Wall clock time and date at job start Mon Mar 30 2020 01:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38673 * 120.42141 * 2 1 4 4 C 1.38632 * 118.42169 * 180.24162 * 3 2 1 5 5 C 1.38227 * 119.15828 * 359.75200 * 4 3 2 6 6 N 1.31855 * 120.76690 * 0.02562 * 5 4 3 7 7 C 1.31885 * 121.72438 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.61683 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47247 * 165.00324 * 8 7 6 10 10 C 1.53006 * 109.46866 * 285.00155 * 8 7 6 11 11 N 1.46500 * 109.46939 * 45.00042 * 8 7 6 12 12 C 1.34781 * 119.99732 * 155.00269 * 11 8 7 13 13 O 1.21587 * 119.99810 * 359.97438 * 12 11 8 14 14 N 1.34776 * 119.99746 * 180.02562 * 12 11 8 15 15 C 1.46502 * 119.99458 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46843 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47195 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00257 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00258 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00438 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99595 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47350 * 90.00025 * 21 19 17 23 23 H 1.48504 * 109.46881 * 209.99879 * 21 19 17 24 24 H 1.48499 * 109.47123 * 329.99463 * 21 19 17 25 25 H 1.09004 * 109.47518 * 270.25283 * 1 2 3 26 26 H 1.09001 * 109.46931 * 30.24840 * 1 2 3 27 27 H 1.08995 * 109.47278 * 150.25012 * 1 2 3 28 28 H 1.07998 * 120.79088 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.41786 * 179.73456 * 4 3 2 30 30 H 1.08003 * 119.61284 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 32 32 H 1.08993 * 109.46955 * 300.00219 * 10 8 7 33 33 H 1.09000 * 109.47050 * 60.00048 * 10 8 7 34 34 H 0.96998 * 120.00364 * 334.99781 * 11 8 7 35 35 H 0.96998 * 120.00350 * 359.97438 * 14 12 11 36 36 H 1.08999 * 109.47215 * 299.99256 * 15 14 12 37 37 H 1.09001 * 109.47148 * 59.99849 * 15 14 12 38 38 H 1.09000 * 109.47515 * 300.00115 * 16 15 14 39 39 H 1.09001 * 109.47132 * 60.00132 * 16 15 14 40 40 H 0.96998 * 120.00643 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2255 -0.0824 -0.0048 6 7 3.5254 -1.1997 -0.0002 7 6 2.2065 -1.1917 0.0047 8 6 1.4538 -2.4972 0.0092 9 1 0.4134 -2.3158 0.2789 10 6 1.5173 -3.1273 -1.3836 11 7 2.0597 -3.4068 0.9848 12 6 1.3224 -4.3903 1.5376 13 8 0.1543 -4.5224 1.2269 14 7 1.8796 -5.2268 2.4355 15 6 1.0780 -6.2956 3.0367 16 6 1.9435 -7.0943 4.0135 17 6 1.1188 -8.1933 4.6324 18 1 0.0813 -8.3106 4.3564 19 6 1.6890 -9.0496 5.5503 20 7 0.9692 -10.0084 6.0908 21 14 3.4837 -8.8470 6.0271 22 1 3.5864 -7.9301 7.1907 23 1 4.0523 -10.1705 6.3882 24 1 4.2393 -8.2797 4.8815 25 1 -0.3634 0.0045 1.0277 26 1 -0.3633 0.8878 -0.5177 27 1 -0.3633 -0.8922 -0.5099 28 1 1.6890 2.1423 -0.0004 29 1 4.1735 2.0591 -0.0096 30 1 5.3046 -0.1287 -0.0084 31 1 0.9733 -4.0718 -1.3802 32 1 1.0666 -2.4505 -2.1094 33 1 2.5578 -3.3087 -1.6532 34 1 2.9915 -3.3012 1.2329 35 1 2.8114 -5.1212 2.6837 36 1 0.2340 -5.8598 3.5713 37 1 0.7093 -6.9577 2.2533 38 1 2.7873 -7.5300 3.4786 39 1 2.3125 -6.4323 4.7969 40 1 1.3703 -10.6106 6.7368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357776368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:15 Heat of formation + Delta-G solvation = -7.685685 kcal Electronic energy + Delta-G solvation = -20763.250452 eV Core-core repulsion = 17577.591586 eV Total energy + Delta-G solvation = -3185.658867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90580 -39.46675 -35.97004 -34.66733 -34.00661 -32.82990 -32.10573 -30.40674 -29.23973 -27.60333 -25.11610 -24.42857 -22.63079 -21.53694 -20.69069 -20.34787 -18.33559 -17.12383 -16.79716 -16.74635 -15.68003 -15.23116 -15.00278 -14.73685 -14.24468 -14.09757 -13.95401 -13.53046 -13.47026 -13.40109 -13.04894 -12.87356 -12.56791 -12.55515 -12.30188 -11.96746 -11.43403 -11.18879 -11.07196 -10.34036 -10.21690 -10.08947 -9.93602 -9.81820 -9.69059 -9.28543 -9.18266 -8.96352 -8.59048 -8.31920 -6.07528 -4.07215 0.71943 0.92866 3.00835 3.28311 3.35912 3.37714 3.44865 3.59175 3.90391 4.31661 4.41258 4.45751 4.57265 4.64963 4.72385 5.04044 5.12210 5.19080 5.23622 5.25610 5.31088 5.35999 5.58925 5.68978 5.77876 5.86126 5.90177 6.13112 6.15226 6.30485 6.37585 6.61524 6.66808 6.88852 7.13088 7.30102 7.38847 7.65653 7.71750 8.37912 8.50642 8.96310 8.99159 9.52876 11.05582 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028409 B = 0.003179 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.362459 B = 8806.119130 C = 9310.497586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.171 4.171 5 C 0.095 3.905 6 N -0.473 5.473 7 C 0.122 3.878 8 C 0.212 3.788 9 H 0.106 0.894 10 C -0.158 4.158 11 N -0.741 5.741 12 C 0.701 3.299 13 O -0.597 6.597 14 N -0.742 5.742 15 C 0.149 3.851 16 C -0.022 4.022 17 C -0.521 4.521 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.900 5.900 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.400 0.600 35 H 0.392 0.608 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 24.749 -14.374 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.191 4.191 5 C -0.063 4.063 6 N -0.181 5.181 7 C -0.017 4.017 8 C 0.106 3.894 9 H 0.124 0.876 10 C -0.217 4.217 11 N -0.398 5.398 12 C 0.401 3.599 13 O -0.476 6.476 14 N -0.395 5.395 15 C 0.026 3.974 16 C -0.060 4.060 17 C -0.559 4.559 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.538 5.538 21 Si 0.709 3.291 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.338 23.625 -14.510 28.235 hybrid contribution 1.565 1.036 0.609 1.973 sum 6.903 24.661 -13.901 29.138 Atomic orbital electron populations 1.20883 0.89923 1.03545 1.03332 1.20715 0.97812 0.93290 1.00650 1.21491 0.94194 0.98011 0.96540 1.22155 0.95280 0.99706 1.01927 1.22744 1.00325 0.87558 0.95635 1.67371 1.07496 1.31699 1.11543 1.21228 0.89955 0.94495 0.96000 1.19607 0.96574 0.83707 0.89558 0.87644 1.22168 1.02869 1.01718 0.94969 1.45097 1.14766 1.33261 1.46677 1.16016 0.84937 0.79528 0.79467 1.90887 1.15402 1.74803 1.66464 1.45512 1.15058 1.33867 1.45099 1.21364 0.93883 0.86377 0.95749 1.19799 0.96316 0.95647 0.94229 1.20928 0.98985 1.12148 1.23879 0.90575 1.24997 0.97898 0.94812 0.95600 1.69902 1.36518 1.18047 1.29334 0.86750 0.85625 0.77503 0.79183 1.20272 1.21313 1.19061 0.90323 0.91028 0.90375 0.84700 0.84751 0.82614 0.90923 0.92033 0.91892 0.76526 0.77557 0.92202 0.92136 0.96007 0.96498 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.25 36.00 0.33 -0.55 16 2 C -0.12 -1.11 5.90 -104.48 -0.62 -1.72 16 3 C -0.08 -0.56 9.86 -39.28 -0.39 -0.95 16 4 C -0.17 -1.18 10.11 -39.44 -0.40 -1.58 16 5 C 0.09 0.79 11.18 -17.55 -0.20 0.59 16 6 N -0.47 -5.10 9.57 -9.47 -0.09 -5.19 16 7 C 0.12 1.32 5.71 -82.59 -0.47 0.85 16 8 C 0.21 2.60 2.44 -69.08 -0.17 2.43 16 9 H 0.11 1.36 5.36 -51.93 -0.28 1.08 16 10 C -0.16 -1.82 9.47 37.16 0.35 -1.46 16 11 N -0.74 -10.26 5.06 -59.81 -0.30 -10.56 16 12 C 0.70 12.35 8.53 -86.91 -0.74 11.61 16 13 O -0.60 -12.58 16.01 5.29 0.08 -12.50 16 14 N -0.74 -13.04 5.56 -65.22 -0.36 -13.40 16 15 C 0.15 3.16 5.61 -4.04 -0.02 3.14 16 16 C -0.02 -0.52 4.16 -27.88 -0.12 -0.63 16 17 C -0.52 -14.82 9.66 -34.44 -0.33 -15.16 16 18 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 21 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 27 H 0.08 0.60 6.41 -51.93 -0.33 0.27 16 28 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 30 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 4.98 8.06 -40.82 -0.33 4.65 16 35 H 0.39 5.86 8.49 -40.82 -0.35 5.52 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -33.92 336.23 -8.23 -42.15 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.86 Total: 6.19 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.86 Total: -1.54 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.02 Total: -56.06 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.92 -8.23 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357776368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.465 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds