Wall clock time and date at job start Mon Mar 30 2020 02:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35457 * 125.56695 * 2 1 4 4 C 1.39830 * 107.86594 * 180.12816 * 3 2 1 5 5 C 1.50703 * 126.45674 * 179.83342 * 4 3 2 6 6 C 1.37877 * 107.08807 * 359.57119 * 4 3 2 7 7 C 1.46672 * 126.23558 * 180.24075 * 6 4 3 8 8 O 1.21694 * 119.99952 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99971 * 179.97438 * 7 6 4 10 10 C 1.46506 * 119.99932 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.31003 * 119.99870 * 124.99576 * 11 10 9 13 13 C 1.50707 * 119.99602 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.46731 * 125.00540 * 13 12 11 15 15 C 1.36932 * 119.99825 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00402 * 0.02562 * 15 14 13 17 17 C 1.38818 * 120.00277 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99561 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00268 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47010 * 60.00596 * 19 17 15 21 21 H 1.48496 * 109.47245 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47085 * 300.00489 * 19 17 15 23 23 N 1.35536 * 125.56567 * 179.64131 * 2 1 3 24 24 H 0.97004 * 125.67756 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47026 * 270.33161 * 1 2 3 26 26 H 1.08993 * 109.47087 * 30.33023 * 1 2 3 27 27 H 1.08996 * 109.46908 * 150.33402 * 1 2 3 28 28 H 1.08001 * 126.06437 * 359.95892 * 3 2 1 29 29 H 1.09002 * 109.47152 * 269.68794 * 5 4 3 30 30 H 1.09001 * 109.46980 * 149.68894 * 5 4 3 31 31 H 1.09004 * 109.47113 * 29.68875 * 5 4 3 32 32 H 0.96998 * 120.00173 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.46822 * 300.00056 * 10 9 7 34 34 H 1.08997 * 109.47061 * 59.99953 * 10 9 7 35 35 H 1.07999 * 120.00135 * 305.00348 * 11 10 9 36 36 H 1.07993 * 120.00297 * 0.02562 * 12 11 10 37 37 H 1.09001 * 109.46633 * 244.99790 * 13 12 11 38 38 H 1.08990 * 109.47143 * 5.00278 * 13 12 11 39 39 H 0.96997 * 120.00083 * 359.97438 * 14 13 12 40 40 H 0.97002 * 119.99872 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0030 5 6 4.8486 1.5592 -0.0076 6 6 3.6122 -0.7020 0.0051 7 6 4.7860 -1.5815 0.0104 8 8 5.9049 -1.1030 0.0082 9 7 4.6253 -2.9196 0.0188 10 6 5.7977 -3.7982 0.0246 11 6 5.3476 -5.2364 0.0329 12 6 5.7735 -6.0613 -0.8914 13 6 5.3239 -7.4997 -0.8827 14 7 4.7277 -7.8327 -2.1789 15 6 4.2448 -9.0936 -2.4066 16 1 4.3031 -9.8426 -1.6307 17 6 3.6794 -9.4091 -3.6346 18 7 3.6078 -8.4963 -4.5800 19 14 3.0214 -11.1295 -3.9455 20 1 1.9462 -11.4325 -2.9671 21 1 2.4738 -11.2084 -5.3236 22 1 4.1216 -12.1153 -3.7932 23 7 2.2953 -1.1025 0.0069 24 1 1.9834 -2.0210 0.0123 25 1 -0.3633 0.0059 1.0276 26 1 -0.3633 0.8870 -0.5189 27 1 -0.3633 -0.8929 -0.5086 28 1 1.9545 2.1268 -0.0006 29 1 5.1436 1.7659 -1.0363 30 1 5.6640 1.0535 0.5096 31 1 4.6217 2.4964 0.5007 32 1 3.7334 -3.3010 0.0209 33 1 6.3968 -3.6104 -0.8664 34 1 6.3963 -3.5993 0.9135 35 1 4.6739 -5.5870 0.8007 36 1 6.4474 -5.7108 -1.6590 37 1 6.1815 -8.1472 -0.7002 38 1 4.5849 -7.6445 -0.0948 39 1 4.6749 -7.1599 -2.8756 40 1 3.2131 -8.7168 -5.4382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483023357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:01 Heat of formation + Delta-G solvation = -0.319817 kcal Electronic energy + Delta-G solvation = -20091.752059 eV Core-core repulsion = 16906.412600 eV Total energy + Delta-G solvation = -3185.339459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.41344 -40.22900 -37.71303 -36.31750 -34.55731 -33.66460 -32.78742 -32.08875 -29.11272 -28.57224 -27.20606 -25.68381 -23.72525 -22.35268 -21.37690 -21.12196 -20.15407 -19.35505 -19.03693 -17.09392 -16.78486 -16.60933 -16.41567 -15.77177 -15.46031 -15.23065 -15.06711 -14.86940 -14.32091 -14.28411 -13.90271 -13.87912 -13.58094 -13.51566 -13.35947 -13.07304 -12.92043 -12.89999 -12.72170 -12.41695 -12.26092 -12.01964 -11.82063 -11.20072 -11.02318 -10.46557 -10.07404 -9.72761 -9.04331 -8.98338 -7.98147 -5.28433 0.40128 0.99938 1.46956 1.50043 1.56398 1.72205 2.09389 2.29888 2.30022 2.55402 3.35609 3.66563 3.87802 3.95491 4.04764 4.19481 4.20601 4.27880 4.43033 4.62461 4.63542 4.67642 4.80806 4.82999 4.88469 4.89538 4.94380 4.97025 5.12965 5.17927 5.26887 5.45164 5.47196 5.61026 5.78577 5.80693 5.96337 6.23592 6.39459 6.55762 7.07172 7.29772 8.03509 8.27558 9.25113 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.002920 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.289293 B = 9586.897248 C =10554.078828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.067 3.933 3 C -0.226 4.226 4 C -0.088 4.088 5 C -0.087 4.087 6 C -0.090 4.090 7 C 0.585 3.415 8 O -0.567 6.567 9 N -0.718 5.718 10 C 0.159 3.841 11 C -0.163 4.163 12 C -0.129 4.129 13 C 0.173 3.827 14 N -0.745 5.745 15 C -0.251 4.251 16 H 0.078 0.922 17 C -0.075 4.075 18 N -0.970 5.970 19 Si 0.977 3.023 20 H -0.275 1.275 21 H -0.295 1.295 22 H -0.277 1.277 23 N -0.531 5.531 24 H 0.426 0.574 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.161 0.839 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.407 0.593 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.374 0.626 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 18.997 12.882 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C -0.249 4.249 4 C -0.097 4.097 5 C -0.144 4.144 6 C -0.202 4.202 7 C 0.375 3.625 8 O -0.447 6.447 9 N -0.369 5.369 10 C 0.037 3.963 11 C -0.182 4.182 12 C -0.149 4.149 13 C 0.048 3.952 14 N -0.388 5.388 15 C -0.383 4.383 16 H 0.096 0.904 17 C -0.267 4.267 18 N -0.620 5.620 19 Si 0.805 3.195 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.204 1.204 23 N -0.129 5.129 24 H 0.265 0.735 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.179 0.821 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.242 0.758 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.206 0.794 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.831 18.938 12.943 23.441 hybrid contribution -0.578 -1.427 -0.785 1.728 sum -5.409 17.511 12.157 21.993 Atomic orbital electron populations 1.20570 0.84895 1.04909 1.04320 1.21148 0.95234 0.85585 1.03247 1.20864 0.90991 0.99363 1.13690 1.20278 0.96689 0.91284 1.01496 1.20313 0.93941 0.98093 1.02092 1.20011 0.83454 0.94230 1.22486 1.17295 0.87622 0.81727 0.75882 1.90777 1.25618 1.75725 1.52568 1.45819 1.10688 1.05135 1.75253 1.20260 0.87427 0.86185 1.02474 1.22752 1.02032 0.93369 1.00079 1.23029 0.98764 0.95348 0.97708 1.19912 0.95360 0.91969 0.87981 1.42526 1.72199 1.11243 1.12782 1.19641 1.30876 0.89772 0.97984 0.90363 1.25628 1.02845 1.01932 0.96338 1.69819 1.51900 1.35010 1.05292 0.85165 0.78323 0.79436 0.76547 1.20075 1.22126 1.20353 1.41922 1.04553 1.09423 1.56988 0.73494 0.89100 0.88347 0.90458 0.82103 0.91733 0.92194 0.90010 0.75781 0.92025 0.89938 0.85098 0.87449 0.95132 0.94798 0.79432 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.41 71.24 0.74 0.02 16 2 C 0.07 1.05 7.13 41.34 0.29 1.35 16 3 C -0.23 -4.16 10.66 22.01 0.23 -3.92 16 4 C -0.09 -2.09 6.21 -19.56 -0.12 -2.22 16 5 C -0.09 -1.95 9.83 71.24 0.70 -1.25 16 6 C -0.09 -2.19 7.06 40.35 0.28 -1.90 16 7 C 0.59 16.31 7.79 86.45 0.67 16.98 16 8 O -0.57 -19.39 14.80 -4.33 -0.06 -19.46 16 9 N -0.72 -16.78 5.54 -470.82 -2.61 -19.39 16 10 C 0.16 3.91 6.11 85.63 0.52 4.43 16 11 C -0.16 -4.10 9.24 25.64 0.24 -3.86 16 12 C -0.13 -4.05 9.24 25.65 0.24 -3.82 16 13 C 0.17 6.75 6.70 85.63 0.57 7.33 16 14 N -0.74 -37.82 5.59 -347.16 -1.94 -39.76 16 15 C -0.25 -13.96 9.99 84.04 0.84 -13.12 16 16 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 17 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 18 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 19 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 N -0.53 -9.35 5.99 -171.93 -1.03 -10.38 16 24 H 0.43 5.36 8.19 -92.71 -0.76 4.60 16 25 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.58 6.48 -2.39 -0.02 1.56 16 31 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.41 7.59 7.59 -92.71 -0.70 6.89 16 33 H 0.06 1.68 7.79 -2.39 -0.02 1.66 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.13 2.90 7.84 -2.91 -0.02 2.88 16 36 H 0.11 3.43 7.84 -2.91 -0.02 3.41 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.03 1.27 7.79 -2.39 -0.02 1.25 16 39 H 0.37 20.29 7.66 -92.71 -0.71 19.58 16 40 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -72.11 344.10 1.24 -70.87 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -1.10 Total: 33.33 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.68 Total: -3.81 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -5.30 Total: -128.45 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.11 1.24 -70.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483023357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.546 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds