Wall clock time and date at job start Mon Mar 30 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38673 * 120.42141 * 2 1 4 4 C 1.38632 * 118.42169 * 180.24162 * 3 2 1 5 5 C 1.38227 * 119.15828 * 359.75200 * 4 3 2 6 6 N 1.31855 * 120.76690 * 0.02562 * 5 4 3 7 7 C 1.31885 * 121.72438 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.61683 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47247 * 165.00324 * 8 7 6 10 10 C 1.53006 * 109.46866 * 285.00155 * 8 7 6 11 11 N 1.46500 * 109.46939 * 45.00042 * 8 7 6 12 12 C 1.34781 * 119.99732 * 155.00269 * 11 8 7 13 13 O 1.21587 * 119.99810 * 359.97438 * 12 11 8 14 14 N 1.34776 * 119.99746 * 180.02562 * 12 11 8 15 15 C 1.46502 * 119.99458 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46843 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47195 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00257 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00258 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00438 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99595 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47350 * 90.00025 * 21 19 17 23 23 H 1.48504 * 109.46881 * 209.99879 * 21 19 17 24 24 H 1.48499 * 109.47123 * 329.99463 * 21 19 17 25 25 H 1.09004 * 109.47518 * 270.25283 * 1 2 3 26 26 H 1.09001 * 109.46931 * 30.24840 * 1 2 3 27 27 H 1.08995 * 109.47278 * 150.25012 * 1 2 3 28 28 H 1.07998 * 120.79088 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.41786 * 179.73456 * 4 3 2 30 30 H 1.08003 * 119.61284 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 32 32 H 1.08993 * 109.46955 * 300.00219 * 10 8 7 33 33 H 1.09000 * 109.47050 * 60.00048 * 10 8 7 34 34 H 0.96998 * 120.00364 * 334.99781 * 11 8 7 35 35 H 0.96998 * 120.00350 * 359.97438 * 14 12 11 36 36 H 1.08999 * 109.47215 * 299.99256 * 15 14 12 37 37 H 1.09001 * 109.47148 * 59.99849 * 15 14 12 38 38 H 1.09000 * 109.47515 * 300.00115 * 16 15 14 39 39 H 1.09001 * 109.47132 * 60.00132 * 16 15 14 40 40 H 0.96998 * 120.00643 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2255 -0.0824 -0.0048 6 7 3.5254 -1.1997 -0.0002 7 6 2.2065 -1.1917 0.0047 8 6 1.4538 -2.4972 0.0092 9 1 0.4134 -2.3158 0.2789 10 6 1.5173 -3.1273 -1.3836 11 7 2.0597 -3.4068 0.9848 12 6 1.3224 -4.3903 1.5376 13 8 0.1543 -4.5224 1.2269 14 7 1.8796 -5.2268 2.4355 15 6 1.0780 -6.2956 3.0367 16 6 1.9435 -7.0943 4.0135 17 6 1.1188 -8.1933 4.6324 18 1 0.0813 -8.3106 4.3564 19 6 1.6890 -9.0496 5.5503 20 7 0.9692 -10.0084 6.0908 21 14 3.4837 -8.8470 6.0271 22 1 3.5864 -7.9301 7.1907 23 1 4.0523 -10.1705 6.3882 24 1 4.2393 -8.2797 4.8815 25 1 -0.3634 0.0045 1.0277 26 1 -0.3633 0.8878 -0.5177 27 1 -0.3633 -0.8922 -0.5099 28 1 1.6890 2.1423 -0.0004 29 1 4.1735 2.0591 -0.0096 30 1 5.3046 -0.1287 -0.0084 31 1 0.9733 -4.0718 -1.3802 32 1 1.0666 -2.4505 -2.1094 33 1 2.5578 -3.3087 -1.6532 34 1 2.9915 -3.3012 1.2329 35 1 2.8114 -5.1212 2.6837 36 1 0.2340 -5.8598 3.5713 37 1 0.7093 -6.9577 2.2533 38 1 2.7873 -7.5300 3.4786 39 1 2.3125 -6.4323 4.7969 40 1 1.3703 -10.6106 6.7368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357776368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:14 Heat of formation + Delta-G solvation = -32.160903 kcal Electronic energy + Delta-G solvation = -20764.311778 eV Core-core repulsion = 17577.591586 eV Total energy + Delta-G solvation = -3186.720192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68789 -40.74330 -37.18755 -36.23423 -34.83209 -34.61761 -33.19063 -31.84936 -30.50554 -28.20227 -26.79343 -25.44756 -23.41071 -22.72412 -22.28980 -21.58119 -19.65822 -18.91444 -17.97136 -17.53652 -16.67379 -16.60812 -16.27969 -15.86810 -15.56866 -15.41804 -15.16553 -14.93620 -14.65032 -14.48079 -14.01429 -13.82271 -13.53770 -13.37340 -13.33393 -13.12869 -13.03510 -12.77733 -12.16819 -12.15831 -11.89037 -11.75908 -11.53286 -11.28970 -10.78218 -10.67060 -10.52466 -10.29916 -9.83619 -9.69555 -8.29368 -6.36377 0.08440 0.34143 1.39359 1.41950 1.53374 1.74107 2.15288 2.37419 2.80572 3.05604 3.15930 3.35785 3.68523 3.94703 3.99258 4.13634 4.23923 4.31693 4.35984 4.46626 4.53581 4.58410 4.71714 4.73225 4.76993 4.82157 4.87356 5.12680 5.15778 5.20124 5.24432 5.32722 5.42205 5.45201 5.52383 5.67463 5.79014 6.02594 6.24189 6.70813 7.00323 7.11922 7.27979 7.58936 8.87473 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028409 B = 0.003179 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.362459 B = 8806.119130 C = 9310.497586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.131 4.131 3 C -0.078 4.078 4 C -0.161 4.161 5 C 0.081 3.919 6 N -0.496 5.496 7 C 0.099 3.901 8 C 0.209 3.791 9 H 0.095 0.905 10 C -0.150 4.150 11 N -0.724 5.724 12 C 0.700 3.300 13 O -0.635 6.635 14 N -0.733 5.733 15 C 0.165 3.835 16 C -0.012 4.012 17 C -0.538 4.538 18 H 0.030 0.970 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.959 3.041 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.239 1.239 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.178 0.822 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.409 0.591 35 H 0.408 0.592 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 27.714 -14.847 32.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.181 4.181 5 C -0.076 4.076 6 N -0.205 5.205 7 C -0.038 4.038 8 C 0.104 3.896 9 H 0.113 0.887 10 C -0.209 4.209 11 N -0.380 5.380 12 C 0.400 3.600 13 O -0.517 6.517 14 N -0.388 5.388 15 C 0.041 3.959 16 C -0.049 4.049 17 C -0.577 4.577 18 H 0.049 0.951 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.781 3.219 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.162 1.162 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.181 0.819 29 H 0.184 0.816 30 H 0.195 0.805 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.245 0.755 35 H 0.244 0.756 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.247 26.637 -15.012 31.669 hybrid contribution 0.606 0.192 0.704 0.949 sum 8.853 26.829 -14.308 31.668 Atomic orbital electron populations 1.20902 0.89286 1.04218 1.03246 1.20905 0.98476 0.93416 1.00530 1.21876 0.94642 0.98411 0.95486 1.22537 0.95388 1.00394 0.99735 1.23223 1.01413 0.87572 0.95400 1.67290 1.07513 1.33272 1.12419 1.20971 0.90325 0.94037 0.98510 1.19683 0.96379 0.84455 0.89129 0.88721 1.22076 1.02571 1.01001 0.95262 1.44991 1.14849 1.32099 1.46093 1.16112 0.84609 0.79973 0.79341 1.90863 1.17275 1.75865 1.67652 1.45152 1.15503 1.33079 1.45082 1.20884 0.93486 0.86758 0.94766 1.19643 0.95983 0.94513 0.94809 1.21248 0.97843 1.14076 1.24496 0.95142 1.26062 1.03737 0.94107 0.95335 1.70069 1.39231 1.19388 1.30374 0.85541 0.78615 0.77834 0.79896 1.18991 1.21163 1.16181 0.90767 0.88773 0.91304 0.81941 0.81578 0.80457 0.93174 0.90106 0.91920 0.75454 0.75636 0.93925 0.93946 0.94591 0.94746 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.25 71.23 0.66 -0.97 16 2 C -0.13 -2.14 5.90 -19.78 -0.12 -2.25 16 3 C -0.08 -0.90 9.86 22.47 0.22 -0.68 16 4 C -0.16 -1.65 10.11 22.36 0.23 -1.42 16 5 C 0.08 1.14 11.18 84.69 0.95 2.08 16 6 N -0.50 -9.88 9.57 -183.88 -1.76 -11.64 16 7 C 0.10 2.04 5.71 42.54 0.24 2.29 16 8 C 0.21 5.10 2.44 44.25 0.11 5.20 16 9 H 0.09 2.51 5.36 -2.39 -0.01 2.49 16 10 C -0.15 -3.45 9.47 71.98 0.68 -2.76 16 11 N -0.72 -19.71 5.06 -461.40 -2.34 -22.05 16 12 C 0.70 24.72 8.53 179.05 1.53 26.24 16 13 O -0.63 -27.50 16.01 -3.99 -0.06 -27.57 16 14 N -0.73 -25.24 5.56 -478.52 -2.66 -27.90 16 15 C 0.17 7.10 5.61 86.38 0.48 7.58 16 16 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 17 C -0.54 -31.33 9.66 25.60 0.25 -31.08 16 18 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 19 C 0.00 0.27 5.47 84.66 0.46 0.73 16 20 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 21 Si 0.96 43.10 27.47 68.60 1.88 44.98 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 25 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.09 0.81 8.10 -2.39 -0.02 0.79 16 27 H 0.07 1.05 6.41 -2.39 -0.02 1.04 16 28 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 29 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 30 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.41 9.71 8.06 -92.71 -0.75 8.96 16 35 H 0.41 11.37 8.49 -92.71 -0.79 10.58 16 36 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.04 1.56 7.20 -2.39 -0.02 1.55 16 39 H 0.03 1.47 7.57 -2.39 -0.02 1.46 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -75.77 336.23 0.65 -75.12 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.53 Total: 24.16 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 5.82 Total: 4.55 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -6.46 Total: -121.25 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.06 Total: -27.57 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.98 kcal Total: -75.77 0.65 -75.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357776368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.964 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds