Wall clock time and date at job start Mon Mar 30 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00368 * 2 1 4 4 C 1.50698 * 119.99632 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47297 * 95.00049 * 4 2 1 6 6 C 1.50704 * 109.46888 * 179.97438 * 5 4 2 7 7 O 1.21291 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99258 * 179.97438 * 6 5 4 9 9 C 1.40162 * 119.99437 * 180.02562 * 8 6 5 10 10 C 1.40415 * 125.97631 * 0.31570 * 9 8 6 11 11 C 1.35232 * 107.86655 * 180.13084 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.84998 * 11 10 9 13 13 N 1.34968 * 107.86163 * 359.58679 * 11 10 9 14 14 C 1.46509 * 125.97450 * 180.23081 * 13 11 10 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 11 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47105 * 90.00179 * 19 17 15 21 21 H 1.48499 * 109.46684 * 210.00001 * 19 17 15 22 22 H 1.48503 * 109.47226 * 329.99788 * 19 17 15 23 23 N 1.31221 * 125.97269 * 179.97438 * 9 8 6 24 24 H 1.08003 * 120.00451 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99815 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47098 * 270.00209 * 3 2 1 27 27 H 1.09001 * 109.47038 * 29.99963 * 3 2 1 28 28 H 1.08997 * 109.46961 * 149.99603 * 3 2 1 29 29 H 1.09003 * 109.47369 * 335.00186 * 4 2 1 30 30 H 1.09003 * 109.47238 * 215.00251 * 4 2 1 31 31 H 1.08995 * 109.46550 * 60.00023 * 5 4 2 32 32 H 1.08990 * 109.46928 * 299.99983 * 5 4 2 33 33 H 0.96991 * 120.00480 * 0.02562 * 8 6 5 34 34 H 1.07995 * 126.06342 * 0.02562 * 10 9 8 35 35 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 36 36 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 37 37 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 38 38 H 1.08994 * 109.46750 * 210.00045 * 14 13 11 39 39 H 1.09004 * 109.46474 * 329.99737 * 14 13 11 40 40 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4378 6 6 3.1813 -2.9882 -1.4382 7 8 3.4051 -3.5597 -0.3920 8 7 3.6059 -3.5206 -2.6013 9 6 4.3067 -4.7345 -2.6018 10 6 4.6282 -5.5018 -1.4706 11 6 5.3070 -6.5939 -1.8893 12 6 5.8511 -7.6911 -1.0111 13 7 5.4055 -6.5297 -3.2339 14 6 6.0616 -7.5154 -4.0967 15 6 5.0608 -8.5611 -4.5161 16 1 4.0382 -8.4976 -4.1745 17 6 5.4505 -9.5982 -5.3368 18 7 6.6955 -9.6752 -5.7532 19 14 4.2097 -10.8941 -5.8573 20 1 3.5523 -10.4711 -7.1198 21 1 4.9059 -12.1882 -6.0712 22 1 3.1847 -11.0531 -4.7945 23 7 4.7715 -5.3558 -3.6600 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2452 1.6197 -1.0276 27 1 1.4745 2.0647 0.5138 28 1 3.0159 1.1747 0.5139 29 1 1.4384 -2.0857 0.4333 30 1 2.9741 -1.1992 0.5890 31 1 3.0522 -0.9029 -1.8716 32 1 1.5167 -1.7893 -2.0272 33 1 3.4266 -3.0638 -3.4379 34 1 4.3793 -5.2614 -0.4476 35 1 6.8692 -7.4442 -0.7100 36 1 5.8533 -8.6309 -1.5632 37 1 5.2244 -7.7916 -0.1250 38 1 6.4586 -7.0170 -4.9810 39 1 6.8767 -7.9907 -3.5508 40 1 6.9697 -10.4051 -6.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338937154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:02 Heat of formation + Delta-G solvation = 22.398139 kcal Electronic energy + Delta-G solvation = -20578.825675 eV Core-core repulsion = 17394.471341 eV Total energy + Delta-G solvation = -3184.354334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30408 -40.69268 -37.37520 -36.29032 -35.30141 -33.20282 -32.70507 -31.97498 -28.66563 -28.04693 -27.88965 -26.07712 -24.69818 -22.43130 -21.26823 -20.64332 -19.26602 -18.81341 -17.76626 -17.65021 -17.07663 -16.92670 -16.24948 -15.90768 -15.59993 -15.20368 -14.95499 -14.61055 -14.35359 -14.10183 -13.82083 -13.77369 -13.58723 -13.42324 -13.14663 -12.98688 -12.83733 -12.70117 -12.48387 -12.26348 -12.09395 -11.93093 -11.78175 -11.55245 -11.34233 -10.87624 -10.74595 -9.88338 -9.59278 -9.14684 -8.33959 -6.51902 0.91518 1.25591 1.36729 1.37562 1.42266 1.48467 1.52237 2.21354 2.29644 2.43030 2.95644 3.54307 3.87458 4.01613 4.04164 4.15270 4.26870 4.37902 4.47312 4.66259 4.73882 4.74878 4.80851 4.86108 4.91917 4.98388 5.00082 5.01316 5.11840 5.14577 5.20430 5.23398 5.27660 5.52393 5.79694 5.79916 5.94761 6.03162 6.24884 6.29625 6.60772 6.99544 7.15204 7.19227 8.72033 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032964 B = 0.003048 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.215206 B = 9185.378724 C = 9452.777517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.122 4.122 4 C -0.069 4.069 5 C -0.115 4.115 6 C 0.516 3.484 7 O -0.552 6.552 8 N -0.626 5.626 9 C 0.270 3.730 10 C -0.300 4.300 11 C 0.086 3.914 12 C -0.086 4.086 13 N -0.344 5.344 14 C 0.276 3.724 15 C -0.554 4.554 16 H 0.049 0.951 17 C 0.023 3.977 18 N -0.918 5.918 19 Si 0.971 3.029 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.270 1.270 23 N -0.359 5.359 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.426 0.574 34 H 0.166 0.834 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.024 0.976 39 H 0.052 0.948 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 17.682 10.143 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.131 4.131 3 C -0.178 4.178 4 C -0.107 4.107 5 C -0.155 4.155 6 C 0.305 3.695 7 O -0.428 6.428 8 N -0.276 5.276 9 C 0.016 3.984 10 C -0.331 4.331 11 C -0.044 4.044 12 C -0.144 4.144 13 N -0.126 5.126 14 C 0.157 3.843 15 C -0.592 4.592 16 H 0.067 0.933 17 C -0.178 4.178 18 N -0.556 5.556 19 Si 0.795 3.205 20 H -0.200 1.200 21 H -0.194 1.194 22 H -0.194 1.194 23 N -0.190 5.190 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.263 0.737 34 H 0.183 0.817 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.297 17.152 9.449 21.267 hybrid contribution -0.446 -0.705 -0.256 0.873 sum -8.742 16.446 9.192 20.770 Atomic orbital electron populations 1.23870 0.95247 1.02476 1.01666 1.21765 0.95534 0.95465 1.00325 1.20917 1.00137 0.93830 1.02940 1.20399 1.00546 0.94834 0.94956 1.21656 1.01777 0.91846 1.00195 1.21724 0.78264 0.87812 0.81690 1.90625 1.56631 1.63033 1.32467 1.42782 1.54120 1.18864 1.11856 1.19435 0.96934 0.89573 0.92464 1.21438 1.13789 0.97598 1.00274 1.21761 0.99114 0.98635 0.84884 1.20502 1.02146 0.93960 0.97766 1.48798 1.42146 1.16324 1.05361 1.19242 0.92345 0.83822 0.88922 1.21433 0.96164 1.09481 1.32134 0.93308 1.25736 0.97523 0.99668 0.94881 1.69995 1.17671 1.33363 1.34547 0.85354 0.78544 0.77944 0.78644 1.19954 1.19446 1.19443 1.77168 1.20952 0.99096 1.21757 0.88622 0.87269 0.90356 0.91212 0.91836 0.91807 0.91250 0.85677 0.86214 0.73650 0.81658 0.88857 0.91425 0.87982 0.95752 0.93053 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 13.89 67.78 0.94 -1.55 16 2 C -0.13 -1.77 5.31 -16.49 -0.09 -1.85 16 3 C -0.12 -1.26 10.03 71.24 0.71 -0.55 16 4 C -0.07 -1.17 4.67 29.85 0.14 -1.04 16 5 C -0.12 -1.77 5.68 29.85 0.17 -1.60 16 6 C 0.52 13.58 7.80 87.66 0.68 14.27 16 7 O -0.55 -18.67 13.11 -3.06 -0.04 -18.71 16 8 N -0.63 -18.46 5.45 -307.50 -1.68 -20.14 16 9 C 0.27 11.05 8.11 133.32 1.08 12.13 16 10 C -0.30 -12.45 9.52 22.11 0.21 -12.24 16 11 C 0.09 3.71 6.92 41.38 0.29 3.99 16 12 C -0.09 -2.91 9.89 71.24 0.70 -2.21 16 13 N -0.34 -16.90 3.59 -338.43 -1.22 -18.11 16 14 C 0.28 14.73 5.81 85.63 0.50 15.23 16 15 C -0.55 -31.31 9.39 25.60 0.24 -31.07 16 16 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 17 C 0.02 1.26 5.46 84.66 0.46 1.73 16 18 N -0.92 -51.99 13.29 21.45 0.28 -51.71 16 19 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 N -0.36 -17.05 12.59 -54.44 -0.69 -17.73 16 24 H 0.10 1.25 7.99 -2.91 -0.02 1.23 16 25 H 0.11 1.11 8.04 -2.91 -0.02 1.08 16 26 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.63 8.06 -2.39 -0.02 0.61 16 28 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 29 H 0.06 1.26 7.94 -2.39 -0.02 1.24 16 30 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 31 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.43 9.66 8.82 -92.71 -0.82 8.84 16 34 H 0.17 6.61 5.92 -2.91 -0.02 6.59 16 35 H 0.09 2.73 8.14 -2.39 -0.02 2.72 16 36 H 0.07 2.51 7.71 -2.39 -0.02 2.49 16 37 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 2.72 7.65 -2.39 -0.02 2.70 16 40 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.45 344.60 4.95 -65.49 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.22 Total: 20.45 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 6.04 Total: -4.77 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.29 Total: -107.69 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.04 Total: -18.71 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.45 4.95 -65.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338937154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.892 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds