504 0.79390 0.97198 1.21525 1.08306 0.95914 1.31869 0.94863 1.25784 1.00495 0.96930 0.95128 1.70039 1.40412 1.07410 1.40406 0.85790 0.79103 0.78150 0.80413 1.20109 1.20198 1.15973 1.22066 0.91439 1.01845 0.86669 1.21512 0.98513 0.98140 0.94960 1.21709 0.98619 1.02284 0.96767 1.21837 0.99591 0.96248 1.01799 0.89205 0.90904 0.87469 0.74390 0.80874 0.93012 0.95678 0.92260 0.90138 0.89690 0.91318 0.92176 0.91030 0.92064 0.93770 0.94340 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 9.11 71.24 0.65 -2.02 16 2 C 0.22 6.19 5.98 42.92 0.26 6.44 16 3 N -0.52 -12.82 10.36 -187.06 -1.94 -14.76 16 4 C 0.31 6.55 12.27 180.84 2.22 8.77 16 5 N -0.53 -13.33 10.42 -198.97 -2.07 -15.40 16 6 C 0.18 5.23 8.77 85.07 0.75 5.98 16 7 C -0.23 -7.48 3.54 -19.91 -0.07 -7.55 16 8 C 0.56 22.58 5.09 86.78 0.44 23.02 16 9 O -0.57 -27.53 15.69 -3.88 -0.06 -27.59 16 10 N -0.58 -22.91 2.27 -829.57 -1.88 -24.79 16 11 C 0.23 10.62 4.29 85.63 0.37 10.98 16 12 C -0.54 -30.57 9.94 25.60 0.25 -30.32 16 13 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 14 C 0.02 0.87 5.47 84.66 0.46 1.33 16 15 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 16 Si 0.94 43.22 27.47 68.60 1.88 45.10 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 20 C 0.10 3.10 4.72 86.38 0.41 3.50 16 21 C -0.11 -2.74 3.11 -10.80 -0.03 -2.77 16 22 C -0.14 -2.54 9.19 71.98 0.66 -1.88 16 23 C -0.14 -3.18 7.63 71.98 0.55 -2.63 16 24 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.07 2.00 5.67 -2.39 -0.01 1.98 16 26 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.24 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.17 4.95 7.40 -2.91 -0.02 4.93 16 29 H 0.05 2.23 7.05 -2.39 -0.02 2.21 16 30 H 0.03 1.26 6.78 -2.39 -0.02 1.24 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.08 2.55 8.12 -2.39 -0.02 2.53 16 33 H 0.09 2.32 4.20 -2.39 -0.01 2.31 16 34 H 0.07 1.82 8.06 -2.38 -0.02 1.81 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.04 1.02 7.13 -2.38 -0.02 1.00 16 39 H 0.04 1.02 5.20 -2.38 -0.01 1.01 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -71.80 322.91 4.13 -67.67 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.98 Total: 15.07 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.91 Total: 12.86 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -5.59 Total: -113.12 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Total: -71.80 4.13 -67.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338195117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.413 kcal (2) G-P(sol) polarization free energy of solvation -71.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds