Wall clock time and date at job start Mon Mar 30 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39833 * 126.45765 * 2 1 4 4 C 1.35454 * 107.86274 * 180.02562 * 3 2 1 5 5 N 1.35532 * 108.87481 * 0.02562 * 4 3 2 6 6 C 1.46497 * 125.68343 * 179.97438 * 5 4 3 7 7 C 1.37656 * 108.64284 * 0.24109 * 5 4 3 8 8 C 1.46677 * 126.23357 * 179.76074 * 7 5 4 9 9 O 1.21688 * 119.99863 * 185.18635 * 8 7 5 10 10 N 1.34770 * 120.00312 * 5.18264 * 8 7 5 11 11 C 1.46498 * 120.00445 * 182.48434 * 10 8 7 12 12 C 1.52998 * 109.47298 * 181.26083 * 11 10 8 13 13 N 1.46511 * 115.54999 * 271.06194 * 12 11 10 14 14 C 1.36934 * 119.99788 * 303.98506 * 13 12 11 15 15 H 1.07994 * 120.00295 * 355.39575 * 14 13 12 16 16 C 1.38816 * 119.99450 * 175.39781 * 14 13 12 17 17 N 1.31612 * 120.00509 * 11.01050 * 16 14 13 18 18 Si 1.86804 * 119.99825 * 191.01145 * 16 14 13 19 19 H 1.48499 * 109.47362 * 94.74041 * 18 16 14 20 20 H 1.48497 * 109.47122 * 214.74646 * 18 16 14 21 21 H 1.48507 * 109.46814 * 334.74638 * 18 16 14 22 22 C 1.52996 * 117.49981 * 125.39514 * 12 11 10 23 23 C 1.52998 * 117.50186 * 56.73257 * 12 11 10 24 24 H 1.09002 * 109.46645 * 89.97526 * 1 2 3 25 25 H 1.08997 * 109.47451 * 209.97556 * 1 2 3 26 26 H 1.09002 * 109.46889 * 329.97670 * 1 2 3 27 27 H 1.07998 * 126.07094 * 0.03195 * 3 2 1 28 28 H 1.07997 * 125.56415 * 179.97438 * 4 3 2 29 29 H 1.09004 * 109.47015 * 94.49372 * 6 5 4 30 30 H 1.09010 * 109.46915 * 334.50191 * 6 5 4 31 31 H 1.09002 * 109.47669 * 214.50136 * 6 5 4 32 32 H 0.97009 * 119.99918 * 2.49137 * 10 8 7 33 33 H 1.08994 * 109.47131 * 301.26210 * 11 10 8 34 34 H 1.09000 * 109.46578 * 61.26507 * 11 10 8 35 35 H 0.97001 * 119.99672 * 123.97769 * 13 12 11 36 36 H 0.96994 * 120.00479 * 179.97438 * 17 16 14 37 37 H 1.08998 * 117.49661 * 359.97438 * 22 12 11 38 38 H 1.09001 * 117.50261 * 145.02116 * 22 12 11 39 39 H 1.09002 * 117.50113 * 214.98473 * 23 12 11 40 40 H 1.09004 * 117.49486 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6927 -0.0006 5 7 3.6284 -0.6626 -0.0015 6 6 4.8225 -1.5113 -0.0029 7 6 2.3262 -1.1090 -0.0070 8 6 1.8898 -2.5093 -0.0147 9 8 0.7070 -2.7774 -0.1143 10 7 2.7987 -3.4990 0.0885 11 6 2.3686 -4.8980 0.0261 12 6 3.5826 -5.8130 0.1989 13 7 4.2854 -6.1704 -1.0360 14 6 3.6033 -6.7633 -2.0648 15 1 2.5658 -7.0351 -1.9390 16 6 4.2458 -7.0149 -3.2693 17 7 5.5528 -6.8879 -3.3573 18 14 3.2551 -7.5336 -4.7657 19 1 2.9354 -6.3381 -5.5865 20 1 4.0478 -8.4929 -5.5759 21 1 1.9942 -8.1822 -4.3240 22 6 3.5214 -6.8662 1.3070 23 6 4.4234 -5.6397 1.4653 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 2.0137 2.1548 0.0005 28 1 4.4973 1.3251 -0.0011 29 1 5.0727 -1.7881 1.0213 30 1 5.6558 -0.9653 -0.4455 31 1 4.6277 -2.4117 -0.5855 32 1 3.7378 -3.2850 0.2042 33 1 1.6503 -5.0932 0.8224 34 1 1.9021 -5.0919 -0.9397 35 1 5.2337 -5.9870 -1.1247 36 1 6.0017 -7.0641 -4.1988 37 1 2.6165 -6.9070 1.9131 38 1 4.0044 -7.8249 1.1175 39 1 5.4994 -5.7918 1.3799 40 1 4.1119 -4.8734 2.1752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483729044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:40 Heat of formation + Delta-G solvation = 37.850078 kcal Electronic energy + Delta-G solvation = -21731.819523 eV Core-core repulsion = 18548.135235 eV Total energy + Delta-G solvation = -3183.684288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43691 -40.31427 -38.93048 -35.80081 -35.03872 -34.09895 -31.72402 -31.28460 -29.56187 -27.82340 -26.07306 -25.89367 -23.59190 -22.89371 -21.24229 -21.05922 -20.10750 -19.18862 -18.30864 -17.32074 -16.85208 -16.73592 -16.48578 -16.04320 -15.53648 -15.41226 -15.23224 -14.87988 -14.40486 -14.19985 -13.83009 -13.74203 -13.56173 -13.40180 -13.11205 -12.87020 -12.85054 -12.76883 -12.52093 -12.33512 -12.21739 -11.93684 -11.77142 -11.17958 -11.07772 -10.62479 -10.17520 -9.47744 -9.09457 -9.05134 -8.02387 -5.27730 0.46827 1.41980 1.45014 1.51873 1.79901 1.87766 2.13025 2.34719 2.48742 3.01973 3.34121 3.60684 3.69465 3.79381 3.82655 4.11613 4.19976 4.24613 4.29689 4.33769 4.41575 4.58938 4.71657 4.76427 4.88546 4.88924 4.89696 4.99747 5.05616 5.13474 5.16142 5.31693 5.38876 5.50332 5.52598 5.83480 6.00023 6.21637 6.35180 6.53483 7.15130 7.28547 8.00151 8.25200 9.19886 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.004972 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.748386 B = 5630.407684 C = 5956.772503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.096 4.096 3 C -0.225 4.225 4 C 0.039 3.961 5 N -0.430 5.430 6 C 0.045 3.955 7 C -0.097 4.097 8 C 0.576 3.424 9 O -0.575 6.575 10 N -0.714 5.714 11 C 0.157 3.843 12 C 0.101 3.899 13 N -0.696 5.696 14 C -0.235 4.235 15 H 0.069 0.931 16 C -0.061 4.061 17 N -0.958 5.958 18 Si 0.957 3.043 19 H -0.294 1.294 20 H -0.292 1.292 21 H -0.272 1.272 22 C -0.189 4.189 23 C -0.156 4.156 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.212 0.788 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.406 0.594 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.379 0.621 36 H 0.252 0.748 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 15.603 11.369 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.248 4.248 4 C -0.096 4.096 5 N -0.105 5.105 6 C -0.096 4.096 7 C -0.209 4.209 8 C 0.366 3.634 9 O -0.456 6.456 10 N -0.370 5.370 11 C 0.032 3.968 12 C 0.009 3.991 13 N -0.334 5.334 14 C -0.366 4.366 15 H 0.087 0.913 16 C -0.254 4.254 17 N -0.608 5.608 18 Si 0.787 3.213 19 H -0.221 1.221 20 H -0.219 1.219 21 H -0.197 1.197 22 C -0.229 4.229 23 C -0.194 4.194 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.184 0.816 28 H 0.229 0.771 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.089 0.911 32 H 0.248 0.752 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.212 0.788 36 H 0.061 0.939 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.758 15.001 11.161 18.713 hybrid contribution 0.309 -0.699 -1.247 1.463 sum -0.449 14.303 9.913 17.408 Atomic orbital electron populations 1.20263 0.89470 1.02504 1.01826 1.20283 0.96268 0.91720 1.02241 1.21081 0.91861 0.99000 1.12856 1.22706 1.00632 0.82039 1.04263 1.44164 1.04986 1.07398 1.53956 1.22638 0.86225 0.95523 1.05213 1.20184 0.85174 0.92753 1.22758 1.17488 0.85538 0.84240 0.76110 1.90743 1.17847 1.84202 1.52769 1.46430 1.11237 1.05836 1.73490 1.20970 0.95592 0.79464 1.00780 1.20326 0.95703 0.99500 0.83572 1.41822 1.08512 1.70753 1.12355 1.19384 0.94970 1.30646 0.91638 0.91308 1.25350 0.96436 1.03444 1.00216 1.69801 1.07758 1.57380 1.25852 0.85370 0.78302 0.77152 0.80525 1.22140 1.21878 1.19721 1.23475 1.02156 0.94367 1.02938 1.23183 0.98057 1.00631 0.97509 0.92121 0.92811 0.89661 0.81615 0.77139 0.87809 0.85410 0.91107 0.75175 0.91078 0.93886 0.78802 0.93887 0.87744 0.89990 0.88248 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.25 9.77 71.24 0.70 -1.55 16 2 C -0.10 -2.72 6.21 -19.56 -0.12 -2.84 16 3 C -0.22 -4.72 10.76 22.01 0.24 -4.48 16 4 C 0.04 0.70 11.37 83.48 0.95 1.65 16 5 N -0.43 -9.81 3.16 -534.30 -1.69 -11.50 16 6 C 0.04 0.77 9.61 127.77 1.23 2.00 16 7 C -0.10 -3.02 6.89 40.35 0.28 -2.74 16 8 C 0.58 21.22 7.77 86.45 0.67 21.89 16 9 O -0.57 -24.81 14.88 -4.31 -0.06 -24.88 16 10 N -0.71 -24.07 5.16 -467.11 -2.41 -26.48 16 11 C 0.16 5.95 5.77 86.38 0.50 6.45 16 12 C 0.10 3.76 2.35 3.60 0.01 3.77 16 13 N -0.70 -32.95 5.54 -303.34 -1.68 -34.63 16 14 C -0.23 -12.74 9.20 84.03 0.77 -11.97 16 15 H 0.07 3.75 7.63 -2.91 -0.02 3.72 16 16 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 17 N -0.96 -56.39 13.10 21.65 0.28 -56.11 16 18 Si 0.96 46.36 29.57 68.60 2.03 48.39 16 19 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 C -0.19 -6.08 10.11 30.62 0.31 -5.77 16 23 C -0.16 -4.37 9.73 30.62 0.30 -4.07 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.69 6.63 -2.39 -0.02 1.68 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.21 1.76 8.06 -2.91 -0.02 1.73 16 29 H 0.10 1.33 8.14 -2.38 -0.02 1.32 16 30 H 0.13 1.39 8.13 -2.38 -0.02 1.37 16 31 H 0.07 1.64 5.78 -2.39 -0.01 1.63 16 32 H 0.41 11.64 3.97 -92.70 -0.37 11.27 16 33 H 0.07 2.53 7.88 -2.39 -0.02 2.51 16 34 H 0.04 1.96 7.23 -2.39 -0.02 1.94 16 35 H 0.38 18.87 8.06 -92.71 -0.75 18.12 16 36 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.10 2.93 8.04 -2.39 -0.02 2.91 16 38 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -71.66 334.37 2.70 -68.96 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.05 Total: 36.89 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 6.29 Total: -0.64 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -5.50 Total: -128.72 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.88 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -71.66 2.70 -68.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483729044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.806 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds