Wall clock time and date at job start Mon Mar 30 2020 01:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35451 * 125.56680 * 2 1 4 4 C 1.39832 * 107.86922 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.45964 * 179.97438 * 4 3 2 6 6 C 1.37872 * 107.08358 * 0.02562 * 4 3 2 7 7 C 1.46675 * 126.23364 * 180.02562 * 6 4 3 8 8 O 1.21703 * 119.99916 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00236 * 179.97438 * 7 6 4 10 10 C 1.46498 * 119.99785 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.46588 * 180.02562 * 10 9 7 12 12 C 1.31002 * 119.99802 * 127.11407 * 11 10 9 13 13 C 1.50695 * 120.00477 * 7.54249 * 12 11 10 14 14 N 1.46499 * 109.47279 * 127.09638 * 13 12 11 15 15 C 1.36940 * 120.00101 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99675 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00018 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99811 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99884 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47446 * 120.00130 * 19 17 15 22 22 H 1.48506 * 109.47089 * 240.00239 * 19 17 15 23 23 N 1.35536 * 125.56598 * 180.36099 * 2 1 3 24 24 H 0.97007 * 125.67975 * 359.97438 * 23 2 1 25 25 H 1.08995 * 109.47528 * 89.99853 * 1 2 3 26 26 H 1.09010 * 109.47230 * 209.99843 * 1 2 3 27 27 H 1.09001 * 109.46988 * 329.99365 * 1 2 3 28 28 H 1.08005 * 126.06506 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47401 * 270.04385 * 5 4 3 30 30 H 1.09009 * 109.47116 * 30.04658 * 5 4 3 31 31 H 1.09005 * 109.47249 * 150.03997 * 5 4 3 32 32 H 0.96993 * 119.99579 * 0.02562 * 9 7 6 33 33 H 1.08988 * 109.47489 * 60.00437 * 10 9 7 34 34 H 1.09005 * 109.47332 * 299.99422 * 10 9 7 35 35 H 1.07996 * 120.00158 * 307.38802 * 11 10 9 36 36 H 1.08001 * 119.99679 * 187.54226 * 12 11 10 37 37 H 1.08999 * 109.47184 * 247.10571 * 13 12 11 38 38 H 1.09004 * 109.46888 * 7.10110 * 13 12 11 39 39 H 0.96998 * 120.00131 * 0.02562 * 14 13 12 40 40 H 0.97006 * 119.99724 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6269 0.6767 -0.0006 5 6 4.8485 1.5591 -0.0014 6 6 3.6122 -0.7019 -0.0015 7 6 4.7859 -1.5815 -0.0019 8 8 5.9049 -1.1030 -0.0018 9 7 4.6253 -2.9197 -0.0023 10 6 5.7977 -3.7981 -0.0032 11 6 5.3476 -5.2364 -0.0042 12 6 5.8051 -6.0653 -0.9096 13 6 6.9056 -5.6299 -1.8424 14 7 7.9992 -6.6036 -1.7956 15 6 9.1158 -6.4168 -2.5661 16 1 9.1903 -5.5514 -3.2080 17 6 10.1517 -7.3397 -2.5222 18 7 10.0606 -8.3945 -1.7403 19 14 11.6751 -7.0845 -3.5727 20 1 11.5312 -5.8319 -4.3574 21 1 12.8699 -6.9857 -2.6965 22 1 11.8350 -8.2333 -4.5001 23 7 2.2953 -1.1025 -0.0069 24 1 1.9834 -2.0210 -0.0124 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9544 2.1268 0.0004 29 1 5.1421 1.7724 -1.0292 30 1 4.6224 2.4932 0.5132 31 1 5.6647 1.0502 0.5116 32 1 3.7334 -3.3010 -0.0028 33 1 6.3969 -3.6053 0.8865 34 1 6.3961 -3.6046 -0.8935 35 1 4.6445 -5.5827 0.7388 36 1 5.3935 -7.0607 -0.9875 37 1 6.5172 -5.5682 -2.8589 38 1 7.2765 -4.6520 -1.5353 39 1 7.9321 -7.3810 -1.2194 40 1 10.7848 -9.0392 -1.7093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483023343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:59 Heat of formation + Delta-G solvation = 32.036895 kcal Electronic energy + Delta-G solvation = -20261.298305 eV Core-core repulsion = 17077.361938 eV Total energy + Delta-G solvation = -3183.936367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63273 -39.17638 -36.58816 -34.61972 -33.10496 -32.78000 -31.74571 -30.42288 -28.01341 -27.38539 -25.81557 -24.67997 -22.50272 -21.45444 -20.69823 -19.69967 -18.87300 -18.00568 -16.87546 -16.26144 -15.69344 -15.48759 -15.03721 -14.54577 -14.32374 -13.90971 -13.66462 -13.46850 -13.29693 -13.21251 -13.12508 -12.95486 -12.65905 -12.54025 -12.33339 -12.20842 -11.76621 -11.64736 -10.97189 -10.81212 -10.45156 -10.03605 -10.01353 -9.78988 -9.25015 -9.06055 -8.97425 -8.65664 -8.19061 -6.93086 -5.77676 -3.06939 1.28904 2.20660 2.46604 2.79964 3.30682 3.31988 3.44522 3.50468 3.52816 4.48637 4.61247 4.70689 4.78779 4.98961 5.02173 5.10979 5.21542 5.25908 5.44486 5.55519 5.57572 5.65804 5.72267 5.79648 5.85884 5.93393 6.02705 6.18252 6.25152 6.31120 6.50907 6.54245 6.57220 6.76722 6.83608 7.10244 7.12595 7.45879 7.70607 8.15109 8.40741 9.52286 10.07647 10.43027 11.45194 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029094 B = 0.002812 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.151348 B = 9955.413968 C =10586.184778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.050 3.950 3 C -0.209 4.209 4 C -0.071 4.071 5 C -0.091 4.091 6 C -0.057 4.057 7 C 0.585 3.415 8 O -0.523 6.523 9 N -0.726 5.726 10 C 0.142 3.858 11 C -0.202 4.202 12 C -0.107 4.107 13 C 0.161 3.839 14 N -0.728 5.728 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 N -0.539 5.539 24 H 0.414 0.586 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.391 0.609 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.335 16.103 5.601 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C -0.234 4.234 4 C -0.080 4.080 5 C -0.148 4.148 6 C -0.169 4.169 7 C 0.372 3.628 8 O -0.399 6.399 9 N -0.376 5.376 10 C 0.020 3.980 11 C -0.221 4.221 12 C -0.126 4.126 13 C 0.034 3.966 14 N -0.372 5.372 15 C -0.371 4.371 16 H 0.090 0.910 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.740 3.260 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.218 1.218 23 N -0.136 5.136 24 H 0.251 0.749 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.224 0.776 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.218 0.782 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.361 16.344 5.474 27.448 hybrid contribution 0.102 -1.056 -0.300 1.102 sum -21.259 15.289 5.174 26.692 Atomic orbital electron populations 1.20408 0.87695 1.03553 1.03025 1.20500 0.93587 0.86255 1.06415 1.20572 0.91832 0.97919 1.13030 1.19955 0.95518 0.91084 1.01429 1.20361 0.94682 0.97458 1.02347 1.20237 0.82773 0.94262 1.19662 1.17049 0.87526 0.81358 0.76863 1.90844 1.24096 1.74950 1.50060 1.45931 1.10045 1.05649 1.76009 1.20585 0.86957 0.86531 1.03889 1.22582 1.04788 0.94648 1.00126 1.23313 0.95452 0.99256 0.94578 1.20017 0.87261 0.93853 0.95433 1.42276 1.16325 1.26135 1.52467 1.19300 0.94333 1.06020 1.17483 0.90974 1.24764 0.98803 0.97232 1.00190 1.69678 1.33330 1.13250 1.41917 0.86084 0.83086 0.77290 0.79558 1.20438 1.21757 1.21829 1.41870 1.05471 1.08355 1.57895 0.74925 0.90612 0.91556 0.89784 0.84067 0.91437 0.92089 0.90003 0.77633 0.90824 0.89073 0.87144 0.86866 0.95403 0.94583 0.78169 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.41 36.00 0.37 -0.02 16 2 C 0.05 0.40 7.13 -81.95 -0.58 -0.19 16 3 C -0.21 -2.00 10.65 -39.98 -0.43 -2.43 16 4 C -0.07 -0.85 6.21 -104.16 -0.65 -1.50 16 5 C -0.09 -1.04 9.83 36.00 0.35 -0.69 16 6 C -0.06 -0.69 7.06 -81.98 -0.58 -1.26 16 7 C 0.58 8.27 7.79 -12.85 -0.10 8.17 16 8 O -0.52 -9.32 14.80 5.19 0.08 -9.24 16 9 N -0.73 -8.68 5.54 -62.80 -0.35 -9.03 16 10 C 0.14 2.04 5.76 -5.19 -0.03 2.01 16 11 C -0.20 -2.72 9.63 -36.02 -0.35 -3.07 16 12 C -0.11 -1.71 9.63 -36.03 -0.35 -2.06 16 13 C 0.16 3.30 6.35 -5.20 -0.03 3.26 16 14 N -0.73 -18.87 5.59 -61.09 -0.34 -19.21 16 15 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 2.02 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 19 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 N -0.54 -4.54 5.99 -5.70 -0.03 -4.58 16 24 H 0.41 2.26 8.19 -40.82 -0.33 1.92 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.22 8.14 -51.92 -0.42 -0.21 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 1.09 6.48 -51.93 -0.34 0.76 16 32 H 0.39 3.37 7.59 -40.82 -0.31 3.06 16 33 H 0.07 1.13 8.14 -51.94 -0.42 0.70 16 34 H 0.09 1.52 5.30 -51.93 -0.27 1.25 16 35 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.76 5.30 -51.93 -0.28 0.48 16 39 H 0.38 10.41 7.66 -40.82 -0.31 10.09 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -34.56 339.61 -8.05 -42.62 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.62 Total: 9.72 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.61 Total: -5.31 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.00 Total: -60.70 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.56 -8.05 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483023343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.655 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds