Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39833 * 126.45765 * 2 1 4 4 C 1.35454 * 107.86274 * 180.02562 * 3 2 1 5 5 N 1.35532 * 108.87481 * 0.02562 * 4 3 2 6 6 C 1.46497 * 125.68343 * 179.97438 * 5 4 3 7 7 C 1.37656 * 108.64284 * 0.24109 * 5 4 3 8 8 C 1.46677 * 126.23357 * 179.76074 * 7 5 4 9 9 O 1.21688 * 119.99863 * 185.18635 * 8 7 5 10 10 N 1.34770 * 120.00312 * 5.18264 * 8 7 5 11 11 C 1.46498 * 120.00445 * 182.48434 * 10 8 7 12 12 C 1.52998 * 109.47298 * 181.26083 * 11 10 8 13 13 N 1.46511 * 115.54999 * 271.06194 * 12 11 10 14 14 C 1.36934 * 119.99788 * 303.98506 * 13 12 11 15 15 H 1.07994 * 120.00295 * 355.39575 * 14 13 12 16 16 C 1.38816 * 119.99450 * 175.39781 * 14 13 12 17 17 N 1.31612 * 120.00509 * 11.01050 * 16 14 13 18 18 Si 1.86804 * 119.99825 * 191.01145 * 16 14 13 19 19 H 1.48499 * 109.47362 * 94.74041 * 18 16 14 20 20 H 1.48497 * 109.47122 * 214.74646 * 18 16 14 21 21 H 1.48507 * 109.46814 * 334.74638 * 18 16 14 22 22 C 1.52996 * 117.49981 * 125.39514 * 12 11 10 23 23 C 1.52998 * 117.50186 * 56.73257 * 12 11 10 24 24 H 1.09002 * 109.46645 * 89.97526 * 1 2 3 25 25 H 1.08997 * 109.47451 * 209.97556 * 1 2 3 26 26 H 1.09002 * 109.46889 * 329.97670 * 1 2 3 27 27 H 1.07998 * 126.07094 * 0.03195 * 3 2 1 28 28 H 1.07997 * 125.56415 * 179.97438 * 4 3 2 29 29 H 1.09004 * 109.47015 * 94.49372 * 6 5 4 30 30 H 1.09010 * 109.46915 * 334.50191 * 6 5 4 31 31 H 1.09002 * 109.47669 * 214.50136 * 6 5 4 32 32 H 0.97009 * 119.99918 * 2.49137 * 10 8 7 33 33 H 1.08994 * 109.47131 * 301.26210 * 11 10 8 34 34 H 1.09000 * 109.46578 * 61.26507 * 11 10 8 35 35 H 0.97001 * 119.99672 * 123.97769 * 13 12 11 36 36 H 0.96994 * 120.00479 * 179.97438 * 17 16 14 37 37 H 1.08998 * 117.49661 * 359.97438 * 22 12 11 38 38 H 1.09001 * 117.50261 * 145.02116 * 22 12 11 39 39 H 1.09002 * 117.50113 * 214.98473 * 23 12 11 40 40 H 1.09004 * 117.49486 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6927 -0.0006 5 7 3.6284 -0.6626 -0.0015 6 6 4.8225 -1.5113 -0.0029 7 6 2.3262 -1.1090 -0.0070 8 6 1.8898 -2.5093 -0.0147 9 8 0.7070 -2.7774 -0.1143 10 7 2.7987 -3.4990 0.0885 11 6 2.3686 -4.8980 0.0261 12 6 3.5826 -5.8130 0.1989 13 7 4.2854 -6.1704 -1.0360 14 6 3.6033 -6.7633 -2.0648 15 1 2.5658 -7.0351 -1.9390 16 6 4.2458 -7.0149 -3.2693 17 7 5.5528 -6.8879 -3.3573 18 14 3.2551 -7.5336 -4.7657 19 1 2.9354 -6.3381 -5.5865 20 1 4.0478 -8.4929 -5.5759 21 1 1.9942 -8.1822 -4.3240 22 6 3.5214 -6.8662 1.3070 23 6 4.4234 -5.6397 1.4653 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 2.0137 2.1548 0.0005 28 1 4.4973 1.3251 -0.0011 29 1 5.0727 -1.7881 1.0213 30 1 5.6558 -0.9653 -0.4455 31 1 4.6277 -2.4117 -0.5855 32 1 3.7378 -3.2850 0.2042 33 1 1.6503 -5.0932 0.8224 34 1 1.9021 -5.0919 -0.9397 35 1 5.2337 -5.9870 -1.1247 36 1 6.0017 -7.0641 -4.1988 37 1 2.6165 -6.9070 1.9131 38 1 4.0044 -7.8249 1.1175 39 1 5.4994 -5.7918 1.3799 40 1 4.1119 -4.8734 2.1752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483729044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = 58.665437 kcal Electronic energy + Delta-G solvation = -21730.916901 eV Core-core repulsion = 18548.135235 eV Total energy + Delta-G solvation = -3182.781666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42616 -38.95283 -37.45091 -34.53485 -33.21076 -32.88573 -30.28887 -29.79610 -28.48983 -26.55258 -25.00359 -23.95229 -22.30844 -21.64737 -20.16471 -19.79922 -18.72205 -17.27145 -17.16199 -15.87983 -15.69318 -15.49022 -15.11396 -14.36752 -14.31920 -14.03813 -13.74427 -13.46610 -13.16308 -13.07917 -12.86632 -12.39765 -12.18680 -12.03915 -11.92745 -11.79706 -11.49020 -11.14587 -11.03805 -10.88113 -10.33277 -10.27324 -9.82102 -9.76174 -9.48721 -8.85457 -8.72053 -8.55406 -8.03944 -7.13176 -5.91776 -3.19573 1.58684 2.73176 2.78371 3.38505 3.43258 3.45995 3.46818 3.61235 4.36608 4.54456 4.59335 4.78059 4.93844 5.04842 5.15182 5.24626 5.28292 5.36697 5.38013 5.42538 5.57215 5.75965 5.77634 5.96430 5.98509 6.00835 6.17433 6.21266 6.37087 6.47673 6.49207 6.62536 6.70192 6.73720 6.85253 7.04525 7.20206 7.65847 7.81475 8.26779 8.48655 9.38579 9.90920 10.26583 11.29968 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.004972 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.748386 B = 5630.407684 C = 5956.772503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.083 4.083 3 C -0.213 4.213 4 C 0.016 3.984 5 N -0.429 5.429 6 C 0.051 3.949 7 C -0.054 4.054 8 C 0.583 3.417 9 O -0.535 6.535 10 N -0.722 5.722 11 C 0.146 3.854 12 C 0.132 3.868 13 N -0.688 5.688 14 C -0.243 4.243 15 H 0.075 0.925 16 C -0.006 4.006 17 N -0.928 5.928 18 Si 0.904 3.096 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.279 1.279 22 C -0.192 4.192 23 C -0.193 4.193 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.141 0.859 28 H 0.167 0.833 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.395 0.605 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 13.617 9.916 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.237 4.237 4 C -0.118 4.118 5 N -0.105 5.105 6 C -0.091 4.091 7 C -0.165 4.165 8 C 0.370 3.630 9 O -0.412 6.412 10 N -0.377 5.377 11 C 0.021 3.979 12 C 0.037 3.963 13 N -0.327 5.327 14 C -0.373 4.373 15 H 0.093 0.907 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.734 3.266 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.234 4.234 23 C -0.231 4.231 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.184 0.816 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.235 0.765 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.770 13.021 9.662 16.311 hybrid contribution 0.632 -0.173 -0.887 1.103 sum -1.137 12.848 8.775 15.601 Atomic orbital electron populations 1.20285 0.89413 1.02405 1.02128 1.19903 0.95735 0.90774 1.02729 1.20724 0.91784 0.98541 1.12673 1.21925 0.99403 0.82632 1.07869 1.43974 1.05553 1.06418 1.54582 1.22442 0.86382 0.96283 1.04005 1.20411 0.83151 0.93939 1.19038 1.17050 0.85947 0.83020 0.76952 1.90781 1.16284 1.83375 1.50794 1.46489 1.10676 1.06754 1.73763 1.21252 0.95621 0.78288 1.02710 1.20177 0.94367 0.97662 0.84056 1.41825 1.08829 1.70756 1.11254 1.19175 0.95269 1.32128 0.90778 0.90707 1.24748 0.95604 1.01867 0.98014 1.69700 1.06757 1.55249 1.25753 0.86217 0.79274 0.77835 0.83235 1.21588 1.21816 1.20401 1.23476 1.00803 0.94739 1.04358 1.23092 0.98091 1.01424 1.00449 0.91632 0.90417 0.92343 0.84165 0.81612 0.89969 0.88555 0.88439 0.76496 0.91961 0.89859 0.77861 0.93365 0.89841 0.88642 0.88970 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.77 36.01 0.35 -0.79 16 2 C -0.08 -1.21 6.21 -104.16 -0.65 -1.86 16 3 C -0.21 -2.55 10.76 -39.98 -0.43 -2.99 16 4 C 0.02 0.18 11.37 -16.91 -0.19 -0.01 16 5 N -0.43 -5.42 3.16 -120.23 -0.38 -5.80 16 6 C 0.05 0.50 9.61 59.85 0.57 1.08 16 7 C -0.05 -0.85 6.89 -81.98 -0.56 -1.41 16 8 C 0.58 10.49 7.77 -12.86 -0.10 10.39 16 9 O -0.53 -11.02 14.88 5.20 0.08 -10.94 16 10 N -0.72 -12.11 5.16 -61.63 -0.32 -12.43 16 11 C 0.15 2.72 5.77 -4.04 -0.02 2.70 16 12 C 0.13 2.48 2.35 -131.82 -0.31 2.17 16 13 N -0.69 -16.10 5.54 -47.23 -0.26 -16.37 16 14 C -0.24 -6.47 9.20 -15.06 -0.14 -6.61 16 15 H 0.07 1.99 7.63 -52.49 -0.40 1.59 16 16 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 17 N -0.93 -26.83 13.10 55.49 0.73 -26.10 16 18 Si 0.90 22.12 29.57 -169.99 -5.03 17.09 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.19 -3.26 10.11 -26.69 -0.27 -3.53 16 23 C -0.19 -2.94 9.73 -26.69 -0.26 -3.20 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 1.17 6.63 -51.93 -0.34 0.83 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.71 8.13 -51.92 -0.42 0.29 16 31 H 0.10 1.18 5.78 -51.93 -0.30 0.88 16 32 H 0.40 5.80 3.97 -40.82 -0.16 5.64 16 33 H 0.06 1.10 7.88 -51.93 -0.41 0.69 16 34 H 0.08 1.81 7.23 -51.93 -0.38 1.43 16 35 H 0.39 9.53 8.06 -40.82 -0.33 9.20 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 38 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -31.82 334.37 -7.92 -39.74 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -5.68 Total: 14.09 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.10 Total: -4.33 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.23 Total: -60.70 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.82 -7.92 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483729044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.404 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds