Wall clock time and date at job start Mon Mar 30 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34652 * 125.79831 * 2 1 4 4 H 0.97001 * 124.85441 * 0.02562 * 3 2 1 5 5 C 1.36450 * 110.29712 * 180.02562 * 3 2 1 6 6 C 1.34489 * 108.85728 * 359.71401 * 5 3 2 7 7 C 1.36769 * 125.80136 * 180.02562 * 2 1 3 8 8 C 1.47262 * 126.94224 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00088 * 359.97438 * 8 7 2 10 10 N 1.34779 * 119.99792 * 180.02562 * 8 7 2 11 11 C 1.47023 * 125.64916 * 359.95410 * 10 8 7 12 12 C 1.54368 * 107.28806 * 178.94496 * 11 10 8 13 13 C 1.55153 * 102.92223 * 337.86602 * 12 11 10 14 14 H 1.09011 * 111.00187 * 277.35854 * 13 12 11 15 15 C 1.53001 * 111.01013 * 153.54913 * 13 12 11 16 16 N 1.46496 * 109.47205 * 178.17855 * 15 13 12 17 17 C 1.36945 * 119.99718 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47423 * 125.64888 * 180.02562 * 10 8 7 26 26 H 1.08994 * 109.47464 * 269.97406 * 1 2 3 27 27 H 1.08997 * 109.46855 * 29.98147 * 1 2 3 28 28 H 1.09005 * 109.47059 * 149.97597 * 1 2 3 29 29 H 1.08002 * 125.57232 * 179.97438 * 5 3 2 30 30 H 1.07995 * 126.83946 * 180.26032 * 6 5 3 31 31 H 1.09003 * 109.88176 * 298.39877 * 11 10 8 32 32 H 1.08997 * 109.88043 * 59.40528 * 11 10 8 33 33 H 1.09002 * 110.75858 * 219.49035 * 12 11 10 34 34 H 1.09009 * 110.70229 * 96.20587 * 12 11 10 35 35 H 1.08997 * 109.46922 * 58.16897 * 15 13 12 36 36 H 1.09000 * 109.46483 * 298.17716 * 15 13 12 37 37 H 0.96996 * 120.00499 * 359.97438 * 16 15 13 38 38 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 39 39 H 1.08997 * 110.36616 * 85.24815 * 25 10 8 40 40 H 1.09004 * 110.45952 * 322.97659 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2946 1.0921 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0006 6 6 3.6882 -0.6151 0.0054 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5156 -0.0006 9 8 0.6840 -2.7839 0.0003 10 7 2.7850 -3.5054 -0.0006 11 6 4.2440 -3.3237 -0.0014 12 6 4.8813 -4.7295 0.0260 13 6 3.7477 -5.6130 0.6105 14 1 3.7299 -5.5562 1.6990 15 6 3.8857 -7.0630 0.1423 16 7 2.8264 -7.8744 0.7471 17 6 2.7477 -9.2134 0.4713 18 1 3.4662 -9.6712 -0.1925 19 6 1.7444 -9.9823 1.0448 20 7 0.8684 -9.4244 1.8533 21 14 1.6365 -11.8088 0.6679 22 1 0.7743 -12.0185 -0.5228 23 1 2.9964 -12.3388 0.3938 24 1 1.0532 -12.5210 1.8331 25 6 2.4885 -4.9495 -0.0012 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.4497 1.4061 -0.0011 30 1 4.5890 -1.2109 0.0105 31 1 4.5512 -2.7946 -0.9036 32 1 4.5478 -2.7598 0.8804 33 1 5.7561 -4.7444 0.6762 34 1 5.1426 -5.0539 -0.9813 35 1 4.8583 -7.4514 0.4443 36 1 3.7994 -7.1039 -0.9435 37 1 2.1809 -7.4632 1.3430 38 1 0.1671 -9.9617 2.2538 39 1 2.3296 -5.3037 -1.0197 40 1 1.6129 -5.1589 0.6133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480637470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:02 Heat of formation + Delta-G solvation = 24.821937 kcal Electronic energy + Delta-G solvation = -21195.343773 eV Core-core repulsion = 18011.094543 eV Total energy + Delta-G solvation = -3184.249231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38996 -39.40532 -37.26775 -34.59428 -32.37727 -31.63088 -31.09413 -30.25244 -28.53039 -26.69230 -25.30874 -23.67971 -22.08666 -21.60504 -20.76846 -19.86872 -18.48663 -17.72829 -16.94391 -16.19428 -15.81594 -15.19366 -14.83116 -14.50064 -14.05144 -13.86240 -13.49700 -13.38570 -13.23282 -13.01208 -12.87334 -12.67836 -12.47791 -12.33921 -11.95263 -11.67331 -11.46348 -11.15455 -10.80554 -10.54013 -10.49386 -10.32168 -9.96305 -9.62825 -9.56913 -8.97964 -8.81804 -8.48112 -8.16526 -6.86071 -5.69585 -2.98813 1.73017 2.29838 2.93467 3.39225 3.48671 3.53180 3.55216 3.68467 4.60627 4.69087 4.72250 4.80353 4.86052 5.05528 5.09679 5.24384 5.34757 5.45753 5.52049 5.59570 5.65103 5.72984 5.75646 5.82974 5.98195 6.07867 6.09076 6.15518 6.21034 6.41815 6.49249 6.58245 6.64138 6.76838 6.84224 6.91475 7.26050 7.75612 7.85717 8.48737 8.53821 9.59823 10.17680 10.52078 11.53127 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032700 B = 0.003449 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.060743 B = 8116.669266 C = 8831.286506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.102 3.898 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.023 4.023 6 C -0.176 4.176 7 C -0.227 4.227 8 C 0.601 3.399 9 O -0.550 6.550 10 N -0.613 5.613 11 C 0.102 3.898 12 C -0.128 4.128 13 C -0.106 4.106 14 H 0.084 0.916 15 C 0.165 3.835 16 N -0.733 5.733 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.292 1.292 25 C 0.118 3.882 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.069 0.931 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 24.094 -4.094 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.015 4.015 3 N -0.150 5.150 4 H 0.250 0.750 5 C -0.150 4.150 6 C -0.200 4.200 7 C -0.237 4.237 8 C 0.392 3.608 9 O -0.429 6.429 10 N -0.346 5.346 11 C -0.021 4.021 12 C -0.167 4.167 13 C -0.125 4.125 14 H 0.102 0.898 15 C 0.037 3.963 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.208 1.208 24 H -0.218 1.218 25 C -0.004 4.004 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.185 0.815 30 H 0.172 0.828 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.979 23.964 -4.158 25.304 hybrid contribution -0.218 -0.400 0.046 0.457 sum 6.761 23.565 -4.112 24.858 Atomic orbital electron populations 1.20582 0.86979 1.04166 1.03549 1.20339 0.93739 0.85596 1.01873 1.41596 1.06300 1.08293 1.58856 0.74984 1.21752 0.85601 0.96516 1.11176 1.22593 0.96432 0.93631 1.07361 1.20136 0.93254 0.91975 1.18326 1.16985 0.84484 0.83390 0.75979 1.90752 1.16187 1.84096 1.51903 1.48278 1.06261 1.06789 1.73258 1.22297 0.80718 0.97985 1.01097 1.22710 0.98225 0.93485 1.02242 1.22582 0.93428 0.95802 1.00704 0.89777 1.20585 0.92719 0.87204 0.95783 1.42378 1.32856 1.06250 1.56272 1.19215 1.10222 0.84857 1.22865 0.91185 1.24751 0.98116 0.98132 0.99988 1.69669 1.18374 1.35014 1.34956 0.86192 0.77452 0.85343 0.77207 1.21739 1.20803 1.21820 1.22286 0.98888 0.77725 1.01488 0.90409 0.92012 0.87881 0.81502 0.82781 0.91427 0.91297 0.90091 0.90404 0.95880 0.96065 0.78174 0.93508 0.91287 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.88 36.01 0.36 -0.62 16 2 C 0.10 1.17 7.17 -81.89 -0.59 0.58 16 3 N -0.55 -4.42 5.90 -9.11 -0.05 -4.47 16 4 H 0.41 1.83 8.96 -40.82 -0.37 1.46 16 5 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 6 C -0.18 -1.86 9.39 -37.50 -0.35 -2.21 16 7 C -0.23 -3.12 6.23 -103.35 -0.64 -3.77 16 8 C 0.60 10.29 7.84 -12.59 -0.10 10.19 16 9 O -0.55 -11.15 15.07 5.26 0.08 -11.07 16 10 N -0.61 -9.72 3.33 -171.81 -0.57 -10.29 16 11 C 0.10 1.21 5.00 -3.04 -0.02 1.19 16 12 C -0.13 -1.55 6.42 -24.87 -0.16 -1.71 16 13 C -0.11 -1.73 3.07 -88.46 -0.27 -2.01 16 14 H 0.08 1.45 8.14 -51.92 -0.42 1.02 16 15 C 0.17 3.31 5.71 -4.04 -0.02 3.28 16 16 N -0.73 -18.93 5.50 -59.91 -0.33 -19.26 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 21 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 C 0.12 2.11 6.23 -2.52 -0.02 2.09 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 1.33 6.47 -51.93 -0.34 1.00 16 29 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.15 1.37 4.79 -52.49 -0.25 1.11 16 31 H 0.07 0.69 7.03 -51.93 -0.36 0.33 16 32 H 0.07 0.73 6.81 -51.93 -0.35 0.37 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.89 8.04 -51.92 -0.42 0.47 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.43 8.03 -51.93 -0.42 0.01 16 37 H 0.38 10.54 7.63 -40.82 -0.31 10.23 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.07 1.28 7.96 -51.93 -0.41 0.87 16 40 H 0.08 1.71 8.04 -51.93 -0.42 1.29 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -35.41 326.71 -8.24 -43.65 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.73 Total: 7.79 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.26 Total: -0.87 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.23 Total: -62.24 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.41 -8.24 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480637470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.472 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds