Wall clock time and date at job start Mon Mar 30 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34125 * 125.99390 * 2 1 4 4 C 1.30505 * 109.25851 * 180.24842 * 3 2 1 5 5 N 1.35037 * 108.69794 * 359.75769 * 4 3 2 6 6 H 0.96998 * 126.39664 * 180.02562 * 5 4 3 7 7 C 1.34671 * 125.98964 * 179.82449 * 2 1 3 8 8 C 1.50706 * 126.58726 * 0.02786 * 7 2 1 9 9 C 1.50698 * 109.47294 * 84.71264 * 8 7 2 10 10 O 1.21282 * 120.00025 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.46924 * 120.62981 * 359.71541 * 11 9 8 13 13 C 1.52764 * 109.00878 * 233.58838 * 12 11 9 14 14 C 1.53047 * 109.37881 * 305.58916 * 13 12 11 15 15 C 1.50706 * 109.44731 * 181.25488 * 14 13 12 16 16 H 1.07991 * 119.99969 * 239.93931 * 15 14 13 17 17 C 1.37875 * 120.00047 * 59.93209 * 15 14 13 18 18 N 1.31517 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00048 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46986 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46723 * 120.00537 * 19 17 15 22 22 H 1.48499 * 109.47094 * 240.00280 * 19 17 15 23 23 C 1.53034 * 109.53831 * 61.23988 * 14 13 12 24 24 C 1.46929 * 120.63006 * 179.97438 * 11 9 8 25 25 H 1.08998 * 109.47009 * 270.17787 * 1 2 3 26 26 H 1.08998 * 109.46516 * 30.17554 * 1 2 3 27 27 H 1.08990 * 109.46943 * 150.17566 * 1 2 3 28 28 H 1.08001 * 125.64705 * 179.73502 * 4 3 2 29 29 H 1.09001 * 109.46953 * 204.70706 * 8 7 2 30 30 H 1.09000 * 109.47318 * 324.70304 * 8 7 2 31 31 H 1.09005 * 109.58680 * 353.42007 * 12 11 9 32 32 H 1.08997 * 109.58792 * 113.84356 * 12 11 9 33 33 H 1.08993 * 109.56511 * 185.55241 * 13 12 11 34 34 H 1.08999 * 109.38843 * 65.51080 * 13 12 11 35 35 H 1.09002 * 109.45894 * 301.21371 * 14 13 12 36 36 H 0.97001 * 120.00516 * 179.97438 * 18 17 15 37 37 H 1.09007 * 109.49570 * 178.68273 * 23 14 13 38 38 H 1.08994 * 109.52693 * 58.60417 * 23 14 13 39 39 H 1.09004 * 109.58084 * 246.15443 * 24 11 9 40 40 H 1.08999 * 109.58821 * 6.43379 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2953 1.0852 0.0000 4 6 3.5450 0.7094 -0.0053 5 7 3.5913 -0.6402 -0.0035 6 1 4.3913 -1.1887 -0.0061 7 6 2.2984 -1.0897 0.0033 8 6 1.8472 -2.5276 0.0072 9 6 1.5724 -2.9716 -1.4065 10 8 1.7272 -2.1966 -2.3265 11 7 1.1536 -4.2296 -1.6483 12 6 0.9663 -5.1814 -0.5448 13 6 1.7620 -6.4510 -0.8423 14 6 1.3587 -6.9930 -2.2156 15 6 2.1203 -8.2625 -2.4974 16 1 2.7707 -8.3224 -3.3574 17 6 1.9868 -9.3475 -1.6572 18 7 1.1945 -9.2747 -0.6100 19 14 2.9303 -10.9214 -2.0069 20 1 3.7455 -10.7471 -3.2358 21 1 3.8229 -11.2284 -0.8605 22 1 1.9728 -12.0395 -2.2020 23 6 1.6835 -5.9541 -3.2913 24 6 0.8810 -4.6770 -3.0210 25 1 -0.3633 0.0032 1.0276 26 1 -0.3632 0.8884 -0.5166 27 1 -0.3633 -0.8915 -0.5111 28 1 4.4005 1.3686 -0.0107 29 1 2.6290 -3.1526 0.4387 30 1 0.9379 -2.6215 0.6008 31 1 1.3229 -4.7377 0.3849 32 1 -0.0910 -5.4294 -0.4516 33 1 1.5520 -7.2006 -0.0793 34 1 2.8270 -6.2192 -0.8412 35 1 0.2889 -7.2020 -2.2236 36 1 1.1002 -10.0381 -0.0190 37 1 1.4176 -6.3500 -4.2715 38 1 2.7491 -5.7263 -3.2679 39 1 -0.1834 -4.8832 -3.1335 40 1 1.1790 -3.8997 -3.7246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447590954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:53 Heat of formation + Delta-G solvation = 6.802671 kcal Electronic energy + Delta-G solvation = -21698.742593 eV Core-core repulsion = 18513.711988 eV Total energy + Delta-G solvation = -3185.030605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.10069 -39.63290 -36.86843 -33.59672 -33.08690 -32.79381 -31.24067 -30.19935 -28.78176 -26.45153 -25.55768 -23.04623 -22.38503 -21.66067 -20.26601 -19.49111 -18.41393 -17.61562 -17.05586 -16.22439 -15.48326 -15.34861 -14.82323 -14.60508 -14.39267 -13.45274 -13.34808 -13.13953 -13.00734 -12.77531 -12.72768 -12.56176 -12.53077 -12.08711 -11.91602 -11.65144 -11.37184 -11.01658 -10.67150 -10.45168 -10.19188 -9.95797 -9.86596 -9.73565 -9.47719 -9.23651 -9.00032 -8.45021 -8.17265 -8.07001 -6.09976 -4.16046 1.99837 2.89559 3.06296 3.14689 3.22250 3.31245 3.35158 3.51775 4.35319 4.53276 4.73943 4.88925 4.96793 5.19722 5.27443 5.34714 5.39003 5.54754 5.74560 5.76157 5.88658 5.97411 6.00735 6.02633 6.09820 6.20510 6.22265 6.38867 6.58646 6.77828 6.82562 6.96423 7.05943 7.19089 7.37568 7.59463 7.84165 7.85230 7.96556 8.08316 8.33208 8.49497 8.87696 9.49558 10.95582 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034711 B = 0.003755 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.465271 B = 7455.483158 C = 7575.956818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.016 3.984 3 N -0.493 5.493 4 C 0.183 3.817 5 N -0.562 5.562 6 H 0.418 0.582 7 C 0.001 3.999 8 C -0.066 4.066 9 C 0.510 3.490 10 O -0.547 6.547 11 N -0.600 5.600 12 C 0.102 3.898 13 C -0.125 4.125 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.112 3.888 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.206 0.794 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.037 0.963 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 12.745 4.500 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 N -0.213 5.213 4 C -0.100 4.100 5 N -0.165 5.165 6 H 0.256 0.744 7 C -0.115 4.115 8 C -0.107 4.107 9 C 0.297 3.703 10 O -0.425 6.425 11 N -0.333 5.333 12 C -0.020 4.020 13 C -0.164 4.164 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.161 4.161 24 C -0.010 4.010 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.223 0.777 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.252 13.867 4.158 14.531 hybrid contribution 1.404 -2.139 -0.083 2.560 sum 2.656 11.728 4.075 12.697 Atomic orbital electron populations 1.20015 0.87925 1.02790 1.01709 1.20385 0.96317 0.87780 1.06827 1.70136 1.00572 1.30724 1.19916 1.24807 0.97303 0.81892 1.06042 1.43122 1.08038 1.08682 1.56695 0.74445 1.20280 0.84016 0.95576 1.11585 1.20087 1.03850 0.90385 0.96348 1.20352 0.77486 0.81833 0.90644 1.90683 1.52978 1.52909 1.45940 1.48247 1.65296 1.10742 1.08972 1.21992 1.01244 0.91241 0.87560 1.21953 0.97003 0.94045 1.03350 1.18640 0.97069 0.91835 0.89499 1.21245 1.26492 0.97002 1.10268 0.92668 1.24954 0.95262 0.98590 0.95128 1.69835 1.37778 1.30675 1.14795 0.86565 0.79851 0.83518 0.78254 1.19845 1.21062 1.20994 1.22009 0.98837 0.94522 1.00736 1.21705 0.99518 0.97543 0.82241 0.91591 0.91222 0.91518 0.77728 0.88206 0.86760 0.91518 0.91673 0.87647 0.94389 0.95357 0.92996 0.92124 0.93095 0.92122 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.14 36.01 0.37 -0.46 16 2 C 0.02 0.23 7.09 -82.85 -0.59 -0.35 16 3 N -0.49 -7.33 11.25 -10.87 -0.12 -7.46 16 4 C 0.18 2.11 13.04 -90.38 -1.18 0.93 16 5 N -0.56 -6.33 6.15 -10.30 -0.06 -6.39 16 6 H 0.42 3.45 8.96 -40.82 -0.37 3.08 16 7 C 0.00 0.02 5.73 -81.60 -0.47 -0.45 16 8 C -0.07 -0.82 4.16 -29.03 -0.12 -0.94 16 9 C 0.51 8.35 7.69 -10.99 -0.08 8.27 16 10 O -0.55 -10.80 15.45 5.56 0.09 -10.72 16 11 N -0.60 -10.09 2.98 -173.00 -0.52 -10.60 16 12 C 0.10 1.66 6.31 -3.93 -0.02 1.63 16 13 C -0.13 -2.59 5.14 -26.83 -0.14 -2.72 16 14 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 15 C -0.51 -13.26 8.56 -34.44 -0.29 -13.55 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -23.69 11.31 55.43 0.63 -23.06 16 19 Si 0.89 20.35 29.54 -169.99 -5.02 15.32 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.12 -2.44 5.30 -26.60 -0.14 -2.58 16 24 C 0.11 1.98 6.44 -3.69 -0.02 1.96 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 28 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.10 1.08 7.68 -51.93 -0.40 0.68 16 30 H 0.11 1.20 7.85 -51.93 -0.41 0.80 16 31 H 0.07 0.88 5.94 -51.93 -0.31 0.57 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.11 2.45 6.03 -51.93 -0.31 2.13 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -31.86 325.56 -9.00 -40.86 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.91 Total: 2.99 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.98 Total: -5.85 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.07 Total: -47.51 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.86 -9.00 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447590954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.663 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds