Wall clock time and date at job start Mon Mar 30 2020 01:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38594 * 120.32404 * 2 1 4 4 N 1.31495 * 120.90176 * 179.76548 * 3 2 1 5 5 C 1.32743 * 121.64288 * 0.52937 * 4 3 2 6 6 C 1.48170 * 119.72454 * 179.75283 * 5 4 3 7 7 O 1.21517 * 119.99540 * 179.72339 * 6 5 4 8 8 N 1.34770 * 119.99846 * 359.72424 * 6 5 4 9 9 C 1.46500 * 119.99875 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47295 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47289 * 294.99658 * 10 9 8 12 12 C 1.53005 * 109.47452 * 174.99734 * 10 9 8 13 13 N 1.46506 * 109.47289 * 54.99786 * 10 9 8 14 14 C 1.36934 * 120.00113 * 205.00330 * 13 10 9 15 15 H 1.07995 * 120.00266 * 359.97438 * 14 13 10 16 16 C 1.38815 * 119.99987 * 180.02562 * 14 13 10 17 17 N 1.31616 * 119.99762 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00156 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46930 * 59.99402 * 18 16 14 20 20 H 1.48500 * 109.47109 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46841 * 299.99779 * 18 16 14 22 22 C 1.39268 * 120.55171 * 359.47007 * 5 4 3 23 23 C 1.38583 * 120.32458 * 180.02562 * 2 1 3 24 24 C 1.50703 * 120.75444 * 359.94992 * 23 2 1 25 25 H 1.09005 * 109.46985 * 269.97677 * 1 2 3 26 26 H 1.08999 * 109.47221 * 29.97387 * 1 2 3 27 27 H 1.08998 * 109.47175 * 149.97711 * 1 2 3 28 28 H 1.08003 * 119.55321 * 0.02562 * 3 2 1 29 29 H 0.96999 * 120.00413 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.47485 * 59.99811 * 9 8 6 31 31 H 1.09008 * 109.47071 * 299.99783 * 9 8 6 32 32 H 1.09002 * 109.46935 * 59.99874 * 12 10 9 33 33 H 1.08992 * 109.47061 * 179.97438 * 12 10 9 34 34 H 1.09001 * 109.46812 * 300.00216 * 12 10 9 35 35 H 0.97006 * 119.99584 * 25.00028 * 13 10 9 36 36 H 0.97000 * 120.00217 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.46813 * 180.27766 * 22 5 4 38 38 H 1.08997 * 109.47282 * 270.02194 * 24 23 2 39 39 H 1.09002 * 109.46847 * 30.02894 * 24 23 2 40 40 H 1.09002 * 109.47148 * 150.02554 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5217 1.2096 0.0046 5 6 4.2295 0.0866 -0.0010 6 6 5.7098 0.1512 -0.0010 7 8 6.3626 -0.8738 -0.0010 8 7 6.3321 1.3466 -0.0009 9 6 7.7957 1.4104 -0.0015 10 6 8.2424 2.8738 -0.0019 11 1 7.9328 3.3479 -0.9333 12 6 9.7658 2.9421 0.1233 13 7 7.6276 3.5724 1.1296 14 6 7.4398 4.9278 1.0772 15 1 7.7452 5.4818 0.2020 16 6 6.8578 5.5898 2.1496 17 7 6.4860 4.9146 3.2165 18 14 6.6022 7.4388 2.0785 19 1 5.7221 7.7730 0.9300 20 1 5.9667 7.8995 3.3391 21 1 7.9141 8.1137 1.9096 22 6 3.5923 -1.1518 -0.0010 23 6 2.2068 -1.1962 -0.0005 24 6 1.4780 -2.5153 0.0000 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6648 2.1305 0.0004 29 1 5.8110 2.1647 -0.0012 30 1 8.1808 0.9132 -0.8917 31 1 8.1814 0.9127 0.8883 32 1 10.2232 2.4223 -0.7186 33 1 10.0839 3.9845 0.1225 34 1 10.0754 2.4679 1.0547 35 1 7.3536 3.0747 1.9159 36 1 6.0790 5.3771 3.9657 37 1 4.1695 -2.0646 -0.0010 38 1 1.3027 -2.8332 1.0278 39 1 0.5231 -2.4030 -0.5136 40 1 2.0811 -3.2638 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480506887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:25 Heat of formation + Delta-G solvation = -25.118644 kcal Electronic energy + Delta-G solvation = -21051.355262 eV Core-core repulsion = 17864.940445 eV Total energy + Delta-G solvation = -3186.414817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75084 -40.21745 -37.93353 -35.72841 -35.12104 -33.60301 -33.37270 -30.62278 -29.48775 -28.43789 -26.92759 -25.65156 -23.78743 -23.67167 -21.73973 -21.08599 -19.41317 -18.63895 -18.04037 -16.97379 -16.71092 -16.39837 -16.18577 -15.92335 -15.71723 -15.22428 -15.13477 -14.61734 -14.04683 -13.85402 -13.75853 -13.66766 -13.65124 -13.56062 -13.31341 -13.07693 -12.73602 -12.70886 -12.50689 -12.44506 -12.23057 -11.73460 -11.66458 -11.39966 -10.95490 -10.50395 -10.48268 -10.18524 -9.85135 -9.02355 -7.90242 -5.19856 -0.39089 0.21029 1.49342 1.51848 1.57617 1.65553 2.13949 2.58569 2.81456 3.16650 3.43857 3.70383 3.74054 3.87307 3.88310 3.91599 3.95657 4.26869 4.36814 4.53509 4.60920 4.64292 4.70587 4.70876 4.75968 4.83429 4.89761 5.00322 5.05655 5.13220 5.21426 5.24082 5.34545 5.38129 5.55523 5.56806 5.70480 6.29449 6.42236 6.81899 7.11417 7.36514 8.08486 8.33356 9.32624 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.004626 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.630888 B = 6051.391012 C = 7449.249437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C 0.087 3.913 4 N -0.483 5.483 5 C 0.046 3.954 6 C 0.561 3.439 7 O -0.575 6.575 8 N -0.694 5.694 9 C 0.119 3.881 10 C 0.158 3.842 11 H 0.057 0.943 12 C -0.153 4.153 13 N -0.732 5.732 14 C -0.238 4.238 15 H 0.078 0.922 16 C -0.071 4.071 17 N -0.968 5.968 18 Si 0.970 3.030 19 H -0.277 1.277 20 H -0.299 1.299 21 H -0.280 1.280 22 C -0.116 4.116 23 C -0.056 4.056 24 C -0.114 4.114 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.179 0.821 29 H 0.415 0.585 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.371 0.629 36 H 0.249 0.751 37 H 0.147 0.853 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -13.038 -9.126 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.074 4.074 4 N -0.194 5.194 5 C -0.090 4.090 6 C 0.347 3.653 7 O -0.456 6.456 8 N -0.343 5.343 9 C -0.005 4.005 10 C 0.050 3.950 11 H 0.075 0.925 12 C -0.213 4.213 13 N -0.373 5.373 14 C -0.369 4.369 15 H 0.096 0.904 16 C -0.263 4.263 17 N -0.619 5.619 18 Si 0.800 3.200 19 H -0.203 1.203 20 H -0.226 1.226 21 H -0.206 1.206 22 C -0.137 4.137 23 C -0.064 4.064 24 C -0.170 4.170 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.196 0.804 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.203 0.797 36 H 0.057 0.943 37 H 0.164 0.836 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.603 -12.767 -9.202 19.553 hybrid contribution -0.379 0.728 0.744 1.108 sum -11.982 -12.039 -8.458 18.975 Atomic orbital electron populations 1.20941 0.86798 1.05029 1.04072 1.21445 0.99812 0.92567 0.97344 1.23207 0.88573 0.99586 0.96001 1.67519 1.10390 1.30631 1.10905 1.20990 0.93345 0.90841 1.03867 1.18286 0.87010 0.83586 0.76389 1.90690 1.66906 1.34837 1.53136 1.45914 1.08264 1.08750 1.71384 1.21722 0.79151 0.97586 1.02038 1.20695 0.93205 0.89664 0.91437 0.92489 1.22217 0.96254 1.01422 1.01407 1.42588 1.72665 1.04820 1.17251 1.19553 1.31787 0.85008 1.00602 0.90410 1.25489 1.02394 1.01934 0.96488 1.69829 1.48755 1.36092 1.07194 0.85265 0.77759 0.80718 0.76307 1.20340 1.22582 1.20615 1.22107 0.95575 0.97979 0.98063 1.20612 0.92244 0.97792 0.95748 1.20971 1.00953 0.90862 1.04208 0.89302 0.89685 0.88794 0.80369 0.74782 0.89516 0.92614 0.90579 0.93506 0.93763 0.79713 0.94261 0.83551 0.89173 0.88259 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.65 71.24 0.69 -0.47 16 2 C -0.11 -2.15 5.91 -19.69 -0.12 -2.27 16 3 C 0.09 2.24 10.86 84.83 0.92 3.16 16 4 N -0.48 -16.49 9.54 -184.91 -1.76 -18.26 16 5 C 0.05 1.59 6.75 41.89 0.28 1.87 16 6 C 0.56 21.96 7.81 86.88 0.68 22.64 16 7 O -0.57 -24.09 16.32 -3.77 -0.06 -24.15 16 8 N -0.69 -27.24 5.38 -465.66 -2.50 -29.74 16 9 C 0.12 4.37 5.23 86.38 0.45 4.82 16 10 C 0.16 6.21 3.05 44.99 0.14 6.35 16 11 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 12 C -0.15 -5.28 9.49 71.98 0.68 -4.60 16 13 N -0.73 -36.52 4.56 -322.93 -1.47 -37.99 16 14 C -0.24 -12.97 9.93 84.03 0.83 -12.14 16 15 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 16 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 17 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 18 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 C -0.12 -3.23 9.34 22.61 0.21 -3.02 16 23 C -0.06 -1.15 5.91 -19.69 -0.12 -1.27 16 24 C -0.11 -1.32 9.67 71.24 0.69 -0.63 16 25 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 27 H 0.09 0.61 6.06 -2.39 -0.01 0.60 16 28 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.41 17.47 7.47 -92.71 -0.69 16.78 16 30 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.37 20.48 7.80 -92.70 -0.72 19.75 16 36 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.15 3.90 7.64 -2.91 -0.02 3.87 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.69 6.07 -2.39 -0.01 0.68 16 40 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 Total: -1.00 -70.98 339.35 1.96 -69.02 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -0.36 Total: 41.41 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.81 Total: 10.89 kcal Atomic # 7 Polarization: -139.77 SS G_CDS: -5.46 Total: -145.23 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.06 Total: -24.15 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -70.98 1.96 -69.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480506887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.905 kcal (2) G-P(sol) polarization free energy of solvation -70.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds