Wall clock time and date at job start Mon Mar 30 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00368 * 2 1 4 4 C 1.50698 * 119.99632 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47297 * 95.00049 * 4 2 1 6 6 C 1.50704 * 109.46888 * 179.97438 * 5 4 2 7 7 O 1.21291 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99258 * 179.97438 * 6 5 4 9 9 C 1.40162 * 119.99437 * 180.02562 * 8 6 5 10 10 C 1.40415 * 125.97631 * 0.31570 * 9 8 6 11 11 C 1.35232 * 107.86655 * 180.13084 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.84998 * 11 10 9 13 13 N 1.34968 * 107.86163 * 359.58679 * 11 10 9 14 14 C 1.46509 * 125.97450 * 180.23081 * 13 11 10 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 11 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47105 * 90.00179 * 19 17 15 21 21 H 1.48499 * 109.46684 * 210.00001 * 19 17 15 22 22 H 1.48503 * 109.47226 * 329.99788 * 19 17 15 23 23 N 1.31221 * 125.97269 * 179.97438 * 9 8 6 24 24 H 1.08003 * 120.00451 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99815 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47098 * 270.00209 * 3 2 1 27 27 H 1.09001 * 109.47038 * 29.99963 * 3 2 1 28 28 H 1.08997 * 109.46961 * 149.99603 * 3 2 1 29 29 H 1.09003 * 109.47369 * 335.00186 * 4 2 1 30 30 H 1.09003 * 109.47238 * 215.00251 * 4 2 1 31 31 H 1.08995 * 109.46550 * 60.00023 * 5 4 2 32 32 H 1.08990 * 109.46928 * 299.99983 * 5 4 2 33 33 H 0.96991 * 120.00480 * 0.02562 * 8 6 5 34 34 H 1.07995 * 126.06342 * 0.02562 * 10 9 8 35 35 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 36 36 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 37 37 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 38 38 H 1.08994 * 109.46750 * 210.00045 * 14 13 11 39 39 H 1.09004 * 109.46474 * 329.99737 * 14 13 11 40 40 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4378 6 6 3.1813 -2.9882 -1.4382 7 8 3.4051 -3.5597 -0.3920 8 7 3.6059 -3.5206 -2.6013 9 6 4.3067 -4.7345 -2.6018 10 6 4.6282 -5.5018 -1.4706 11 6 5.3070 -6.5939 -1.8893 12 6 5.8511 -7.6911 -1.0111 13 7 5.4055 -6.5297 -3.2339 14 6 6.0616 -7.5154 -4.0967 15 6 5.0608 -8.5611 -4.5161 16 1 4.0382 -8.4976 -4.1745 17 6 5.4505 -9.5982 -5.3368 18 7 6.6955 -9.6752 -5.7532 19 14 4.2097 -10.8941 -5.8573 20 1 3.5523 -10.4711 -7.1198 21 1 4.9059 -12.1882 -6.0712 22 1 3.1847 -11.0531 -4.7945 23 7 4.7715 -5.3558 -3.6600 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2452 1.6197 -1.0276 27 1 1.4745 2.0647 0.5138 28 1 3.0159 1.1747 0.5139 29 1 1.4384 -2.0857 0.4333 30 1 2.9741 -1.1992 0.5890 31 1 3.0522 -0.9029 -1.8716 32 1 1.5167 -1.7893 -2.0272 33 1 3.4266 -3.0638 -3.4379 34 1 4.3793 -5.2614 -0.4476 35 1 6.8692 -7.4442 -0.7100 36 1 5.8533 -8.6309 -1.5632 37 1 5.2244 -7.7916 -0.1250 38 1 6.4586 -7.0170 -4.9810 39 1 6.8767 -7.9907 -3.5508 40 1 6.9697 -10.4051 -6.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338937154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:03 Heat of formation + Delta-G solvation = 41.498259 kcal Electronic energy + Delta-G solvation = -20577.997432 eV Core-core repulsion = 17394.471341 eV Total energy + Delta-G solvation = -3183.526091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73418 -39.40780 -36.67358 -34.80976 -33.38978 -31.81357 -31.22105 -30.65227 -27.56392 -26.79069 -26.34785 -24.96527 -22.89631 -21.13365 -19.79059 -19.14187 -18.60933 -16.74853 -16.57679 -16.15391 -15.92867 -15.30558 -14.88794 -14.55223 -14.36156 -14.00988 -13.97423 -13.46863 -12.98741 -12.88217 -12.48670 -12.33207 -12.29687 -12.09939 -11.96398 -11.66923 -11.41558 -11.28023 -11.10536 -11.07003 -10.84636 -10.43854 -10.24825 -9.93004 -9.59628 -9.52690 -9.27374 -8.65357 -7.93566 -7.45432 -6.26380 -4.34172 1.92671 2.34347 2.82493 2.92494 3.21119 3.27337 3.32275 3.72566 3.87922 4.29516 4.48872 4.63817 4.76915 4.95373 5.02348 5.07213 5.25658 5.31695 5.38221 5.49669 5.63591 5.66805 5.72231 5.74273 5.93608 5.96197 6.09809 6.25907 6.37140 6.47500 6.56949 6.61011 6.73659 6.93031 7.04607 7.46472 7.65218 7.67189 7.88158 8.05256 8.28153 8.65359 8.74703 9.32298 10.80845 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032964 B = 0.003048 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.215206 B = 9185.378724 C = 9452.777517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.129 4.129 6 C 0.516 3.484 7 O -0.518 6.518 8 N -0.633 5.633 9 C 0.262 3.738 10 C -0.290 4.290 11 C 0.091 3.909 12 C -0.089 4.089 13 N -0.317 5.317 14 C 0.258 3.742 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.066 3.934 18 N -0.892 5.892 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.321 5.321 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.410 0.590 34 H 0.159 0.841 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 16.720 9.717 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.125 4.125 3 C -0.178 4.178 4 C -0.109 4.109 5 C -0.169 4.169 6 C 0.303 3.697 7 O -0.392 6.392 8 N -0.280 5.280 9 C 0.009 3.991 10 C -0.321 4.321 11 C -0.040 4.040 12 C -0.147 4.147 13 N -0.100 5.100 14 C 0.141 3.859 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.196 1.196 23 N -0.152 5.152 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.245 0.755 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.988 16.154 9.020 19.777 hybrid contribution -0.819 -0.512 -0.214 0.990 sum -7.807 15.642 8.806 19.575 Atomic orbital electron populations 1.23734 0.95263 1.01913 1.02409 1.21778 0.95424 0.95687 0.99635 1.20891 1.00292 0.94477 1.02162 1.20449 1.01052 0.94310 0.95078 1.21598 1.01189 0.94394 0.99716 1.20729 0.79225 0.86891 0.82894 1.90648 1.55423 1.61800 1.31300 1.42567 1.54741 1.20465 1.10263 1.19043 0.98282 0.88496 0.93276 1.21249 1.13528 0.97466 0.99879 1.21071 0.99806 0.97640 0.85515 1.20379 1.00419 0.96091 0.97810 1.48997 1.40511 1.15814 1.04646 1.19688 0.92617 0.83993 0.89621 1.21327 0.96575 1.08336 1.31264 0.91754 1.24930 0.95687 0.97889 0.95275 1.69915 1.16170 1.32558 1.34306 0.86355 0.80889 0.80267 0.79179 1.20338 1.20857 1.19641 1.77248 1.19177 0.98520 1.20258 0.88358 0.88559 0.91394 0.91949 0.91679 0.90311 0.90242 0.88525 0.88519 0.75482 0.82367 0.91083 0.89902 0.90625 0.93019 0.92791 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 13.89 29.02 0.40 -1.07 16 2 C -0.13 -0.98 5.31 -101.07 -0.54 -1.52 16 3 C -0.12 -0.78 10.03 36.01 0.36 -0.42 16 4 C -0.07 -0.66 4.67 -27.88 -0.13 -0.79 16 5 C -0.13 -1.16 5.68 -27.88 -0.16 -1.31 16 6 C 0.52 7.17 7.80 -10.98 -0.09 7.09 16 7 O -0.52 -8.94 13.11 5.55 0.07 -8.87 16 8 N -0.63 -9.68 5.45 -11.13 -0.06 -9.74 16 9 C 0.26 5.36 8.11 -154.38 -1.25 4.11 16 10 C -0.29 -6.04 9.52 -39.83 -0.38 -6.42 16 11 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 12 C -0.09 -1.53 9.89 36.01 0.36 -1.18 16 13 N -0.32 -7.60 3.59 -58.32 -0.21 -7.81 16 14 C 0.26 6.66 5.81 -5.19 -0.03 6.63 16 15 C -0.54 -14.83 9.39 -34.44 -0.32 -15.15 16 16 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 19 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 N -0.32 -7.48 12.59 31.44 0.40 -7.08 16 24 H 0.10 0.73 7.99 -52.48 -0.42 0.31 16 25 H 0.10 0.61 8.04 -52.48 -0.42 0.19 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 28 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 30 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.41 4.98 8.82 -40.82 -0.36 4.62 16 34 H 0.16 3.20 5.92 -52.49 -0.31 2.89 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.05 1.37 7.65 -51.93 -0.40 0.98 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -32.22 344.60 -7.39 -39.61 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.06 Total: 3.90 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.44 Total: -6.96 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.86 Total: -48.97 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.87 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.22 -7.39 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338937154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.110 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds