Wall clock time and date at job start Mon Mar 30 2020 02:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35457 * 125.56695 * 2 1 4 4 C 1.39830 * 107.86594 * 180.12816 * 3 2 1 5 5 C 1.50703 * 126.45674 * 179.83342 * 4 3 2 6 6 C 1.37877 * 107.08807 * 359.57119 * 4 3 2 7 7 C 1.46672 * 126.23558 * 180.24075 * 6 4 3 8 8 O 1.21694 * 119.99952 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99971 * 179.97438 * 7 6 4 10 10 C 1.46506 * 119.99932 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.31003 * 119.99870 * 124.99576 * 11 10 9 13 13 C 1.50707 * 119.99602 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.46731 * 125.00540 * 13 12 11 15 15 C 1.36932 * 119.99825 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00402 * 0.02562 * 15 14 13 17 17 C 1.38818 * 120.00277 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99561 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00268 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47010 * 60.00596 * 19 17 15 21 21 H 1.48496 * 109.47245 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47085 * 300.00489 * 19 17 15 23 23 N 1.35536 * 125.56567 * 179.64131 * 2 1 3 24 24 H 0.97004 * 125.67756 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47026 * 270.33161 * 1 2 3 26 26 H 1.08993 * 109.47087 * 30.33023 * 1 2 3 27 27 H 1.08996 * 109.46908 * 150.33402 * 1 2 3 28 28 H 1.08001 * 126.06437 * 359.95892 * 3 2 1 29 29 H 1.09002 * 109.47152 * 269.68794 * 5 4 3 30 30 H 1.09001 * 109.46980 * 149.68894 * 5 4 3 31 31 H 1.09004 * 109.47113 * 29.68875 * 5 4 3 32 32 H 0.96998 * 120.00173 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.46822 * 300.00056 * 10 9 7 34 34 H 1.08997 * 109.47061 * 59.99953 * 10 9 7 35 35 H 1.07999 * 120.00135 * 305.00348 * 11 10 9 36 36 H 1.07993 * 120.00297 * 0.02562 * 12 11 10 37 37 H 1.09001 * 109.46633 * 244.99790 * 13 12 11 38 38 H 1.08990 * 109.47143 * 5.00278 * 13 12 11 39 39 H 0.96997 * 120.00083 * 359.97438 * 14 13 12 40 40 H 0.97002 * 119.99872 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0030 5 6 4.8486 1.5592 -0.0076 6 6 3.6122 -0.7020 0.0051 7 6 4.7860 -1.5815 0.0104 8 8 5.9049 -1.1030 0.0082 9 7 4.6253 -2.9196 0.0188 10 6 5.7977 -3.7982 0.0246 11 6 5.3476 -5.2364 0.0329 12 6 5.7735 -6.0613 -0.8914 13 6 5.3239 -7.4997 -0.8827 14 7 4.7277 -7.8327 -2.1789 15 6 4.2448 -9.0936 -2.4066 16 1 4.3031 -9.8426 -1.6307 17 6 3.6794 -9.4091 -3.6346 18 7 3.6078 -8.4963 -4.5800 19 14 3.0214 -11.1295 -3.9455 20 1 1.9462 -11.4325 -2.9671 21 1 2.4738 -11.2084 -5.3236 22 1 4.1216 -12.1153 -3.7932 23 7 2.2953 -1.1025 0.0069 24 1 1.9834 -2.0210 0.0123 25 1 -0.3633 0.0059 1.0276 26 1 -0.3633 0.8870 -0.5189 27 1 -0.3633 -0.8929 -0.5086 28 1 1.9545 2.1268 -0.0006 29 1 5.1436 1.7659 -1.0363 30 1 5.6640 1.0535 0.5096 31 1 4.6217 2.4964 0.5007 32 1 3.7334 -3.3010 0.0209 33 1 6.3968 -3.6104 -0.8664 34 1 6.3963 -3.5993 0.9135 35 1 4.6739 -5.5870 0.8007 36 1 6.4474 -5.7108 -1.6590 37 1 6.1815 -8.1472 -0.7002 38 1 4.5849 -7.6445 -0.0948 39 1 4.6749 -7.1599 -2.8756 40 1 3.2131 -8.7168 -5.4382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483023357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:01 Heat of formation + Delta-G solvation = 22.662752 kcal Electronic energy + Delta-G solvation = -20090.755460 eV Core-core repulsion = 16906.412600 eV Total energy + Delta-G solvation = -3184.342860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59988 -39.18326 -36.33089 -34.81461 -33.10454 -32.76906 -31.75536 -30.57167 -28.03860 -27.59505 -26.05380 -24.09208 -22.10644 -21.34807 -20.61848 -19.94765 -19.16029 -18.33541 -17.14169 -15.94415 -15.68088 -15.57377 -14.85459 -14.66059 -14.25112 -13.82155 -13.72475 -13.49576 -13.31549 -13.20086 -13.10917 -12.96398 -12.78461 -12.42893 -12.19869 -12.06064 -11.88244 -11.63889 -11.08034 -10.84821 -10.68530 -10.16707 -10.07588 -9.84610 -9.34625 -9.05708 -8.94193 -8.77972 -8.16703 -7.00283 -5.82564 -3.12509 1.30351 2.21176 2.49640 2.85693 3.29629 3.29955 3.39955 3.44400 3.45628 4.54786 4.55395 4.72662 4.83135 4.96411 5.03083 5.18944 5.20395 5.25693 5.50226 5.52915 5.57004 5.59038 5.72675 5.76652 5.78495 5.93936 6.01181 6.07975 6.21504 6.30609 6.41209 6.51773 6.59722 6.78858 6.84407 7.08510 7.16652 7.43285 7.63037 8.09867 8.35623 9.46863 10.02773 10.38108 11.40032 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.002920 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.289293 B = 9586.897248 C =10554.078828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.054 3.946 3 C -0.211 4.211 4 C -0.072 4.072 5 C -0.090 4.090 6 C -0.060 4.060 7 C 0.588 3.412 8 O -0.531 6.531 9 N -0.726 5.726 10 C 0.157 3.843 11 C -0.204 4.204 12 C -0.104 4.104 13 C 0.172 3.828 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 N -0.537 5.537 24 H 0.416 0.584 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.142 0.858 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.396 0.604 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.032 0.968 38 H 0.025 0.975 39 H 0.385 0.615 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 18.860 11.659 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.064 4.064 3 C -0.235 4.235 4 C -0.080 4.080 5 C -0.147 4.147 6 C -0.172 4.172 7 C 0.376 3.624 8 O -0.408 6.408 9 N -0.377 5.377 10 C 0.035 3.965 11 C -0.224 4.224 12 C -0.124 4.124 13 C 0.045 3.955 14 N -0.374 5.374 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 N -0.134 5.134 24 H 0.253 0.747 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.219 0.781 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.101 18.833 11.669 22.371 hybrid contribution -1.091 -1.484 -0.508 1.911 sum -4.192 17.349 11.161 21.050 Atomic orbital electron populations 1.20427 0.87622 1.03773 1.03029 1.20537 0.93680 0.86211 1.05939 1.20562 0.91799 0.97916 1.13226 1.19934 0.95506 0.91032 1.01575 1.20344 0.94650 0.97427 1.02264 1.20181 0.82849 0.94202 1.19995 1.17048 0.87530 0.81331 0.76512 1.90802 1.24182 1.75086 1.50703 1.45955 1.10336 1.05604 1.75774 1.20330 0.87127 0.86601 1.02455 1.22686 1.04337 0.93783 1.01571 1.23359 0.96438 0.96735 0.95819 1.19831 0.95648 0.89686 0.90316 1.42290 1.71918 1.12172 1.11035 1.19199 1.31894 0.88587 0.97848 0.91113 1.24771 1.01756 0.98022 0.96342 1.69656 1.50410 1.33006 1.05020 0.86231 0.78758 0.83962 0.77004 1.21218 1.21606 1.21152 1.41913 1.05456 1.08547 1.57516 0.74690 0.90603 0.89742 0.91316 0.84053 0.91514 0.90144 0.92106 0.77069 0.90969 0.90863 0.86822 0.87176 0.95058 0.95709 0.78139 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.41 36.00 0.37 -0.14 16 2 C 0.05 0.49 7.13 -81.95 -0.58 -0.10 16 3 C -0.21 -2.13 10.66 -39.98 -0.43 -2.56 16 4 C -0.07 -0.87 6.21 -104.16 -0.65 -1.52 16 5 C -0.09 -0.99 9.83 36.01 0.35 -0.64 16 6 C -0.06 -0.75 7.06 -81.98 -0.58 -1.32 16 7 C 0.59 8.18 7.79 -12.86 -0.10 8.08 16 8 O -0.53 -8.85 14.80 5.19 0.08 -8.77 16 9 N -0.73 -8.80 5.54 -62.80 -0.35 -9.15 16 10 C 0.16 2.01 6.11 -5.19 -0.03 1.98 16 11 C -0.20 -2.74 9.24 -36.03 -0.33 -3.08 16 12 C -0.10 -1.67 9.24 -36.02 -0.33 -2.00 16 13 C 0.17 3.41 6.70 -5.19 -0.03 3.38 16 14 N -0.73 -18.49 5.59 -61.08 -0.34 -18.83 16 15 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 16 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 19 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 N -0.54 -5.15 5.99 -5.70 -0.03 -5.19 16 24 H 0.42 3.00 8.19 -40.82 -0.33 2.66 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.02 6.48 -51.93 -0.34 0.68 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.40 3.99 7.59 -40.82 -0.31 3.68 16 33 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.11 1.43 7.84 -52.49 -0.41 1.02 16 36 H 0.11 1.75 7.84 -52.49 -0.41 1.33 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.49 7.79 -51.93 -0.40 0.08 16 39 H 0.39 10.27 7.66 -40.82 -0.31 9.96 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -33.43 344.10 -8.20 -41.63 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.85 Total: 10.70 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.58 Total: -5.35 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.00 Total: -60.56 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.43 -8.20 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483023357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.291 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds