Wall clock time and date at job start Mon Mar 30 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38664 * 120.42143 * 2 1 4 4 C 1.38627 * 118.42455 * 179.97438 * 3 2 1 5 5 C 1.38218 * 119.15994 * 0.02562 * 4 3 2 6 6 N 1.31853 * 120.76594 * 359.72577 * 5 4 3 7 7 C 1.31882 * 121.72475 * 0.56290 * 6 5 4 8 8 C 1.50698 * 119.62234 * 179.71282 * 7 6 5 9 9 H 1.08999 * 109.47497 * 194.62846 * 8 7 6 10 10 C 1.52992 * 109.47438 * 74.62490 * 8 7 6 11 11 N 1.46506 * 109.46754 * 314.62548 * 8 7 6 12 12 C 1.34772 * 119.99877 * 204.99802 * 11 8 7 13 13 O 1.21586 * 120.00239 * 0.02562 * 12 11 8 14 14 N 1.34780 * 119.99975 * 180.02562 * 12 11 8 15 15 C 1.46497 * 120.00270 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47541 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.47287 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00191 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00052 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99866 * 359.97438 * 19 17 16 21 21 Si 1.86788 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47392 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47282 * 119.99977 * 21 19 17 24 24 H 1.48508 * 109.47232 * 239.99698 * 21 19 17 25 25 H 1.09003 * 109.46774 * 264.15065 * 1 2 3 26 26 H 1.08998 * 109.47227 * 24.15179 * 1 2 3 27 27 H 1.09007 * 109.47154 * 144.15324 * 1 2 3 28 28 H 1.08005 * 120.78575 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.42064 * 180.02562 * 4 3 2 30 30 H 1.08008 * 119.61787 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.47424 * 300.00368 * 10 8 7 32 32 H 1.09002 * 109.46840 * 60.00264 * 10 8 7 33 33 H 1.08995 * 109.47719 * 180.02562 * 10 8 7 34 34 H 0.97005 * 119.99896 * 24.99998 * 11 8 7 35 35 H 0.97002 * 120.00090 * 359.72329 * 14 12 11 36 36 H 1.09006 * 109.47033 * 300.00255 * 15 14 12 37 37 H 1.09000 * 109.47196 * 59.99635 * 15 14 12 38 38 H 1.08997 * 109.46836 * 299.99914 * 16 15 14 39 39 H 1.09000 * 109.47045 * 59.99700 * 16 15 14 40 40 H 0.96997 * 120.00325 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1957 0.0000 4 6 3.5945 1.1474 0.0005 5 6 4.2255 -0.0823 0.0005 6 7 3.5254 -1.1996 0.0054 7 6 2.2067 -1.1917 -0.0005 8 6 1.4539 -2.4972 -0.0011 9 1 0.4122 -2.3159 -0.2657 10 6 1.5242 -3.1271 1.3914 11 7 2.0551 -3.4070 -0.9795 12 6 1.3151 -4.3907 -1.5284 13 8 0.1486 -4.5227 -1.2120 14 7 1.8683 -5.2280 -2.4282 15 6 1.0639 -6.2968 -3.0253 16 6 1.9245 -7.0957 -4.0061 17 6 1.0969 -8.1948 -4.6208 18 1 0.0607 -8.3122 -4.3398 19 6 1.6627 -9.0513 -5.5414 20 7 2.9246 -8.9087 -5.8833 21 14 0.6370 -10.4141 -6.3027 22 1 -0.7420 -10.3612 -5.7543 23 1 0.5913 -10.2351 -7.7762 24 1 1.2463 -11.7301 -5.9827 25 1 -0.3633 -0.1047 1.0224 26 1 -0.3633 0.9377 -0.4205 27 1 -0.3634 -0.8331 -0.6019 28 1 1.6889 2.1423 0.0004 29 1 4.1735 2.0591 0.0010 30 1 5.3046 -0.1286 0.0014 31 1 2.5660 -3.3084 1.6561 32 1 1.0769 -2.4502 2.1193 33 1 0.9802 -4.0716 1.3909 34 1 2.9856 -3.3014 -1.2322 35 1 2.7978 -5.1201 -2.6836 36 1 0.6982 -6.9584 -2.2399 37 1 0.2176 -5.8612 -3.5565 38 1 2.2897 -6.4339 -4.7914 39 1 2.7710 -7.5313 -3.4753 40 1 3.3228 -9.5115 -6.5306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357776369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:17 Heat of formation + Delta-G solvation = -34.232719 kcal Electronic energy + Delta-G solvation = -20706.672671 eV Core-core repulsion = 17519.862639 eV Total energy + Delta-G solvation = -3186.810033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68171 -40.72924 -37.15230 -36.20889 -34.84953 -34.61551 -33.11776 -31.55127 -30.36746 -28.18622 -26.74430 -25.48336 -23.50599 -22.90956 -22.25527 -21.58158 -19.65902 -18.44875 -17.95043 -17.54281 -16.64493 -16.59464 -16.47221 -15.90299 -15.59854 -15.31434 -15.09742 -14.94003 -14.47707 -14.27176 -13.96606 -13.80947 -13.60143 -13.39268 -13.19862 -13.08576 -12.94722 -12.77006 -12.50061 -12.24117 -11.85317 -11.66474 -11.49061 -11.20283 -10.66942 -10.60691 -10.50803 -10.27523 -9.81460 -9.70385 -8.23372 -6.33768 0.09147 0.34577 1.41920 1.42442 1.56032 1.77025 2.15864 2.42088 2.81571 3.11371 3.16579 3.37828 3.67672 3.93821 3.98832 4.13546 4.26988 4.30821 4.47695 4.53356 4.54291 4.59097 4.69858 4.77238 4.81404 4.86875 4.88560 5.15006 5.20697 5.23515 5.31803 5.33160 5.51298 5.54481 5.59813 5.79166 5.79894 6.03886 6.17771 6.79731 7.01155 7.10781 7.35538 7.58804 8.88956 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033244 B = 0.002918 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.045410 B = 9591.763921 C = 9933.106278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.131 4.131 3 C -0.078 4.078 4 C -0.161 4.161 5 C 0.080 3.920 6 N -0.497 5.497 7 C 0.098 3.902 8 C 0.208 3.792 9 H 0.097 0.903 10 C -0.149 4.149 11 N -0.726 5.726 12 C 0.700 3.300 13 O -0.634 6.634 14 N -0.735 5.735 15 C 0.162 3.838 16 C 0.024 3.976 17 C -0.545 4.545 18 H 0.060 0.940 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.277 1.277 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.164 0.836 29 H 0.167 0.833 30 H 0.177 0.823 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.408 0.592 35 H 0.405 0.595 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 23.692 14.033 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.180 4.180 5 C -0.077 4.077 6 N -0.207 5.207 7 C -0.039 4.039 8 C 0.102 3.898 9 H 0.115 0.885 10 C -0.208 4.208 11 N -0.382 5.382 12 C 0.400 3.600 13 O -0.516 6.516 14 N -0.389 5.389 15 C 0.037 3.963 16 C -0.014 4.014 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.182 0.818 29 H 0.185 0.815 30 H 0.194 0.806 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.244 0.756 35 H 0.239 0.761 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.061 22.683 14.218 26.792 hybrid contribution 0.284 -0.109 -0.787 0.843 sum 1.345 22.574 13.431 26.302 Atomic orbital electron populations 1.20915 0.89172 1.03867 1.03590 1.20912 0.98552 0.93364 1.00499 1.21883 0.94594 0.98407 0.95472 1.22533 0.95442 1.00327 0.99728 1.23217 1.01396 0.87624 0.95475 1.67290 1.07620 1.33332 1.12410 1.20977 0.90292 0.94111 0.98542 1.19740 0.96532 0.84415 0.89065 0.88484 1.22059 1.02469 1.01014 0.95239 1.45043 1.14945 1.32196 1.46046 1.16106 0.84627 0.79920 0.79336 1.90841 1.17187 1.75945 1.67611 1.45255 1.15676 1.33111 1.44887 1.21081 0.93530 0.86768 0.94883 1.19131 0.94938 0.94119 0.93215 1.21495 0.97873 1.14534 1.24425 0.92183 1.25897 0.96221 1.00267 0.96920 1.70072 1.13505 1.39371 1.33776 0.85366 0.78963 0.78416 0.78111 1.18877 1.20186 1.20218 0.89405 0.89221 0.92055 0.81826 0.81542 0.80572 0.92105 0.89969 0.93152 0.75640 0.76058 0.93695 0.93710 0.97437 0.97427 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.40 71.24 0.67 -1.00 16 2 C -0.13 -2.26 5.90 -19.77 -0.12 -2.37 16 3 C -0.08 -0.96 9.84 22.46 0.22 -0.74 16 4 C -0.16 -1.83 10.11 22.36 0.23 -1.60 16 5 C 0.08 1.25 11.18 84.68 0.95 2.19 16 6 N -0.50 -10.76 9.58 -183.88 -1.76 -12.52 16 7 C 0.10 2.16 5.71 42.54 0.24 2.40 16 8 C 0.21 5.35 2.66 44.24 0.12 5.46 16 9 H 0.10 2.66 5.03 -2.39 -0.01 2.65 16 10 C -0.15 -3.58 9.47 71.98 0.68 -2.90 16 11 N -0.73 -21.40 5.06 -461.42 -2.34 -23.73 16 12 C 0.70 26.24 8.53 179.05 1.53 27.77 16 13 O -0.63 -28.07 16.01 -3.99 -0.06 -28.14 16 14 N -0.73 -27.98 5.56 -478.53 -2.66 -30.64 16 15 C 0.16 7.33 5.61 86.38 0.48 7.81 16 16 C 0.02 1.23 5.09 29.85 0.15 1.38 16 17 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.01 0.31 5.46 84.66 0.46 0.78 16 20 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 21 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 0.89 8.06 -2.39 -0.02 0.87 16 27 H 0.06 1.11 6.22 -2.38 -0.01 1.09 16 28 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 29 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 30 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.41 10.87 8.07 -92.70 -0.75 10.12 16 35 H 0.40 13.54 8.49 -92.71 -0.79 12.75 16 36 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -71.75 339.64 0.86 -70.89 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.48 Total: 24.53 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.85 Total: 8.29 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -6.47 Total: -121.89 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.06 Total: -28.14 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.75 0.86 -70.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357776369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.657 kcal (2) G-P(sol) polarization free energy of solvation -71.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds