Wall clock time and date at job start Mon Mar 30 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34125 * 125.99390 * 2 1 4 4 C 1.30505 * 109.25851 * 180.24842 * 3 2 1 5 5 N 1.35037 * 108.69794 * 359.75769 * 4 3 2 6 6 H 0.96998 * 126.39664 * 180.02562 * 5 4 3 7 7 C 1.34671 * 125.98964 * 179.82449 * 2 1 3 8 8 C 1.50706 * 126.58726 * 0.02786 * 7 2 1 9 9 C 1.50698 * 109.47294 * 84.71264 * 8 7 2 10 10 O 1.21282 * 120.00025 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.46924 * 120.62981 * 359.71541 * 11 9 8 13 13 C 1.52764 * 109.00878 * 233.58838 * 12 11 9 14 14 C 1.53047 * 109.37881 * 305.58916 * 13 12 11 15 15 C 1.50706 * 109.44731 * 181.25488 * 14 13 12 16 16 H 1.07991 * 119.99969 * 239.93931 * 15 14 13 17 17 C 1.37875 * 120.00047 * 59.93209 * 15 14 13 18 18 N 1.31517 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00048 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46986 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46723 * 120.00537 * 19 17 15 22 22 H 1.48499 * 109.47094 * 240.00280 * 19 17 15 23 23 C 1.53034 * 109.53831 * 61.23988 * 14 13 12 24 24 C 1.46929 * 120.63006 * 179.97438 * 11 9 8 25 25 H 1.08998 * 109.47009 * 270.17787 * 1 2 3 26 26 H 1.08998 * 109.46516 * 30.17554 * 1 2 3 27 27 H 1.08990 * 109.46943 * 150.17566 * 1 2 3 28 28 H 1.08001 * 125.64705 * 179.73502 * 4 3 2 29 29 H 1.09001 * 109.46953 * 204.70706 * 8 7 2 30 30 H 1.09000 * 109.47318 * 324.70304 * 8 7 2 31 31 H 1.09005 * 109.58680 * 353.42007 * 12 11 9 32 32 H 1.08997 * 109.58792 * 113.84356 * 12 11 9 33 33 H 1.08993 * 109.56511 * 185.55241 * 13 12 11 34 34 H 1.08999 * 109.38843 * 65.51080 * 13 12 11 35 35 H 1.09002 * 109.45894 * 301.21371 * 14 13 12 36 36 H 0.97001 * 120.00516 * 179.97438 * 18 17 15 37 37 H 1.09007 * 109.49570 * 178.68273 * 23 14 13 38 38 H 1.08994 * 109.52693 * 58.60417 * 23 14 13 39 39 H 1.09004 * 109.58084 * 246.15443 * 24 11 9 40 40 H 1.08999 * 109.58821 * 6.43379 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2953 1.0852 0.0000 4 6 3.5450 0.7094 -0.0053 5 7 3.5913 -0.6402 -0.0035 6 1 4.3913 -1.1887 -0.0061 7 6 2.2984 -1.0897 0.0033 8 6 1.8472 -2.5276 0.0072 9 6 1.5724 -2.9716 -1.4065 10 8 1.7272 -2.1966 -2.3265 11 7 1.1536 -4.2296 -1.6483 12 6 0.9663 -5.1814 -0.5448 13 6 1.7620 -6.4510 -0.8423 14 6 1.3587 -6.9930 -2.2156 15 6 2.1203 -8.2625 -2.4974 16 1 2.7707 -8.3224 -3.3574 17 6 1.9868 -9.3475 -1.6572 18 7 1.1945 -9.2747 -0.6100 19 14 2.9303 -10.9214 -2.0069 20 1 3.7455 -10.7471 -3.2358 21 1 3.8229 -11.2284 -0.8605 22 1 1.9728 -12.0395 -2.2020 23 6 1.6835 -5.9541 -3.2913 24 6 0.8810 -4.6770 -3.0210 25 1 -0.3633 0.0032 1.0276 26 1 -0.3632 0.8884 -0.5166 27 1 -0.3633 -0.8915 -0.5111 28 1 4.4005 1.3686 -0.0107 29 1 2.6290 -3.1526 0.4387 30 1 0.9379 -2.6215 0.6008 31 1 1.3229 -4.7377 0.3849 32 1 -0.0910 -5.4294 -0.4516 33 1 1.5520 -7.2006 -0.0793 34 1 2.8270 -6.2192 -0.8412 35 1 0.2889 -7.2020 -2.2236 36 1 1.1002 -10.0381 -0.0190 37 1 1.4176 -6.3500 -4.2715 38 1 2.7491 -5.7263 -3.2679 39 1 -0.1834 -4.8832 -3.1335 40 1 1.1790 -3.8997 -3.7246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001447590954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:53 Heat of formation + Delta-G solvation = -12.038580 kcal Electronic energy + Delta-G solvation = -21699.559610 eV Core-core repulsion = 18513.711988 eV Total energy + Delta-G solvation = -3185.847623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.02993 -40.98756 -38.39399 -35.32154 -34.01236 -33.95513 -32.83575 -31.71167 -29.84784 -28.02376 -26.71742 -24.65387 -23.87839 -22.64290 -21.67085 -20.61335 -19.75850 -18.63824 -18.55131 -17.92923 -16.78806 -16.55163 -16.42524 -15.86650 -15.45355 -14.91465 -14.79406 -14.64868 -14.31451 -14.04118 -13.98406 -13.69779 -13.62034 -13.21304 -13.12127 -13.04658 -13.00170 -12.81311 -12.43132 -12.14611 -11.92237 -11.47003 -11.02929 -11.00259 -10.92516 -10.80738 -10.63908 -10.38432 -9.52944 -9.13498 -8.07809 -6.20459 1.04590 1.39985 1.44173 1.53301 1.64054 2.05644 2.23607 2.37714 2.44326 3.19059 3.60658 3.71253 3.89264 4.05808 4.19639 4.27854 4.37900 4.42677 4.47598 4.50720 4.54219 4.59693 4.77828 4.87366 4.88157 5.00188 5.04192 5.09882 5.19412 5.26823 5.27354 5.44543 5.56163 5.66611 5.84073 6.00307 6.16149 6.40418 6.52057 6.61102 6.88977 7.15838 7.20271 7.47376 8.95580 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034711 B = 0.003755 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.465271 B = 7455.483158 C = 7575.956818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.010 4.010 3 N -0.536 5.536 4 C 0.192 3.808 5 N -0.557 5.557 6 H 0.432 0.568 7 C -0.014 4.014 8 C -0.058 4.058 9 C 0.511 3.489 10 O -0.583 6.583 11 N -0.602 5.602 12 C 0.112 3.888 13 C -0.116 4.116 14 C 0.044 3.956 15 C -0.535 4.535 16 H 0.044 0.956 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 0.946 3.054 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.282 1.282 23 C -0.112 4.112 24 C 0.118 3.882 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.246 0.754 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.059 0.941 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 13.245 5.571 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 N -0.256 5.256 4 C -0.092 4.092 5 N -0.161 5.161 6 H 0.272 0.728 7 C -0.130 4.130 8 C -0.098 4.098 9 C 0.300 3.700 10 O -0.463 6.463 11 N -0.334 5.334 12 C -0.010 4.010 13 C -0.155 4.155 14 C 0.026 3.974 15 C -0.573 4.573 16 H 0.063 0.937 17 C -0.179 4.179 18 N -0.549 5.549 19 Si 0.772 3.228 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.208 1.208 23 C -0.151 4.151 24 C -0.005 4.005 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.262 0.738 29 H 0.141 0.859 30 H 0.157 0.843 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.979 14.351 5.239 15.405 hybrid contribution 1.213 -2.272 -0.458 2.616 sum 3.193 12.079 4.781 13.377 Atomic orbital electron populations 1.20034 0.87250 1.02269 1.02734 1.20799 0.97313 0.88347 1.07397 1.70125 1.02080 1.31563 1.21865 1.25621 0.97571 0.82435 1.03543 1.43155 1.08036 1.08887 1.56011 0.72811 1.20394 0.84770 0.95703 1.12132 1.20122 1.05752 0.90205 0.93757 1.20990 0.76074 0.80945 0.91955 1.90671 1.54337 1.53730 1.47578 1.48272 1.65430 1.11220 1.08498 1.21901 1.00860 0.89387 0.88821 1.21719 0.97132 0.95581 1.01074 1.18621 0.95088 0.91853 0.91860 1.21567 1.26845 0.98789 1.10095 0.93749 1.25576 0.96085 1.01103 0.95086 1.69935 1.38440 1.31331 1.15195 0.85697 0.78723 0.80307 0.78042 1.19907 1.20506 1.20785 1.21846 0.98509 0.94889 0.99828 1.21548 0.99565 0.96148 0.83245 0.89768 0.91917 0.91799 0.73845 0.85890 0.84349 0.87528 0.91247 0.90059 0.95173 0.97789 0.92896 0.92197 0.94091 0.91233 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.54 10.14 71.24 0.72 -0.82 16 2 C -0.01 -0.28 7.09 41.39 0.29 0.01 16 3 N -0.54 -15.19 11.25 -188.31 -2.12 -17.31 16 4 C 0.19 3.97 13.04 180.26 2.35 6.32 16 5 N -0.56 -11.14 6.15 -186.49 -1.15 -12.29 16 6 H 0.43 5.92 8.96 -92.71 -0.83 5.09 16 7 C -0.01 -0.34 5.73 40.95 0.23 -0.11 16 8 C -0.06 -1.27 4.16 29.10 0.12 -1.15 16 9 C 0.51 15.70 7.69 87.66 0.67 16.38 16 10 O -0.58 -22.36 15.45 -3.04 -0.05 -22.41 16 11 N -0.60 -19.18 2.98 -819.65 -2.44 -21.62 16 12 C 0.11 3.41 6.31 86.22 0.54 3.95 16 13 C -0.12 -4.75 5.14 30.53 0.16 -4.59 16 14 C 0.04 2.04 2.07 -11.51 -0.02 2.02 16 15 C -0.53 -28.03 8.56 25.60 0.22 -27.81 16 16 H 0.04 2.35 7.74 -2.92 -0.02 2.33 16 17 C 0.02 1.08 5.30 84.65 0.45 1.53 16 18 N -0.91 -48.42 11.31 21.45 0.24 -48.17 16 19 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 C -0.11 -4.47 5.30 30.68 0.16 -4.31 16 24 C 0.12 4.08 6.44 86.37 0.56 4.63 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.50 7.89 -2.39 -0.02 1.49 16 28 H 0.25 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.12 2.15 7.68 -2.39 -0.02 2.13 16 30 H 0.14 2.38 7.85 -2.39 -0.02 2.36 16 31 H 0.11 2.41 5.94 -2.38 -0.01 2.40 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 3.75 6.03 -2.39 -0.01 3.74 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.26 13.29 8.31 -92.71 -0.77 12.51 16 37 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.08 2.69 7.00 -2.39 -0.02 2.67 16 Total: -1.00 -69.27 325.56 3.19 -66.08 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.22 Total: 15.94 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 6.46 Total: -3.94 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -5.46 Total: -99.39 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -69.27 3.19 -66.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447590954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.040 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds