Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34493 * 126.83403 * 2 1 4 4 N 1.36453 * 108.85252 * 180.25080 * 3 2 1 5 5 H 0.96996 * 124.84299 * 179.73322 * 4 3 2 6 6 C 1.34657 * 110.30020 * 359.75042 * 4 3 2 7 7 C 1.36767 * 108.39493 * 359.97438 * 6 4 3 8 8 C 1.47267 * 126.93830 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00194 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00005 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00169 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47505 * 180.02562 * 11 10 8 13 13 N 1.46503 * 109.47505 * 179.97438 * 12 11 10 14 14 C 1.36931 * 119.99821 * 269.99906 * 13 12 11 15 15 H 1.08004 * 119.99416 * 140.53296 * 14 13 12 16 16 C 1.38806 * 120.00354 * 320.53600 * 14 13 12 17 17 N 1.31617 * 119.99825 * 340.27502 * 16 14 13 18 18 Si 1.86805 * 120.00199 * 160.28027 * 16 14 13 19 19 H 1.48494 * 109.46814 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46962 * 119.99850 * 18 16 14 21 21 H 1.48497 * 109.46771 * 239.99628 * 18 16 14 22 22 C 1.46501 * 119.99690 * 89.99634 * 13 12 11 23 23 C 1.53000 * 117.49508 * 183.29013 * 22 13 12 24 24 C 1.53000 * 117.49644 * 114.66790 * 22 13 12 25 25 H 1.09002 * 109.47249 * 270.14936 * 1 2 3 26 26 H 1.09004 * 109.47297 * 30.14567 * 1 2 3 27 27 H 1.09004 * 109.47186 * 150.14863 * 1 2 3 28 28 H 1.07995 * 125.57091 * 0.04544 * 3 2 1 29 29 H 1.07998 * 125.79839 * 180.02562 * 6 4 3 30 30 H 0.97001 * 120.00041 * 0.02562 * 10 8 7 31 31 H 1.08996 * 109.46924 * 59.99797 * 11 10 8 32 32 H 1.08998 * 109.47027 * 300.00300 * 11 10 8 33 33 H 1.09004 * 109.46858 * 300.00434 * 12 11 10 34 34 H 1.09003 * 109.47169 * 59.99960 * 12 11 10 35 35 H 0.96998 * 120.00092 * 175.02000 * 17 16 14 36 36 H 1.09000 * 115.55270 * 328.99975 * 22 13 12 37 37 H 1.08997 * 117.50156 * 0.02562 * 23 22 13 38 38 H 1.09005 * 117.49684 * 145.02287 * 23 22 13 39 39 H 1.08999 * 117.50129 * 214.97228 * 24 22 13 40 40 H 1.08997 * 117.49861 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3839 1.2413 -0.0105 6 6 3.6656 -0.6903 -0.0039 7 6 2.3864 -1.1740 0.0036 8 6 1.9749 -2.5880 0.0075 9 8 0.7937 -2.8777 0.0138 10 7 2.9073 -3.5612 0.0040 11 6 2.4980 -4.9679 0.0072 12 6 3.7405 -5.8606 0.0029 13 7 3.3312 -7.2673 0.0067 14 6 3.1454 -7.9230 1.1944 15 1 2.3248 -8.6164 1.3057 16 6 4.0114 -7.6964 2.2553 17 7 5.2021 -7.1811 2.0342 18 14 3.4869 -8.1230 3.9967 19 1 2.1121 -8.6840 3.9761 20 1 4.4231 -9.1266 4.5637 21 1 3.5084 -6.8971 4.8344 22 6 3.1208 -7.9723 -1.2601 23 6 2.6198 -9.4163 -1.1901 24 6 4.0678 -9.1275 -1.5914 25 1 -0.3634 0.0027 1.0277 26 1 -0.3634 0.8887 -0.5161 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9868 2.1059 0.0007 29 1 4.5664 -1.2860 -0.0069 30 1 3.8494 -3.3302 -0.0006 31 1 1.8990 -5.1740 -0.8797 32 1 1.9073 -5.1723 0.9002 33 1 4.3316 -5.6562 -0.8899 34 1 4.3392 -5.6544 0.8901 35 1 5.7792 -6.9556 2.7805 36 1 2.7689 -7.3568 -2.0880 37 1 2.4464 -9.8415 -0.2016 38 1 1.9380 -9.7509 -1.9720 39 1 4.3385 -9.2722 -2.6373 40 1 4.8476 -9.3625 -0.8671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481197340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = 50.952902 kcal Electronic energy + Delta-G solvation = -21130.935991 eV Core-core repulsion = 17947.819884 eV Total energy + Delta-G solvation = -3183.116107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14021 -38.59746 -37.02324 -34.60700 -33.14744 -32.37807 -31.00408 -29.81506 -27.31216 -26.51700 -24.45188 -22.78135 -21.54748 -21.18570 -19.80300 -19.75922 -18.99249 -18.31643 -16.40174 -15.79080 -15.39160 -15.15123 -14.90720 -14.45186 -14.17966 -13.90375 -13.72053 -13.39383 -12.89440 -12.62565 -12.59782 -12.50818 -12.27445 -11.88347 -11.50585 -11.33557 -11.02481 -10.73672 -10.67549 -10.28227 -10.10693 -9.80379 -9.59804 -9.42878 -9.23004 -8.67838 -8.50878 -8.33324 -8.25669 -6.57192 -5.82444 -3.49026 1.87902 2.41601 3.15475 3.33637 3.42920 3.46772 3.79236 3.92745 4.44862 4.83787 4.96265 5.01055 5.14892 5.29692 5.34823 5.42509 5.65530 5.84028 5.92983 5.94122 6.06952 6.13814 6.17579 6.26556 6.32761 6.36001 6.53418 6.59209 6.66032 6.82302 6.89071 6.99175 7.03600 7.14281 7.25883 7.37906 7.53242 7.78496 8.12906 8.46850 8.82912 9.11587 9.72147 10.30171 11.12692 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.004235 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.124649 B = 6609.826309 C = 7171.316643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.111 4.111 3 C -0.032 4.032 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.043 3.957 7 C -0.220 4.220 8 C 0.581 3.419 9 O -0.550 6.550 10 N -0.721 5.721 11 C 0.101 3.899 12 C 0.142 3.858 13 N -0.547 5.547 14 C -0.259 4.259 15 H 0.066 0.934 16 C 0.016 3.984 17 N -0.884 5.884 18 Si 0.895 3.105 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.119 3.881 23 C -0.194 4.194 24 C -0.220 4.220 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.393 0.607 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 15.117 -5.276 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C -0.159 4.159 4 N -0.147 5.147 5 H 0.252 0.748 6 C -0.093 4.093 7 C -0.231 4.231 8 C 0.368 3.632 9 O -0.429 6.429 10 N -0.371 5.371 11 C -0.024 4.024 12 C 0.015 3.985 13 N -0.264 5.264 14 C -0.388 4.388 15 H 0.083 0.917 16 C -0.185 4.185 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.011 3.989 23 C -0.233 4.233 24 C -0.260 4.260 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.184 0.816 29 H 0.190 0.810 30 H 0.226 0.774 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.119 14.960 -5.139 15.858 hybrid contribution 0.814 0.141 0.963 1.269 sum -0.304 15.100 -4.176 15.670 Atomic orbital electron populations 1.20182 0.89455 1.02429 1.01909 1.20577 0.95637 0.90472 1.05075 1.21527 0.82544 0.99050 1.12828 1.41455 1.08166 1.06690 1.58366 0.74845 1.21976 0.98752 0.83745 1.04783 1.20562 0.92574 0.93280 1.16668 1.17419 0.85645 0.83898 0.76223 1.90718 1.17323 1.83803 1.51041 1.45929 1.09049 1.07145 1.74993 1.22266 1.00723 0.78079 1.01331 1.21003 0.92616 0.82811 1.02091 1.43176 1.78216 1.05046 0.99996 1.19095 1.07051 1.23896 0.88801 0.91660 1.25227 0.93755 1.00062 0.99440 1.70063 1.06498 1.45687 1.30333 0.86349 0.78473 0.77885 0.84868 1.19849 1.21572 1.21329 1.21245 1.00332 0.87051 0.90312 1.23018 0.96730 1.01406 1.02105 1.23338 0.93660 1.09533 0.99514 0.91921 0.92651 0.90216 0.81648 0.81010 0.77409 0.93186 0.91669 0.95032 0.88433 0.93628 0.89530 0.88431 0.90763 0.91280 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.97 36.00 0.36 -0.70 16 2 C -0.11 -1.49 6.35 -102.54 -0.65 -2.15 16 3 C -0.03 -0.32 11.82 -16.82 -0.20 -0.52 16 4 N -0.55 -4.67 5.90 -12.85 -0.08 -4.75 16 5 H 0.42 1.93 8.96 -40.82 -0.37 1.56 16 6 C 0.04 0.47 11.40 -16.84 -0.19 0.28 16 7 C -0.22 -3.27 6.29 -103.35 -0.65 -3.92 16 8 C 0.58 10.65 7.81 -12.59 -0.10 10.56 16 9 O -0.55 -12.04 15.32 5.25 0.08 -11.96 16 10 N -0.72 -12.52 5.55 -61.44 -0.34 -12.86 16 11 C 0.10 2.08 6.00 -4.04 -0.02 2.06 16 12 C 0.14 3.13 5.45 -4.04 -0.02 3.11 16 13 N -0.55 -13.27 2.75 -165.66 -0.46 -13.73 16 14 C -0.26 -6.87 8.47 -15.06 -0.13 -7.00 16 15 H 0.07 1.76 6.74 -52.48 -0.35 1.41 16 16 C 0.02 0.42 4.98 -17.43 -0.09 0.34 16 17 N -0.88 -24.36 11.50 55.49 0.64 -23.72 16 18 Si 0.90 21.33 29.60 -169.99 -5.03 16.30 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.12 2.56 6.56 -67.93 -0.45 2.12 16 23 C -0.19 -3.88 9.80 -26.73 -0.26 -4.14 16 24 C -0.22 -4.49 10.36 -26.73 -0.28 -4.76 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.22 6.86 -51.93 -0.36 0.86 16 28 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.17 1.39 7.45 -52.49 -0.39 1.00 16 30 H 0.39 5.66 7.42 -40.82 -0.30 5.36 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.10 2.40 5.59 -51.93 -0.29 2.11 16 35 H 0.25 6.74 8.32 -40.82 -0.34 6.40 16 36 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.10 2.12 6.46 -51.93 -0.34 1.79 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -32.63 336.27 -8.55 -41.18 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.76 Total: 9.19 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.68 Total: -4.73 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.23 Total: -55.06 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.63 -8.55 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481197340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.134 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds