Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38664 * 120.42143 * 2 1 4 4 C 1.38627 * 118.42455 * 179.97438 * 3 2 1 5 5 C 1.38218 * 119.15994 * 0.02562 * 4 3 2 6 6 N 1.31853 * 120.76594 * 359.72577 * 5 4 3 7 7 C 1.31882 * 121.72475 * 0.56290 * 6 5 4 8 8 C 1.50698 * 119.62234 * 179.71282 * 7 6 5 9 9 H 1.08999 * 109.47497 * 194.62846 * 8 7 6 10 10 C 1.52992 * 109.47438 * 74.62490 * 8 7 6 11 11 N 1.46506 * 109.46754 * 314.62548 * 8 7 6 12 12 C 1.34772 * 119.99877 * 204.99802 * 11 8 7 13 13 O 1.21586 * 120.00239 * 0.02562 * 12 11 8 14 14 N 1.34780 * 119.99975 * 180.02562 * 12 11 8 15 15 C 1.46497 * 120.00270 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47541 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.47287 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00191 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00052 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99866 * 359.97438 * 19 17 16 21 21 Si 1.86788 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47392 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47282 * 119.99977 * 21 19 17 24 24 H 1.48508 * 109.47232 * 239.99698 * 21 19 17 25 25 H 1.09003 * 109.46774 * 264.15065 * 1 2 3 26 26 H 1.08998 * 109.47227 * 24.15179 * 1 2 3 27 27 H 1.09007 * 109.47154 * 144.15324 * 1 2 3 28 28 H 1.08005 * 120.78575 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.42064 * 180.02562 * 4 3 2 30 30 H 1.08008 * 119.61787 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.47424 * 300.00368 * 10 8 7 32 32 H 1.09002 * 109.46840 * 60.00264 * 10 8 7 33 33 H 1.08995 * 109.47719 * 180.02562 * 10 8 7 34 34 H 0.97005 * 119.99896 * 24.99998 * 11 8 7 35 35 H 0.97002 * 120.00090 * 359.72329 * 14 12 11 36 36 H 1.09006 * 109.47033 * 300.00255 * 15 14 12 37 37 H 1.09000 * 109.47196 * 59.99635 * 15 14 12 38 38 H 1.08997 * 109.46836 * 299.99914 * 16 15 14 39 39 H 1.09000 * 109.47045 * 59.99700 * 16 15 14 40 40 H 0.96997 * 120.00325 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1957 0.0000 4 6 3.5945 1.1474 0.0005 5 6 4.2255 -0.0823 0.0005 6 7 3.5254 -1.1996 0.0054 7 6 2.2067 -1.1917 -0.0005 8 6 1.4539 -2.4972 -0.0011 9 1 0.4122 -2.3159 -0.2657 10 6 1.5242 -3.1271 1.3914 11 7 2.0551 -3.4070 -0.9795 12 6 1.3151 -4.3907 -1.5284 13 8 0.1486 -4.5227 -1.2120 14 7 1.8683 -5.2280 -2.4282 15 6 1.0639 -6.2968 -3.0253 16 6 1.9245 -7.0957 -4.0061 17 6 1.0969 -8.1948 -4.6208 18 1 0.0607 -8.3122 -4.3398 19 6 1.6627 -9.0513 -5.5414 20 7 2.9246 -8.9087 -5.8833 21 14 0.6370 -10.4141 -6.3027 22 1 -0.7420 -10.3612 -5.7543 23 1 0.5913 -10.2351 -7.7762 24 1 1.2463 -11.7301 -5.9827 25 1 -0.3633 -0.1047 1.0224 26 1 -0.3633 0.9377 -0.4205 27 1 -0.3634 -0.8331 -0.6019 28 1 1.6889 2.1423 0.0004 29 1 4.1735 2.0591 0.0010 30 1 5.3046 -0.1286 0.0014 31 1 2.5660 -3.3084 1.6561 32 1 1.0769 -2.4502 2.1193 33 1 0.9802 -4.0716 1.3909 34 1 2.9856 -3.3014 -1.2322 35 1 2.7978 -5.1201 -2.6836 36 1 0.6982 -6.9584 -2.2399 37 1 0.2176 -5.8612 -3.5565 38 1 2.2897 -6.4339 -4.7914 39 1 2.7710 -7.5313 -3.4753 40 1 3.3228 -9.5115 -6.5306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357776369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = -11.429608 kcal Electronic energy + Delta-G solvation = -20705.683854 eV Core-core repulsion = 17519.862639 eV Total energy + Delta-G solvation = -3185.821215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85645 -39.38221 -35.88067 -34.55244 -33.96417 -32.84956 -32.04576 -30.18821 -28.88295 -27.55321 -25.00990 -24.38628 -22.61387 -21.58655 -20.78234 -20.28028 -18.29113 -17.01786 -16.76122 -16.27527 -15.61743 -15.16202 -14.92802 -14.71808 -14.48696 -13.99985 -13.91233 -13.41476 -13.36487 -13.25504 -13.02066 -12.86548 -12.48761 -12.26766 -12.21755 -11.91205 -11.13226 -11.04282 -10.98028 -10.58144 -10.27457 -10.04629 -9.87300 -9.74625 -9.50885 -9.21306 -9.11916 -8.91432 -8.44524 -8.17883 -6.05486 -4.07829 0.76742 0.97211 3.09269 3.31134 3.38625 3.44131 3.50655 3.66603 3.95573 4.35526 4.43522 4.49369 4.63086 4.70034 4.81403 5.06845 5.16560 5.24338 5.28473 5.31633 5.35171 5.38426 5.62264 5.73991 5.81872 5.91293 5.96353 6.17876 6.36804 6.42384 6.45924 6.70729 6.83831 7.08059 7.36082 7.63211 7.68890 7.70692 7.94317 8.31049 8.52794 8.97713 9.07718 9.56691 11.06291 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033244 B = 0.002918 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.045410 B = 9591.763921 C = 9933.106278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 C -0.076 4.076 4 C -0.171 4.171 5 C 0.095 3.905 6 N -0.472 5.472 7 C 0.122 3.878 8 C 0.211 3.789 9 H 0.106 0.894 10 C -0.157 4.157 11 N -0.742 5.742 12 C 0.700 3.300 13 O -0.601 6.601 14 N -0.738 5.738 15 C 0.141 3.859 16 C 0.012 3.988 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.400 0.600 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 21.987 13.690 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.191 4.191 5 C -0.062 4.062 6 N -0.180 5.180 7 C -0.016 4.016 8 C 0.105 3.895 9 H 0.124 0.876 10 C -0.216 4.216 11 N -0.399 5.399 12 C 0.400 3.600 13 O -0.480 6.480 14 N -0.392 5.392 15 C 0.018 3.982 16 C -0.025 4.025 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.965 20.942 13.853 25.128 hybrid contribution 0.227 0.295 -0.721 0.811 sum 1.192 21.236 13.132 24.997 Atomic orbital electron populations 1.20896 0.89973 1.03657 1.03136 1.20706 0.97789 0.93309 1.00762 1.21490 0.94198 0.97965 0.96569 1.22149 0.95273 0.99705 1.01978 1.22751 1.00346 0.87550 0.95572 1.67377 1.07490 1.31686 1.11478 1.21227 0.89960 0.94506 0.95950 1.19627 0.96627 0.83718 0.89533 0.87648 1.22148 1.02832 1.01648 0.94958 1.45116 1.14937 1.33288 1.46542 1.16048 0.84895 0.79532 0.79553 1.90868 1.15615 1.74970 1.66565 1.45526 1.15400 1.33572 1.44654 1.21577 0.94202 0.86460 0.95954 1.19331 0.95334 0.94579 0.93296 1.21099 0.97472 1.13440 1.23759 0.92164 1.25002 0.95021 0.97804 0.96553 1.69968 1.11939 1.38256 1.33200 0.86460 0.80506 0.81670 0.78940 1.19568 1.20980 1.20970 0.90441 0.91138 0.90167 0.84737 0.84767 0.82595 0.91904 0.92113 0.90978 0.76495 0.77367 0.92774 0.92853 0.95999 0.95945 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.40 36.00 0.34 -0.58 16 2 C -0.12 -1.16 5.90 -104.48 -0.62 -1.78 16 3 C -0.08 -0.59 9.84 -39.28 -0.39 -0.97 16 4 C -0.17 -1.25 10.11 -39.45 -0.40 -1.65 16 5 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 6 N -0.47 -5.33 9.58 -9.47 -0.09 -5.42 16 7 C 0.12 1.38 5.71 -82.59 -0.47 0.91 16 8 C 0.21 2.69 2.66 -69.08 -0.18 2.51 16 9 H 0.11 1.40 5.03 -51.93 -0.26 1.14 16 10 C -0.16 -1.87 9.47 37.15 0.35 -1.52 16 11 N -0.74 -10.79 5.06 -59.81 -0.30 -11.10 16 12 C 0.70 12.87 8.53 -86.92 -0.74 12.13 16 13 O -0.60 -12.99 16.01 5.29 0.08 -12.91 16 14 N -0.74 -13.80 5.56 -65.23 -0.36 -14.16 16 15 C 0.14 3.12 5.61 -4.04 -0.02 3.10 16 16 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 17 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 18 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 27 H 0.08 0.72 6.22 -51.93 -0.32 0.40 16 28 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 29 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 5.32 8.07 -40.82 -0.33 4.99 16 35 H 0.39 6.49 8.49 -40.82 -0.35 6.15 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -33.25 339.64 -8.59 -41.83 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.87 Total: 6.23 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.88 Total: -0.46 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.02 Total: -56.44 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.25 -8.59 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357776369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.405 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds