Wall clock time and date at job start Mon Mar 30 2020 01:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38594 * 120.32404 * 2 1 4 4 N 1.31495 * 120.90176 * 179.76548 * 3 2 1 5 5 C 1.32743 * 121.64288 * 0.52937 * 4 3 2 6 6 C 1.48170 * 119.72454 * 179.75283 * 5 4 3 7 7 O 1.21517 * 119.99540 * 179.72339 * 6 5 4 8 8 N 1.34770 * 119.99846 * 359.72424 * 6 5 4 9 9 C 1.46500 * 119.99875 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47295 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47289 * 294.99658 * 10 9 8 12 12 C 1.53005 * 109.47452 * 174.99734 * 10 9 8 13 13 N 1.46506 * 109.47289 * 54.99786 * 10 9 8 14 14 C 1.36934 * 120.00113 * 205.00330 * 13 10 9 15 15 H 1.07995 * 120.00266 * 359.97438 * 14 13 10 16 16 C 1.38815 * 119.99987 * 180.02562 * 14 13 10 17 17 N 1.31616 * 119.99762 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00156 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46930 * 59.99402 * 18 16 14 20 20 H 1.48500 * 109.47109 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46841 * 299.99779 * 18 16 14 22 22 C 1.39268 * 120.55171 * 359.47007 * 5 4 3 23 23 C 1.38583 * 120.32458 * 180.02562 * 2 1 3 24 24 C 1.50703 * 120.75444 * 359.94992 * 23 2 1 25 25 H 1.09005 * 109.46985 * 269.97677 * 1 2 3 26 26 H 1.08999 * 109.47221 * 29.97387 * 1 2 3 27 27 H 1.08998 * 109.47175 * 149.97711 * 1 2 3 28 28 H 1.08003 * 119.55321 * 0.02562 * 3 2 1 29 29 H 0.96999 * 120.00413 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.47485 * 59.99811 * 9 8 6 31 31 H 1.09008 * 109.47071 * 299.99783 * 9 8 6 32 32 H 1.09002 * 109.46935 * 59.99874 * 12 10 9 33 33 H 1.08992 * 109.47061 * 179.97438 * 12 10 9 34 34 H 1.09001 * 109.46812 * 300.00216 * 12 10 9 35 35 H 0.97006 * 119.99584 * 25.00028 * 13 10 9 36 36 H 0.97000 * 120.00217 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.46813 * 180.27766 * 22 5 4 38 38 H 1.08997 * 109.47282 * 270.02194 * 24 23 2 39 39 H 1.09002 * 109.46847 * 30.02894 * 24 23 2 40 40 H 1.09002 * 109.47148 * 150.02554 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5217 1.2096 0.0046 5 6 4.2295 0.0866 -0.0010 6 6 5.7098 0.1512 -0.0010 7 8 6.3626 -0.8738 -0.0010 8 7 6.3321 1.3466 -0.0009 9 6 7.7957 1.4104 -0.0015 10 6 8.2424 2.8738 -0.0019 11 1 7.9328 3.3479 -0.9333 12 6 9.7658 2.9421 0.1233 13 7 7.6276 3.5724 1.1296 14 6 7.4398 4.9278 1.0772 15 1 7.7452 5.4818 0.2020 16 6 6.8578 5.5898 2.1496 17 7 6.4860 4.9146 3.2165 18 14 6.6022 7.4388 2.0785 19 1 5.7221 7.7730 0.9300 20 1 5.9667 7.8995 3.3391 21 1 7.9141 8.1137 1.9096 22 6 3.5923 -1.1518 -0.0010 23 6 2.2068 -1.1962 -0.0005 24 6 1.4780 -2.5153 0.0000 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6648 2.1305 0.0004 29 1 5.8110 2.1647 -0.0012 30 1 8.1808 0.9132 -0.8917 31 1 8.1814 0.9127 0.8883 32 1 10.2232 2.4223 -0.7186 33 1 10.0839 3.9845 0.1225 34 1 10.0754 2.4679 1.0547 35 1 7.3536 3.0747 1.9159 36 1 6.0790 5.3771 3.9657 37 1 4.1695 -2.0646 -0.0010 38 1 1.3027 -2.8332 1.0278 39 1 0.5231 -2.4030 -0.5136 40 1 2.0811 -3.2638 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480506887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:25 Heat of formation + Delta-G solvation = -3.117204 kcal Electronic energy + Delta-G solvation = -21050.401208 eV Core-core repulsion = 17864.940445 eV Total energy + Delta-G solvation = -3185.460763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63784 -38.85638 -36.25859 -34.73356 -33.42072 -32.47266 -31.74693 -28.83849 -28.52014 -27.49603 -25.62335 -23.65629 -22.82916 -22.51341 -20.11992 -19.78532 -17.65742 -17.15563 -16.85571 -15.39238 -15.28374 -15.23372 -14.93868 -14.67502 -14.33428 -13.77684 -13.62406 -13.21283 -13.11675 -12.98981 -12.79637 -12.72023 -12.17107 -12.13067 -12.05143 -11.88476 -11.66547 -11.33384 -10.82030 -10.71566 -10.33602 -10.03976 -9.97413 -9.66248 -9.54217 -9.35627 -9.00536 -8.92493 -8.53323 -6.98409 -5.75174 -3.05315 0.69266 1.18863 2.94157 3.44493 3.48753 3.49703 3.50391 3.96582 4.28936 4.52232 4.59480 4.69044 4.72752 4.77164 5.20789 5.25424 5.29052 5.38964 5.45102 5.50583 5.53443 5.56737 5.62849 5.76335 5.79248 5.94633 5.99013 6.11718 6.17814 6.22775 6.36094 6.59562 6.60908 6.78939 6.87859 7.08012 7.70596 7.75322 8.09596 8.41790 8.57818 9.53644 10.08713 10.44367 11.46811 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.004626 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.630888 B = 6051.391012 C = 7449.249437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.125 4.125 3 C 0.104 3.896 4 N -0.448 5.448 5 C 0.082 3.918 6 C 0.565 3.435 7 O -0.552 6.552 8 N -0.689 5.689 9 C 0.112 3.888 10 C 0.159 3.841 11 H 0.054 0.946 12 C -0.162 4.162 13 N -0.723 5.723 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.009 4.009 17 N -0.930 5.930 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.112 4.112 23 C -0.057 4.057 24 C -0.116 4.116 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.162 0.838 29 H 0.422 0.578 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 -12.465 -7.895 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.056 4.056 4 N -0.159 5.159 5 C -0.056 4.056 6 C 0.349 3.651 7 O -0.430 6.430 8 N -0.339 5.339 9 C -0.012 4.012 10 C 0.049 3.951 11 H 0.072 0.928 12 C -0.222 4.222 13 N -0.365 5.365 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.133 4.133 23 C -0.065 4.065 24 C -0.173 4.173 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.179 0.821 29 H 0.260 0.740 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.163 0.837 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.946 -12.182 -7.918 17.607 hybrid contribution -0.834 0.623 0.427 1.125 sum -10.780 -11.559 -7.491 17.491 Atomic orbital electron populations 1.20806 0.90101 1.03263 1.02841 1.21006 0.97645 0.93700 1.00359 1.22736 0.89392 0.97595 0.95867 1.67640 1.08579 1.30139 1.09505 1.21213 0.94526 0.89504 1.00365 1.17870 0.85748 0.84160 0.77310 1.90731 1.65999 1.34403 1.51897 1.45877 1.08111 1.08845 1.71096 1.21778 0.79224 0.98647 1.01574 1.20509 0.92197 0.89290 0.93104 0.92827 1.22361 0.98031 1.01765 1.00091 1.42451 1.72162 1.05391 1.16511 1.19167 1.33551 0.83788 1.00832 0.91187 1.24726 1.01534 0.97793 0.96493 1.69659 1.46954 1.34655 1.06478 0.86293 0.77745 0.85607 0.76654 1.21251 1.21787 1.21352 1.21966 0.94052 0.99075 0.98218 1.20150 0.93272 0.95719 0.97332 1.20857 1.00299 0.93088 1.03011 0.90568 0.90943 0.90975 0.82131 0.73969 0.91621 0.91598 0.94198 0.92293 0.93193 0.78065 0.93487 0.83655 0.90402 0.90683 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.65 36.01 0.35 -0.46 16 2 C -0.12 -1.36 5.91 -104.36 -0.62 -1.97 16 3 C 0.10 1.38 10.86 -17.56 -0.19 1.18 16 4 N -0.45 -7.44 9.54 -9.80 -0.09 -7.54 16 5 C 0.08 1.37 6.75 -83.01 -0.56 0.81 16 6 C 0.56 10.64 7.81 -12.18 -0.10 10.54 16 7 O -0.55 -11.22 16.32 5.35 0.09 -11.13 16 8 N -0.69 -13.07 5.38 -61.15 -0.33 -13.40 16 9 C 0.11 2.04 5.23 -4.04 -0.02 2.02 16 10 C 0.16 3.14 3.05 -67.93 -0.21 2.93 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 13 N -0.72 -17.72 4.56 -53.42 -0.24 -17.96 16 14 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 18 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.11 -1.56 9.34 -39.05 -0.36 -1.93 16 23 C -0.06 -0.64 5.91 -104.35 -0.62 -1.25 16 24 C -0.12 -0.87 9.67 36.01 0.35 -0.52 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.45 8.09 -51.93 -0.42 0.02 16 27 H 0.07 0.41 6.06 -51.93 -0.31 0.10 16 28 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 29 H 0.42 8.51 7.47 -40.82 -0.30 8.21 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.39 10.28 7.80 -40.82 -0.32 9.96 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.15 1.91 7.64 -52.49 -0.40 1.51 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.44 6.07 -51.93 -0.32 0.12 16 40 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -32.03 339.35 -7.48 -39.51 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -5.84 Total: 13.64 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.87 Total: 1.75 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: 0.06 Total: -66.06 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.03 -7.48 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480506887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.391 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds