Wall clock time and date at job start Mon Mar 30 2020 01:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35451 * 125.56680 * 2 1 4 4 C 1.39832 * 107.86922 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.45964 * 179.97438 * 4 3 2 6 6 C 1.37872 * 107.08358 * 0.02562 * 4 3 2 7 7 C 1.46675 * 126.23364 * 180.02562 * 6 4 3 8 8 O 1.21703 * 119.99916 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00236 * 179.97438 * 7 6 4 10 10 C 1.46498 * 119.99785 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.46588 * 180.02562 * 10 9 7 12 12 C 1.31002 * 119.99802 * 127.11407 * 11 10 9 13 13 C 1.50695 * 120.00477 * 7.54249 * 12 11 10 14 14 N 1.46499 * 109.47279 * 127.09638 * 13 12 11 15 15 C 1.36940 * 120.00101 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99675 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00018 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99811 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99884 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47446 * 120.00130 * 19 17 15 22 22 H 1.48506 * 109.47089 * 240.00239 * 19 17 15 23 23 N 1.35536 * 125.56598 * 180.36099 * 2 1 3 24 24 H 0.97007 * 125.67975 * 359.97438 * 23 2 1 25 25 H 1.08995 * 109.47528 * 89.99853 * 1 2 3 26 26 H 1.09010 * 109.47230 * 209.99843 * 1 2 3 27 27 H 1.09001 * 109.46988 * 329.99365 * 1 2 3 28 28 H 1.08005 * 126.06506 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47401 * 270.04385 * 5 4 3 30 30 H 1.09009 * 109.47116 * 30.04658 * 5 4 3 31 31 H 1.09005 * 109.47249 * 150.03997 * 5 4 3 32 32 H 0.96993 * 119.99579 * 0.02562 * 9 7 6 33 33 H 1.08988 * 109.47489 * 60.00437 * 10 9 7 34 34 H 1.09005 * 109.47332 * 299.99422 * 10 9 7 35 35 H 1.07996 * 120.00158 * 307.38802 * 11 10 9 36 36 H 1.08001 * 119.99679 * 187.54226 * 12 11 10 37 37 H 1.08999 * 109.47184 * 247.10571 * 13 12 11 38 38 H 1.09004 * 109.46888 * 7.10110 * 13 12 11 39 39 H 0.96998 * 120.00131 * 0.02562 * 14 13 12 40 40 H 0.97006 * 119.99724 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6269 0.6767 -0.0006 5 6 4.8485 1.5591 -0.0014 6 6 3.6122 -0.7019 -0.0015 7 6 4.7859 -1.5815 -0.0019 8 8 5.9049 -1.1030 -0.0018 9 7 4.6253 -2.9197 -0.0023 10 6 5.7977 -3.7981 -0.0032 11 6 5.3476 -5.2364 -0.0042 12 6 5.8051 -6.0653 -0.9096 13 6 6.9056 -5.6299 -1.8424 14 7 7.9992 -6.6036 -1.7956 15 6 9.1158 -6.4168 -2.5661 16 1 9.1903 -5.5514 -3.2080 17 6 10.1517 -7.3397 -2.5222 18 7 10.0606 -8.3945 -1.7403 19 14 11.6751 -7.0845 -3.5727 20 1 11.5312 -5.8319 -4.3574 21 1 12.8699 -6.9857 -2.6965 22 1 11.8350 -8.2333 -4.5001 23 7 2.2953 -1.1025 -0.0069 24 1 1.9834 -2.0210 -0.0124 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9544 2.1268 0.0004 29 1 5.1421 1.7724 -1.0292 30 1 4.6224 2.4932 0.5132 31 1 5.6647 1.0502 0.5116 32 1 3.7334 -3.3010 -0.0028 33 1 6.3969 -3.6053 0.8865 34 1 6.3961 -3.6046 -0.8935 35 1 4.6445 -5.5827 0.7388 36 1 5.3935 -7.0607 -0.9875 37 1 6.5172 -5.5682 -2.8589 38 1 7.2765 -4.6520 -1.5353 39 1 7.9321 -7.3810 -1.2194 40 1 10.7848 -9.0392 -1.7093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483023343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:58 Heat of formation + Delta-G solvation = 7.244948 kcal Electronic energy + Delta-G solvation = -20262.373364 eV Core-core repulsion = 17077.361938 eV Total energy + Delta-G solvation = -3185.011426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41289 -40.26226 -38.00129 -36.19733 -34.57860 -33.65994 -32.68377 -32.08043 -28.81570 -28.48937 -27.24019 -25.96810 -24.43033 -22.43887 -21.39593 -20.76289 -19.91867 -19.38349 -18.55914 -17.55666 -16.77748 -16.57220 -16.32187 -15.93929 -15.46070 -15.23576 -15.10262 -14.81934 -14.34709 -14.21370 -14.04123 -13.87184 -13.81971 -13.55170 -13.30637 -13.04760 -12.96249 -12.90938 -12.75992 -12.41080 -12.15969 -11.93877 -11.69647 -11.17265 -11.04529 -10.44901 -10.02427 -9.71857 -9.03703 -8.96318 -8.00215 -5.29788 0.40713 0.99195 1.45325 1.46332 1.56796 1.73098 2.08396 2.29058 2.30819 2.54202 3.33420 3.72573 3.90555 3.97042 4.07520 4.14413 4.20991 4.28857 4.30605 4.56317 4.64745 4.80334 4.81628 4.85158 4.87105 4.87921 4.94732 5.01628 5.14863 5.20643 5.28708 5.43764 5.48325 5.53201 5.80738 5.81375 5.95586 6.22780 6.43713 6.59997 7.11567 7.28782 8.01820 8.26879 9.23384 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029094 B = 0.002812 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.151348 B = 9955.413968 C =10586.184778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.071 3.929 3 C -0.227 4.227 4 C -0.090 4.090 5 C -0.090 4.090 6 C -0.086 4.086 7 C 0.581 3.419 8 O -0.572 6.572 9 N -0.709 5.709 10 C 0.143 3.857 11 C -0.161 4.161 12 C -0.131 4.131 13 C 0.160 3.840 14 N -0.741 5.741 15 C -0.250 4.250 16 H 0.073 0.927 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.975 3.025 20 H -0.268 1.268 21 H -0.291 1.291 22 H -0.288 1.288 23 N -0.526 5.526 24 H 0.428 0.572 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.160 0.840 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.410 0.590 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.025 0.975 38 H 0.032 0.968 39 H 0.376 0.624 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.131 16.757 5.866 30.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C -0.251 4.251 4 C -0.099 4.099 5 C -0.147 4.147 6 C -0.198 4.198 7 C 0.370 3.630 8 O -0.451 6.451 9 N -0.361 5.361 10 C 0.020 3.980 11 C -0.180 4.180 12 C -0.150 4.150 13 C 0.034 3.966 14 N -0.384 5.384 15 C -0.382 4.382 16 H 0.091 0.909 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.804 3.196 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.215 1.215 23 N -0.125 5.125 24 H 0.268 0.732 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.178 0.822 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.246 0.754 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.145 0.855 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.208 0.792 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -24.226 16.991 5.729 30.140 hybrid contribution 0.823 -1.126 -0.345 1.436 sum -23.403 15.865 5.385 28.782 Atomic orbital electron populations 1.20574 0.84551 1.05139 1.04279 1.21140 0.95270 0.85426 1.02980 1.20859 0.90861 0.99521 1.13824 1.20257 0.96655 0.91411 1.01597 1.20314 0.94153 0.98200 1.02012 1.19890 0.83447 0.94000 1.22495 1.17409 0.87665 0.81907 0.75972 1.90815 1.26095 1.75822 1.52417 1.45662 1.10317 1.04850 1.75283 1.20390 0.87696 0.87761 1.02168 1.22772 1.03271 0.93079 0.98834 1.23056 0.95816 1.00649 0.95503 1.20088 0.87353 0.92557 0.96579 1.42474 1.17109 1.26896 1.51915 1.19664 0.95347 1.05776 1.17408 0.90925 1.25601 1.01901 0.97242 1.01874 1.69818 1.34196 1.14143 1.43623 0.85051 0.79140 0.77526 0.77904 1.19274 1.21782 1.21515 1.41834 1.04157 1.09469 1.57027 0.73196 0.89349 0.89837 0.88394 0.82246 0.91818 0.90020 0.92595 0.75353 0.91753 0.91826 0.83061 0.85515 0.95771 0.95060 0.79184 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.41 71.23 0.74 0.34 16 2 C 0.07 0.92 7.13 41.34 0.29 1.22 16 3 C -0.23 -3.89 10.65 22.01 0.23 -3.66 16 4 C -0.09 -2.11 6.21 -19.57 -0.12 -2.24 16 5 C -0.09 -2.12 9.83 71.23 0.70 -1.42 16 6 C -0.09 -2.02 7.06 40.35 0.28 -1.73 16 7 C 0.58 16.66 7.79 86.45 0.67 17.33 16 8 O -0.57 -21.46 14.80 -4.36 -0.06 -21.53 16 9 N -0.71 -16.33 5.54 -470.81 -2.61 -18.94 16 10 C 0.14 4.06 5.76 85.63 0.49 4.55 16 11 C -0.16 -3.97 9.63 25.65 0.25 -3.72 16 12 C -0.13 -4.07 9.63 25.64 0.25 -3.83 16 13 C 0.16 6.64 6.35 85.63 0.54 7.18 16 14 N -0.74 -39.15 5.59 -347.18 -1.94 -41.09 16 15 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 16 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 18 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 19 Si 0.98 47.39 29.55 68.60 2.03 49.41 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 N -0.53 -7.63 5.99 -171.94 -1.03 -8.66 16 24 H 0.43 3.35 8.19 -92.70 -0.76 2.59 16 25 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.08 0.15 8.14 -2.38 -0.02 0.14 16 27 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.06 1.60 6.48 -2.38 -0.02 1.59 16 32 H 0.41 6.10 7.59 -92.71 -0.70 5.40 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.06 2.20 5.30 -2.38 -0.01 2.19 16 35 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.03 1.35 5.30 -2.39 -0.01 1.34 16 39 H 0.38 20.78 7.66 -92.71 -0.71 20.07 16 40 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -77.25 339.61 1.21 -76.04 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -1.09 Total: 28.30 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.64 Total: -3.59 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -5.30 Total: -128.63 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.53 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -77.25 1.21 -76.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483023343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.281 kcal (2) G-P(sol) polarization free energy of solvation -77.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds