Wall clock time and date at job start Mon Mar 30 2020 01:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34662 * 125.79756 * 2 1 4 4 H 0.96995 * 124.85549 * 0.04897 * 3 2 1 5 5 C 1.36454 * 110.29487 * 179.80504 * 3 2 1 6 6 C 1.34482 * 108.85677 * 0.37816 * 5 3 2 7 7 C 1.36765 * 125.80456 * 180.02562 * 2 1 3 8 8 C 1.47266 * 126.94251 * 359.96941 * 7 2 1 9 9 O 1.21633 * 119.99684 * 0.02562 * 8 7 2 10 10 N 1.34777 * 119.99934 * 180.02562 * 8 7 2 11 11 C 1.47022 * 125.64854 * 359.68740 * 10 8 7 12 12 C 1.54316 * 107.27461 * 180.96896 * 11 10 8 13 13 C 1.55167 * 102.85999 * 22.52969 * 12 11 10 14 14 H 1.08994 * 111.03917 * 82.39027 * 13 12 11 15 15 C 1.53003 * 110.99763 * 206.22690 * 13 12 11 16 16 N 1.46503 * 109.46558 * 178.64714 * 15 13 12 17 17 C 1.36942 * 119.99806 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99933 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99636 * 180.02562 * 17 16 15 20 20 N 1.31610 * 120.00247 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99516 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47248 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46795 * 119.99954 * 21 19 17 24 24 H 1.48502 * 109.46910 * 239.99934 * 21 19 17 25 25 C 1.47424 * 125.64477 * 180.02562 * 10 8 7 26 26 H 1.08997 * 109.47620 * 269.96261 * 1 2 3 27 27 H 1.09004 * 109.47612 * 29.96761 * 1 2 3 28 28 H 1.09000 * 109.47244 * 149.96247 * 1 2 3 29 29 H 1.07995 * 125.57125 * 180.27817 * 5 3 2 30 30 H 1.08002 * 126.83615 * 179.90499 * 6 5 3 31 31 H 1.08991 * 109.88312 * 300.51379 * 11 10 8 32 32 H 1.08993 * 109.87880 * 61.68443 * 11 10 8 33 33 H 1.08994 * 110.92484 * 264.11697 * 12 11 10 34 34 H 1.08999 * 110.74187 * 140.85167 * 12 11 10 35 35 H 1.08992 * 109.47385 * 298.64749 * 15 13 12 36 36 H 1.08993 * 109.47177 * 58.65446 * 15 13 12 37 37 H 0.96996 * 120.00072 * 0.02562 * 16 15 13 38 38 H 0.97000 * 120.00355 * 179.97438 * 20 19 17 39 39 H 1.09003 * 110.36730 * 274.66771 * 25 10 8 40 40 H 1.08997 * 110.36851 * 36.87948 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2946 1.0922 0.0000 4 1 1.9733 2.0074 0.0007 5 6 3.6095 0.7275 0.0044 6 6 3.6882 -0.6150 -0.0012 7 6 2.3070 -1.1092 -0.0005 8 6 1.8703 -2.5156 -0.0005 9 8 0.6839 -2.7839 -0.0005 10 7 2.7851 -3.5053 -0.0005 11 6 4.2440 -3.3236 -0.0070 12 6 4.8807 -4.7291 -0.0293 13 6 3.7469 -5.6127 -0.6136 14 1 3.7278 -5.5556 -1.7019 15 6 3.8856 -7.0629 -0.1458 16 7 2.7825 -7.8589 -0.6896 17 6 2.6968 -9.1954 -0.4040 18 1 3.4423 -9.6626 0.2224 19 6 1.6519 -9.9498 -0.9198 20 7 0.7437 -9.3806 -1.6836 21 14 1.5347 -11.7728 -0.5295 22 1 2.6696 -12.1661 0.3437 23 1 0.2540 -12.0480 0.1700 24 1 1.5870 -12.5535 -1.7917 25 6 2.4885 -4.9494 -0.0010 26 1 -0.3634 -0.0007 1.0276 27 1 -0.3634 0.8903 -0.5133 28 1 -0.3634 -0.8896 -0.5144 29 1 4.4496 1.4061 0.0096 30 1 4.5890 -1.2108 -0.0011 31 1 4.5440 -2.7647 -0.8933 32 1 4.5553 -2.7920 0.8921 33 1 5.1426 -5.0539 0.9777 34 1 5.7562 -4.7461 -0.6785 35 1 4.8342 -7.4688 -0.4970 36 1 3.8564 -7.0977 0.9431 37 1 2.1132 -7.4394 -1.2526 38 1 0.0137 -9.9078 -2.0442 39 1 2.3303 -5.3046 1.0173 40 1 1.6117 -5.1564 -0.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480637474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:03 Heat of formation + Delta-G solvation = -0.706356 kcal Electronic energy + Delta-G solvation = -21211.221669 eV Core-core repulsion = 18025.865449 eV Total energy + Delta-G solvation = -3185.356220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.20107 -40.61192 -38.62426 -36.42759 -34.01033 -32.48781 -32.32683 -31.60520 -29.90267 -27.73948 -26.81362 -25.23985 -23.63966 -22.61951 -21.60526 -21.24149 -19.63511 -19.01800 -18.45485 -17.40357 -17.07784 -16.57322 -16.31698 -15.69147 -15.32242 -15.19903 -15.12480 -14.56756 -14.53706 -14.11276 -13.94290 -13.77687 -13.62882 -13.43193 -13.28603 -13.08556 -12.80561 -12.71603 -12.44448 -12.11589 -12.10927 -11.79733 -11.59448 -11.53030 -10.96443 -10.87056 -9.82881 -9.60896 -9.04872 -8.99527 -7.93838 -5.23547 0.73863 1.47143 1.49060 1.59086 1.59137 2.01450 2.46476 2.54703 2.56807 3.39286 3.49292 3.69287 3.91577 3.93709 4.04031 4.23430 4.29052 4.33547 4.36235 4.49605 4.61660 4.66388 4.69081 4.73095 4.84710 4.91054 4.96119 5.02729 5.07237 5.12183 5.23086 5.28327 5.38742 5.46003 5.51194 5.81835 6.02161 6.27690 6.63345 6.72767 7.28199 7.33381 8.09893 8.31757 9.30222 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032343 B = 0.003477 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.512044 B = 8052.018591 C = 8786.971382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.095 3.905 3 N -0.536 5.536 4 H 0.433 0.567 5 C 0.000 4.000 6 C -0.195 4.195 7 C -0.266 4.266 8 C 0.586 3.414 9 O -0.602 6.602 10 N -0.616 5.616 11 C 0.101 3.899 12 C -0.114 4.114 13 C -0.097 4.097 14 H 0.075 0.925 15 C 0.164 3.836 16 N -0.750 5.750 17 C -0.243 4.243 18 H 0.081 0.919 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.296 1.296 24 H -0.293 1.293 25 C 0.123 3.877 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.213 0.787 30 H 0.171 0.829 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.037 0.963 36 H 0.025 0.975 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.054 0.946 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 26.223 4.396 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.127 4.127 6 C -0.218 4.218 7 C -0.276 4.276 8 C 0.380 3.620 9 O -0.485 6.485 10 N -0.348 5.348 11 C -0.020 4.020 12 C -0.152 4.152 13 C -0.116 4.116 14 H 0.094 0.906 15 C 0.037 3.963 16 N -0.392 5.392 17 C -0.375 4.375 18 H 0.099 0.901 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.223 1.223 24 H -0.220 1.220 25 C -0.001 4.001 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.188 0.812 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.202 0.798 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.568 26.142 4.499 28.554 hybrid contribution -1.189 -0.975 -0.214 1.553 sum 9.379 25.166 4.284 27.197 Atomic orbital electron populations 1.20509 0.86969 1.04039 1.03550 1.20392 0.94149 0.86301 1.01593 1.41603 1.06143 1.08470 1.57125 0.72649 1.22421 0.86276 0.96298 1.07731 1.22800 0.95265 0.94951 1.08751 1.20106 0.95851 0.90290 1.21385 1.17738 0.84027 0.85130 0.75149 1.90713 1.18372 1.85091 1.54367 1.48379 1.08218 1.05373 1.72790 1.22564 0.77852 0.98345 1.03248 1.22733 0.97260 0.91978 1.03207 1.22403 0.94752 0.94342 1.00118 0.90641 1.20773 0.90751 0.88749 0.95977 1.42665 1.29507 1.06677 1.60369 1.19725 1.07200 0.86419 1.24135 0.90143 1.25650 0.97791 1.02834 1.01007 1.69852 1.16106 1.36647 1.39783 0.85024 0.77423 0.79883 0.77133 1.18586 1.22344 1.21969 1.21994 0.98284 0.79993 0.99791 0.90279 0.88716 0.91433 0.77067 0.81224 0.89302 0.88942 0.89242 0.86968 0.94513 0.95699 0.79758 0.94121 0.92789 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.88 71.23 0.70 -1.24 16 2 C 0.10 2.09 7.17 41.78 0.30 2.39 16 3 N -0.54 -6.74 5.90 -182.73 -1.08 -7.82 16 4 H 0.43 2.09 8.96 -92.71 -0.83 1.26 16 5 C 0.00 0.00 11.89 83.11 0.99 0.99 16 6 C -0.19 -3.51 9.39 23.62 0.22 -3.29 16 7 C -0.27 -7.22 6.23 -19.04 -0.12 -7.34 16 8 C 0.59 21.18 7.84 86.62 0.68 21.86 16 9 O -0.60 -26.81 15.07 -4.14 -0.06 -26.87 16 10 N -0.62 -20.07 3.33 -815.91 -2.71 -22.79 16 11 C 0.10 2.16 4.98 86.73 0.43 2.59 16 12 C -0.11 -2.42 6.42 31.78 0.20 -2.22 16 13 C -0.10 -3.17 3.10 -9.41 -0.03 -3.20 16 14 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 15 C 0.16 6.54 5.71 86.38 0.49 7.03 16 16 N -0.75 -39.78 5.45 -343.45 -1.87 -41.65 16 17 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 20 N -0.97 -62.65 13.06 21.65 0.28 -62.36 16 21 Si 0.98 47.68 29.55 68.60 2.03 49.71 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 25 C 0.12 4.69 6.08 86.85 0.53 5.22 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.94 6.47 -2.39 -0.02 1.92 16 29 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 30 H 0.17 2.34 4.80 -2.91 -0.01 2.32 16 31 H 0.09 1.59 6.87 -2.39 -0.02 1.57 16 32 H 0.09 1.58 6.98 -2.39 -0.02 1.56 16 33 H 0.09 1.75 8.04 -2.39 -0.02 1.73 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 37 H 0.37 21.43 7.53 -92.71 -0.70 20.73 16 38 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.05 2.18 8.00 -2.39 -0.02 2.16 16 40 H 0.04 1.77 8.03 -2.39 -0.02 1.75 16 Total: -1.00 -82.64 326.56 1.83 -80.81 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.46 Total: 25.74 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.71 Total: 5.24 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -5.38 Total: -134.62 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.06 Total: -26.87 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -82.64 1.83 -80.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480637474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.102 kcal (2) G-P(sol) polarization free energy of solvation -82.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds