Wall clock time and date at job start Mon Mar 30 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34652 * 125.79831 * 2 1 4 4 H 0.97001 * 124.85441 * 0.02562 * 3 2 1 5 5 C 1.36450 * 110.29712 * 180.02562 * 3 2 1 6 6 C 1.34489 * 108.85728 * 359.71401 * 5 3 2 7 7 C 1.36769 * 125.80136 * 180.02562 * 2 1 3 8 8 C 1.47262 * 126.94224 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00088 * 359.97438 * 8 7 2 10 10 N 1.34779 * 119.99792 * 180.02562 * 8 7 2 11 11 C 1.47023 * 125.64916 * 359.95410 * 10 8 7 12 12 C 1.54368 * 107.28806 * 178.94496 * 11 10 8 13 13 C 1.55153 * 102.92223 * 337.86602 * 12 11 10 14 14 H 1.09011 * 111.00187 * 277.35854 * 13 12 11 15 15 C 1.53001 * 111.01013 * 153.54913 * 13 12 11 16 16 N 1.46496 * 109.47205 * 178.17855 * 15 13 12 17 17 C 1.36945 * 119.99718 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47423 * 125.64888 * 180.02562 * 10 8 7 26 26 H 1.08994 * 109.47464 * 269.97406 * 1 2 3 27 27 H 1.08997 * 109.46855 * 29.98147 * 1 2 3 28 28 H 1.09005 * 109.47059 * 149.97597 * 1 2 3 29 29 H 1.08002 * 125.57232 * 179.97438 * 5 3 2 30 30 H 1.07995 * 126.83946 * 180.26032 * 6 5 3 31 31 H 1.09003 * 109.88176 * 298.39877 * 11 10 8 32 32 H 1.08997 * 109.88043 * 59.40528 * 11 10 8 33 33 H 1.09002 * 110.75858 * 219.49035 * 12 11 10 34 34 H 1.09009 * 110.70229 * 96.20587 * 12 11 10 35 35 H 1.08997 * 109.46922 * 58.16897 * 15 13 12 36 36 H 1.09000 * 109.46483 * 298.17716 * 15 13 12 37 37 H 0.96996 * 120.00499 * 359.97438 * 16 15 13 38 38 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 39 39 H 1.08997 * 110.36616 * 85.24815 * 25 10 8 40 40 H 1.09004 * 110.45952 * 322.97659 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2946 1.0921 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0006 6 6 3.6882 -0.6151 0.0054 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5156 -0.0006 9 8 0.6840 -2.7839 0.0003 10 7 2.7850 -3.5054 -0.0006 11 6 4.2440 -3.3237 -0.0014 12 6 4.8813 -4.7295 0.0260 13 6 3.7477 -5.6130 0.6105 14 1 3.7299 -5.5562 1.6990 15 6 3.8857 -7.0630 0.1423 16 7 2.8264 -7.8744 0.7471 17 6 2.7477 -9.2134 0.4713 18 1 3.4662 -9.6712 -0.1925 19 6 1.7444 -9.9823 1.0448 20 7 0.8684 -9.4244 1.8533 21 14 1.6365 -11.8088 0.6679 22 1 0.7743 -12.0185 -0.5228 23 1 2.9964 -12.3388 0.3938 24 1 1.0532 -12.5210 1.8331 25 6 2.4885 -4.9495 -0.0012 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.4497 1.4061 -0.0011 30 1 4.5890 -1.2109 0.0105 31 1 4.5512 -2.7946 -0.9036 32 1 4.5478 -2.7598 0.8804 33 1 5.7561 -4.7444 0.6762 34 1 5.1426 -5.0539 -0.9813 35 1 4.8583 -7.4514 0.4443 36 1 3.7994 -7.1039 -0.9435 37 1 2.1809 -7.4632 1.3430 38 1 0.1671 -9.9617 2.2538 39 1 2.3296 -5.3037 -1.0197 40 1 1.6129 -5.1589 0.6133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480637470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:01 Heat of formation + Delta-G solvation = -0.593333 kcal Electronic energy + Delta-G solvation = -21196.445862 eV Core-core repulsion = 18011.094543 eV Total energy + Delta-G solvation = -3185.351319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.20227 -40.60904 -38.62186 -36.42756 -34.00971 -32.48795 -32.32816 -31.60197 -29.90886 -27.73631 -26.81375 -25.22700 -23.63903 -22.61932 -21.61185 -21.25720 -19.62964 -19.01510 -18.45480 -17.40420 -17.07856 -16.56763 -16.30038 -15.73605 -15.29506 -15.18299 -15.13072 -14.55691 -14.54044 -14.11970 -13.96779 -13.73828 -13.62273 -13.43420 -13.33205 -13.07204 -12.79424 -12.68424 -12.45071 -12.16372 -12.09679 -11.80346 -11.59400 -11.53502 -10.95437 -10.86767 -9.82928 -9.60957 -9.04940 -8.99388 -7.93643 -5.23411 0.73808 1.47141 1.50080 1.58356 1.59046 2.01391 2.46324 2.54652 2.57039 3.39127 3.49647 3.69216 3.91132 3.93698 4.04227 4.22986 4.29083 4.33045 4.36222 4.49581 4.61848 4.66563 4.68961 4.73355 4.84864 4.90560 4.95987 5.02539 5.07173 5.11537 5.23542 5.28156 5.38414 5.45918 5.51150 5.81771 6.02112 6.27829 6.63202 6.72638 7.28039 7.33506 8.10037 8.31924 9.30214 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032700 B = 0.003449 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.060743 B = 8116.669266 C = 8831.286506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.095 3.905 3 N -0.536 5.536 4 H 0.433 0.567 5 C 0.000 4.000 6 C -0.195 4.195 7 C -0.266 4.266 8 C 0.586 3.414 9 O -0.602 6.602 10 N -0.615 5.615 11 C 0.101 3.899 12 C -0.114 4.114 13 C -0.096 4.096 14 H 0.074 0.926 15 C 0.164 3.836 16 N -0.749 5.749 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.977 3.023 22 H -0.289 1.289 23 H -0.265 1.265 24 H -0.296 1.296 25 C 0.122 3.878 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.213 0.787 30 H 0.170 0.830 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.025 0.975 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.055 0.945 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.744 26.312 -4.872 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.127 4.127 6 C -0.218 4.218 7 C -0.276 4.276 8 C 0.380 3.620 9 O -0.485 6.485 10 N -0.348 5.348 11 C -0.020 4.020 12 C -0.152 4.152 13 C -0.116 4.116 14 H 0.093 0.907 15 C 0.038 3.962 16 N -0.392 5.392 17 C -0.376 4.376 18 H 0.098 0.902 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.806 3.194 22 H -0.216 1.216 23 H -0.189 1.189 24 H -0.223 1.223 25 C -0.001 4.001 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.188 0.812 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.202 0.798 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.173 26.230 -4.966 28.569 hybrid contribution -1.155 -0.974 0.252 1.532 sum 9.018 25.256 -4.714 27.229 Atomic orbital electron populations 1.20511 0.86956 1.04097 1.03499 1.20395 0.94156 0.86297 1.01587 1.41601 1.06142 1.08476 1.57113 0.72646 1.22422 0.86279 0.96299 1.07738 1.22802 0.95275 0.94952 1.08750 1.20107 0.95841 0.90304 1.21391 1.17729 0.84026 0.85119 0.75145 1.90709 1.18361 1.85085 1.54371 1.48375 1.08209 1.05375 1.72793 1.22577 0.77860 0.98333 1.03253 1.22739 0.97256 0.91980 1.03191 1.22405 0.94760 0.94332 1.00106 0.90709 1.20768 0.91391 0.88571 0.95502 1.42655 1.33994 1.06174 1.56368 1.19688 1.09830 0.86144 1.21952 0.90172 1.25649 0.98226 1.02846 1.00522 1.69852 1.19285 1.36556 1.36691 0.85088 0.78016 0.79807 0.76536 1.21596 1.18925 1.22281 1.22018 0.98284 0.80000 0.99811 0.90457 0.88649 0.91311 0.77075 0.81235 0.88957 0.89332 0.87024 0.89208 0.94500 0.95755 0.79761 0.94110 0.92677 0.94318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 9.88 71.24 0.70 -1.23 16 2 C 0.10 2.08 7.17 41.78 0.30 2.38 16 3 N -0.54 -6.71 5.90 -182.72 -1.08 -7.79 16 4 H 0.43 2.07 8.96 -92.71 -0.83 1.24 16 5 C 0.00 0.00 11.89 83.12 0.99 0.99 16 6 C -0.19 -3.51 9.39 23.62 0.22 -3.29 16 7 C -0.27 -7.20 6.23 -19.04 -0.12 -7.32 16 8 C 0.59 21.09 7.84 86.62 0.68 21.77 16 9 O -0.60 -26.65 15.07 -4.11 -0.06 -26.71 16 10 N -0.62 -19.98 3.33 -815.72 -2.71 -22.70 16 11 C 0.10 2.16 5.00 86.74 0.43 2.59 16 12 C -0.11 -2.43 6.42 31.80 0.20 -2.22 16 13 C -0.10 -3.17 3.07 -9.40 -0.03 -3.20 16 14 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 15 C 0.16 6.55 5.71 86.38 0.49 7.05 16 16 N -0.75 -39.76 5.50 -343.47 -1.89 -41.65 16 17 C -0.24 -14.09 9.99 84.03 0.84 -13.25 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 20 N -0.97 -62.56 13.06 21.65 0.28 -62.28 16 21 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 C 0.12 4.64 6.23 86.86 0.54 5.18 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.94 6.47 -2.38 -0.02 1.92 16 29 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 30 H 0.17 2.34 4.79 -2.91 -0.01 2.32 16 31 H 0.09 1.57 7.03 -2.39 -0.02 1.56 16 32 H 0.09 1.59 6.81 -2.39 -0.02 1.57 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.75 8.04 -2.38 -0.02 1.73 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.02 0.97 8.03 -2.39 -0.02 0.95 16 37 H 0.37 21.41 7.63 -92.71 -0.71 20.70 16 38 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.05 2.19 7.96 -2.39 -0.02 2.17 16 40 H 0.04 1.77 8.04 -2.38 -0.02 1.75 16 Total: -1.00 -82.40 326.71 1.82 -80.58 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.47 Total: 25.79 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.72 Total: 5.10 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -5.40 Total: -134.42 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -82.40 1.82 -80.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480637470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.983 kcal (2) G-P(sol) polarization free energy of solvation -82.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds