Wall clock time and date at job start Mon Mar 30 2020 01:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34662 * 125.79756 * 2 1 4 4 H 0.96995 * 124.85549 * 0.04897 * 3 2 1 5 5 C 1.36454 * 110.29487 * 179.80504 * 3 2 1 6 6 C 1.34482 * 108.85677 * 0.37816 * 5 3 2 7 7 C 1.36765 * 125.80456 * 180.02562 * 2 1 3 8 8 C 1.47266 * 126.94251 * 359.96941 * 7 2 1 9 9 O 1.21633 * 119.99684 * 0.02562 * 8 7 2 10 10 N 1.34777 * 119.99934 * 180.02562 * 8 7 2 11 11 C 1.47022 * 125.64854 * 359.68740 * 10 8 7 12 12 C 1.54316 * 107.27461 * 180.96896 * 11 10 8 13 13 C 1.55167 * 102.85999 * 22.52969 * 12 11 10 14 14 H 1.08994 * 111.03917 * 82.39027 * 13 12 11 15 15 C 1.53003 * 110.99763 * 206.22690 * 13 12 11 16 16 N 1.46503 * 109.46558 * 178.64714 * 15 13 12 17 17 C 1.36942 * 119.99806 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99933 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99636 * 180.02562 * 17 16 15 20 20 N 1.31610 * 120.00247 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99516 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47248 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46795 * 119.99954 * 21 19 17 24 24 H 1.48502 * 109.46910 * 239.99934 * 21 19 17 25 25 C 1.47424 * 125.64477 * 180.02562 * 10 8 7 26 26 H 1.08997 * 109.47620 * 269.96261 * 1 2 3 27 27 H 1.09004 * 109.47612 * 29.96761 * 1 2 3 28 28 H 1.09000 * 109.47244 * 149.96247 * 1 2 3 29 29 H 1.07995 * 125.57125 * 180.27817 * 5 3 2 30 30 H 1.08002 * 126.83615 * 179.90499 * 6 5 3 31 31 H 1.08991 * 109.88312 * 300.51379 * 11 10 8 32 32 H 1.08993 * 109.87880 * 61.68443 * 11 10 8 33 33 H 1.08994 * 110.92484 * 264.11697 * 12 11 10 34 34 H 1.08999 * 110.74187 * 140.85167 * 12 11 10 35 35 H 1.08992 * 109.47385 * 298.64749 * 15 13 12 36 36 H 1.08993 * 109.47177 * 58.65446 * 15 13 12 37 37 H 0.96996 * 120.00072 * 0.02562 * 16 15 13 38 38 H 0.97000 * 120.00355 * 179.97438 * 20 19 17 39 39 H 1.09003 * 110.36730 * 274.66771 * 25 10 8 40 40 H 1.08997 * 110.36851 * 36.87948 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2946 1.0922 0.0000 4 1 1.9733 2.0074 0.0007 5 6 3.6095 0.7275 0.0044 6 6 3.6882 -0.6150 -0.0012 7 6 2.3070 -1.1092 -0.0005 8 6 1.8703 -2.5156 -0.0005 9 8 0.6839 -2.7839 -0.0005 10 7 2.7851 -3.5053 -0.0005 11 6 4.2440 -3.3236 -0.0070 12 6 4.8807 -4.7291 -0.0293 13 6 3.7469 -5.6127 -0.6136 14 1 3.7278 -5.5556 -1.7019 15 6 3.8856 -7.0629 -0.1458 16 7 2.7825 -7.8589 -0.6896 17 6 2.6968 -9.1954 -0.4040 18 1 3.4423 -9.6626 0.2224 19 6 1.6519 -9.9498 -0.9198 20 7 0.7437 -9.3806 -1.6836 21 14 1.5347 -11.7728 -0.5295 22 1 2.6696 -12.1661 0.3437 23 1 0.2540 -12.0480 0.1700 24 1 1.5870 -12.5535 -1.7917 25 6 2.4885 -4.9494 -0.0010 26 1 -0.3634 -0.0007 1.0276 27 1 -0.3634 0.8903 -0.5133 28 1 -0.3634 -0.8896 -0.5144 29 1 4.4496 1.4061 0.0096 30 1 4.5890 -1.2108 -0.0011 31 1 4.5440 -2.7647 -0.8933 32 1 4.5553 -2.7920 0.8921 33 1 5.1426 -5.0539 0.9777 34 1 5.7562 -4.7461 -0.6785 35 1 4.8342 -7.4688 -0.4970 36 1 3.8564 -7.0977 0.9431 37 1 2.1132 -7.4394 -1.2526 38 1 0.0137 -9.9078 -2.0442 39 1 2.3303 -5.3046 1.0173 40 1 1.6117 -5.1564 -0.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480637474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:04 Heat of formation + Delta-G solvation = 24.759207 kcal Electronic energy + Delta-G solvation = -21210.117399 eV Core-core repulsion = 18025.865449 eV Total energy + Delta-G solvation = -3184.251951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38573 -39.40433 -37.26595 -34.59421 -32.37454 -31.62750 -31.09087 -30.25592 -28.51879 -26.69073 -25.31123 -23.68255 -22.09269 -21.60261 -20.76413 -19.84711 -18.48429 -17.72706 -16.94736 -16.19323 -15.80926 -15.22276 -14.78056 -14.49058 -14.08113 -13.86692 -13.50608 -13.36095 -13.23839 -13.02409 -12.85525 -12.67380 -12.46594 -12.35559 -11.91006 -11.68618 -11.46631 -11.16157 -10.81725 -10.53760 -10.49022 -10.32026 -9.93425 -9.62948 -9.56412 -8.97638 -8.82468 -8.47676 -8.15973 -6.86138 -5.69720 -2.98893 1.73402 2.30146 2.93811 3.39729 3.48273 3.53292 3.55982 3.69032 4.60459 4.69487 4.72564 4.80466 4.86369 5.06075 5.09728 5.24719 5.35135 5.46280 5.51694 5.59941 5.65212 5.73290 5.75823 5.83432 5.98323 6.08083 6.09263 6.16169 6.21166 6.42395 6.49993 6.58698 6.64600 6.76394 6.84585 6.91593 7.26384 7.76113 7.86317 8.48494 8.54470 9.59732 10.17568 10.51987 11.53052 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032343 B = 0.003477 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.512044 B = 8052.018591 C = 8786.971382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.102 3.898 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.023 4.023 6 C -0.176 4.176 7 C -0.227 4.227 8 C 0.600 3.400 9 O -0.550 6.550 10 N -0.613 5.613 11 C 0.102 3.898 12 C -0.128 4.128 13 C -0.106 4.106 14 H 0.083 0.917 15 C 0.165 3.835 16 N -0.733 5.733 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.118 3.882 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.069 0.931 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.962 23.995 3.644 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.015 4.015 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.150 4.150 6 C -0.200 4.200 7 C -0.237 4.237 8 C 0.391 3.609 9 O -0.429 6.429 10 N -0.346 5.346 11 C -0.021 4.021 12 C -0.167 4.167 13 C -0.125 4.125 14 H 0.102 0.898 15 C 0.037 3.963 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.004 4.004 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.185 0.815 30 H 0.172 0.828 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.308 23.867 3.720 25.236 hybrid contribution -0.234 -0.397 -0.009 0.461 sum 7.073 23.470 3.710 24.792 Atomic orbital electron populations 1.20582 0.86980 1.04238 1.03485 1.20338 0.93738 0.85593 1.01875 1.41599 1.06299 1.08291 1.58869 0.74988 1.21749 0.85601 0.96515 1.11179 1.22591 0.96431 0.93630 1.07368 1.20137 0.93252 0.91979 1.18307 1.16988 0.84489 0.83388 0.75991 1.90756 1.16177 1.84094 1.51884 1.48282 1.06250 1.06806 1.73262 1.22279 0.80737 0.97972 1.01083 1.22703 0.98202 0.93514 1.02267 1.22574 0.93482 0.95823 1.00653 0.89826 1.20587 0.92261 0.87339 0.96108 1.42386 1.28260 1.06791 1.60340 1.19261 1.07518 0.85155 1.25171 0.91130 1.24753 0.97717 0.98149 1.00389 1.69671 1.15273 1.35049 1.37972 0.86125 0.77313 0.85428 0.77368 1.20583 1.21889 1.21925 1.22270 0.98841 0.77687 1.01557 0.90468 0.91988 0.87840 0.81508 0.82787 0.91294 0.91410 0.90382 0.90122 0.95883 0.96061 0.78168 0.93553 0.91239 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.88 36.00 0.36 -0.63 16 2 C 0.10 1.17 7.17 -81.89 -0.59 0.59 16 3 N -0.55 -4.43 5.90 -9.11 -0.05 -4.49 16 4 H 0.41 1.84 8.96 -40.82 -0.37 1.47 16 5 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 6 C -0.18 -1.86 9.39 -37.50 -0.35 -2.21 16 7 C -0.23 -3.13 6.23 -103.35 -0.64 -3.77 16 8 C 0.60 10.32 7.84 -12.59 -0.10 10.22 16 9 O -0.55 -11.20 15.07 5.25 0.08 -11.12 16 10 N -0.61 -9.76 3.33 -171.87 -0.57 -10.33 16 11 C 0.10 1.21 4.98 -3.07 -0.02 1.20 16 12 C -0.13 -1.55 6.42 -24.89 -0.16 -1.71 16 13 C -0.11 -1.74 3.10 -88.48 -0.27 -2.01 16 14 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.17 3.30 5.71 -4.04 -0.02 3.28 16 16 N -0.73 -18.93 5.45 -59.91 -0.33 -19.26 16 17 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.94 13.06 55.49 0.72 -28.21 16 21 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 C 0.12 2.13 6.08 -2.54 -0.02 2.11 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 1.36 6.47 -51.93 -0.34 1.02 16 29 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.15 1.37 4.80 -52.49 -0.25 1.11 16 31 H 0.07 0.73 6.87 -51.93 -0.36 0.37 16 32 H 0.07 0.70 6.98 -51.93 -0.36 0.33 16 33 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 37 H 0.38 10.54 7.53 -40.82 -0.31 10.23 16 38 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 39 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 40 H 0.08 1.72 8.03 -51.93 -0.42 1.30 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -35.44 326.56 -8.25 -43.69 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.73 Total: 7.80 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.26 Total: -0.83 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.23 Total: -62.29 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.44 -8.25 -43.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480637474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.448 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds