Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34493 * 126.83403 * 2 1 4 4 N 1.36453 * 108.85252 * 180.25080 * 3 2 1 5 5 H 0.96996 * 124.84299 * 179.73322 * 4 3 2 6 6 C 1.34657 * 110.30020 * 359.75042 * 4 3 2 7 7 C 1.36767 * 108.39493 * 359.97438 * 6 4 3 8 8 C 1.47267 * 126.93830 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00194 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00005 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00169 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47505 * 180.02562 * 11 10 8 13 13 N 1.46503 * 109.47505 * 179.97438 * 12 11 10 14 14 C 1.36931 * 119.99821 * 269.99906 * 13 12 11 15 15 H 1.08004 * 119.99416 * 140.53296 * 14 13 12 16 16 C 1.38806 * 120.00354 * 320.53600 * 14 13 12 17 17 N 1.31617 * 119.99825 * 340.27502 * 16 14 13 18 18 Si 1.86805 * 120.00199 * 160.28027 * 16 14 13 19 19 H 1.48494 * 109.46814 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46962 * 119.99850 * 18 16 14 21 21 H 1.48497 * 109.46771 * 239.99628 * 18 16 14 22 22 C 1.46501 * 119.99690 * 89.99634 * 13 12 11 23 23 C 1.53000 * 117.49508 * 183.29013 * 22 13 12 24 24 C 1.53000 * 117.49644 * 114.66790 * 22 13 12 25 25 H 1.09002 * 109.47249 * 270.14936 * 1 2 3 26 26 H 1.09004 * 109.47297 * 30.14567 * 1 2 3 27 27 H 1.09004 * 109.47186 * 150.14863 * 1 2 3 28 28 H 1.07995 * 125.57091 * 0.04544 * 3 2 1 29 29 H 1.07998 * 125.79839 * 180.02562 * 6 4 3 30 30 H 0.97001 * 120.00041 * 0.02562 * 10 8 7 31 31 H 1.08996 * 109.46924 * 59.99797 * 11 10 8 32 32 H 1.08998 * 109.47027 * 300.00300 * 11 10 8 33 33 H 1.09004 * 109.46858 * 300.00434 * 12 11 10 34 34 H 1.09003 * 109.47169 * 59.99960 * 12 11 10 35 35 H 0.96998 * 120.00092 * 175.02000 * 17 16 14 36 36 H 1.09000 * 115.55270 * 328.99975 * 22 13 12 37 37 H 1.08997 * 117.50156 * 0.02562 * 23 22 13 38 38 H 1.09005 * 117.49684 * 145.02287 * 23 22 13 39 39 H 1.08999 * 117.50129 * 214.97228 * 24 22 13 40 40 H 1.08997 * 117.49861 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3839 1.2413 -0.0105 6 6 3.6656 -0.6903 -0.0039 7 6 2.3864 -1.1740 0.0036 8 6 1.9749 -2.5880 0.0075 9 8 0.7937 -2.8777 0.0138 10 7 2.9073 -3.5612 0.0040 11 6 2.4980 -4.9679 0.0072 12 6 3.7405 -5.8606 0.0029 13 7 3.3312 -7.2673 0.0067 14 6 3.1454 -7.9230 1.1944 15 1 2.3248 -8.6164 1.3057 16 6 4.0114 -7.6964 2.2553 17 7 5.2021 -7.1811 2.0342 18 14 3.4869 -8.1230 3.9967 19 1 2.1121 -8.6840 3.9761 20 1 4.4231 -9.1266 4.5637 21 1 3.5084 -6.8971 4.8344 22 6 3.1208 -7.9723 -1.2601 23 6 2.6198 -9.4163 -1.1901 24 6 4.0678 -9.1275 -1.5914 25 1 -0.3634 0.0027 1.0277 26 1 -0.3634 0.8887 -0.5161 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9868 2.1059 0.0007 29 1 4.5664 -1.2860 -0.0069 30 1 3.8494 -3.3302 -0.0006 31 1 1.8990 -5.1740 -0.8797 32 1 1.9073 -5.1723 0.9002 33 1 4.3316 -5.6562 -0.8899 34 1 4.3392 -5.6544 0.8901 35 1 5.7792 -6.9556 2.7805 36 1 2.7689 -7.3568 -2.0880 37 1 2.4464 -9.8415 -0.2016 38 1 1.9380 -9.7509 -1.9720 39 1 4.3385 -9.2722 -2.6373 40 1 4.8476 -9.3625 -0.8671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481197340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = 29.311915 kcal Electronic energy + Delta-G solvation = -21131.874415 eV Core-core repulsion = 17947.819884 eV Total energy + Delta-G solvation = -3184.054531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03830 -40.03712 -38.76683 -36.22667 -34.94059 -33.30278 -32.79095 -31.05087 -28.94760 -27.41612 -26.31825 -24.16357 -23.12077 -22.78993 -21.57186 -20.84643 -20.17179 -19.16302 -18.20613 -17.33512 -17.04624 -16.77214 -16.32040 -16.09017 -15.69504 -15.13832 -14.83766 -14.51124 -14.42148 -14.20409 -13.91871 -13.74369 -13.56426 -13.24818 -13.24050 -12.93232 -12.63809 -12.48138 -12.28305 -12.11275 -11.92475 -11.64794 -11.34930 -10.97143 -10.81087 -10.51174 -10.04246 -9.48529 -9.14457 -8.52939 -7.82690 -5.53597 0.83016 1.41368 1.46247 1.53261 1.55276 2.27591 2.46812 2.56052 2.63701 3.15305 3.41259 3.60078 4.03435 4.11130 4.31226 4.33673 4.38624 4.40567 4.49835 4.55716 4.63427 4.74900 4.84915 4.92548 4.95300 4.95907 5.05546 5.18029 5.24967 5.33374 5.38142 5.54002 5.56927 5.67816 5.74788 5.86477 5.99411 6.45299 6.71929 6.80617 7.13237 7.44671 7.79650 8.31928 9.07832 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.004235 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.124649 B = 6609.826309 C = 7171.316643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.154 4.154 3 C -0.006 4.006 4 N -0.531 5.531 5 H 0.439 0.561 6 C 0.068 3.932 7 C -0.270 4.270 8 C 0.576 3.424 9 O -0.598 6.598 10 N -0.712 5.712 11 C 0.124 3.876 12 C 0.151 3.849 13 N -0.565 5.565 14 C -0.265 4.265 15 H 0.055 0.945 16 C -0.025 4.025 17 N -0.907 5.907 18 Si 0.947 3.053 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.098 3.902 23 C -0.184 4.184 24 C -0.209 4.209 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.206 0.794 29 H 0.201 0.799 30 H 0.409 0.591 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.253 0.747 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 17.123 -6.206 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.160 4.160 3 C -0.134 4.134 4 N -0.127 5.127 5 H 0.279 0.721 6 C -0.071 4.071 7 C -0.281 4.281 8 C 0.366 3.634 9 O -0.481 6.481 10 N -0.364 5.364 11 C -0.003 4.003 12 C 0.025 3.975 13 N -0.283 5.283 14 C -0.395 4.395 15 H 0.072 0.928 16 C -0.223 4.223 17 N -0.550 5.550 18 Si 0.775 3.225 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.215 1.215 22 C -0.010 4.010 23 C -0.222 4.222 24 C -0.250 4.250 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.223 0.777 29 H 0.218 0.782 30 H 0.245 0.755 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.005 16.998 -6.083 18.054 hybrid contribution 0.500 -0.426 1.196 1.365 sum 0.494 16.573 -4.887 17.285 Atomic orbital electron populations 1.20095 0.90012 1.02049 1.01386 1.20821 0.96023 0.91329 1.07799 1.21992 0.82251 0.99741 1.09461 1.41511 1.08836 1.06174 1.56142 0.72050 1.22271 0.98098 0.84877 1.01837 1.20431 0.95035 0.91498 1.21116 1.18042 0.84951 0.85490 0.74912 1.90681 1.19301 1.84744 1.53358 1.45732 1.09970 1.05721 1.74945 1.21760 0.99435 0.79880 0.99205 1.20857 0.92746 0.82313 1.01617 1.43369 1.78514 1.05964 1.00453 1.19178 1.06525 1.23618 0.90209 0.92790 1.25767 0.93901 1.00636 1.02020 1.70139 1.07088 1.46873 1.30882 0.85542 0.78012 0.77401 0.81509 1.19773 1.21445 1.21459 1.21543 1.01650 0.87923 0.89904 1.23027 0.97178 0.99999 1.02018 1.23233 0.92831 1.08455 1.00458 0.92602 0.89741 0.93765 0.77750 0.78221 0.75548 0.93803 0.95305 0.93403 0.90713 0.93748 0.87260 0.90784 0.87271 0.87886 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 9.97 71.23 0.71 -1.32 16 2 C -0.15 -3.96 6.35 -18.52 -0.12 -4.08 16 3 C -0.01 -0.10 11.82 83.12 0.98 0.88 16 4 N -0.53 -6.75 5.90 -194.56 -1.15 -7.90 16 5 H 0.44 1.83 8.96 -92.71 -0.83 1.00 16 6 C 0.07 1.27 11.40 83.92 0.96 2.23 16 7 C -0.27 -7.86 6.29 -19.04 -0.12 -7.98 16 8 C 0.58 21.76 7.81 86.62 0.68 22.43 16 9 O -0.60 -27.75 15.32 -4.12 -0.06 -27.81 16 10 N -0.71 -25.11 5.55 -466.54 -2.59 -27.70 16 11 C 0.12 5.25 6.00 86.38 0.52 5.77 16 12 C 0.15 6.77 5.45 86.38 0.47 7.24 16 13 N -0.57 -27.76 2.75 -678.04 -1.86 -29.62 16 14 C -0.27 -14.39 8.47 84.03 0.71 -13.68 16 15 H 0.05 3.00 6.74 -2.91 -0.02 2.98 16 16 C -0.02 -1.35 4.98 84.86 0.42 -0.93 16 17 N -0.91 -50.74 11.50 21.65 0.25 -50.49 16 18 Si 0.95 44.68 29.60 68.60 2.03 46.71 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 C 0.10 4.11 6.56 44.99 0.30 4.40 16 23 C -0.18 -7.14 9.80 30.60 0.30 -6.84 16 24 C -0.21 -8.29 10.36 30.60 0.32 -7.97 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 28 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 29 H 0.20 2.50 7.45 -2.91 -0.02 2.48 16 30 H 0.41 11.53 7.42 -92.71 -0.69 10.84 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.95 8.07 -2.38 -0.02 1.93 16 34 H 0.08 3.75 5.59 -2.39 -0.01 3.73 16 35 H 0.25 13.63 8.32 -92.71 -0.77 12.86 16 36 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 37 H 0.07 3.23 6.46 -2.39 -0.02 3.22 16 38 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 39 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -74.65 336.27 2.29 -72.36 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.45 Total: 24.28 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 6.12 Total: 0.16 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -5.35 Total: -115.70 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.06 Total: -27.81 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -74.65 2.29 -72.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481197340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.671 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds