Wall clock time and date at job start Mon Mar 30 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38352 * 120.34840 * 2 1 4 4 N 1.31924 * 121.07751 * 179.97438 * 3 2 1 5 5 C 1.31702 * 121.88213 * 359.75484 * 4 3 2 6 6 C 1.39518 * 120.56270 * 0.53386 * 5 4 3 7 7 C 1.47836 * 120.55831 * 179.72372 * 6 5 4 8 8 O 1.21551 * 120.00161 * 179.72743 * 7 6 5 9 9 N 1.34777 * 119.99937 * 359.72731 * 7 6 5 10 10 C 1.46506 * 120.00033 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47060 * 35.00669 * 10 9 7 12 12 C 1.52997 * 109.47289 * 275.00400 * 10 9 7 13 13 C 1.53005 * 109.46831 * 155.00073 * 10 9 7 14 14 H 1.08993 * 109.47016 * 295.00161 * 13 10 9 15 15 C 1.53000 * 109.47167 * 55.00496 * 13 10 9 16 16 N 1.46505 * 109.46783 * 175.00421 * 13 10 9 17 17 C 1.36932 * 119.99946 * 155.00475 * 16 13 10 18 18 H 1.07995 * 120.00066 * 359.97438 * 17 16 13 19 19 C 1.38809 * 120.00134 * 179.97438 * 17 16 13 20 20 N 1.31620 * 119.99728 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47221 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47515 * 119.99898 * 21 19 17 24 24 H 1.48503 * 109.47078 * 239.99996 * 21 19 17 25 25 C 1.38359 * 120.34619 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47320 * 270.01583 * 1 2 3 27 27 H 1.09002 * 109.47222 * 30.01892 * 1 2 3 28 28 H 1.09006 * 109.47347 * 150.01531 * 1 2 3 29 29 H 1.08001 * 119.46122 * 359.97438 * 3 2 1 30 30 H 1.07995 * 119.71934 * 180.26508 * 5 4 3 31 31 H 0.97000 * 120.00155 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.46832 * 299.99854 * 12 10 9 33 33 H 1.08996 * 109.46952 * 59.99873 * 12 10 9 34 34 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.47254 * 59.99655 * 15 13 10 36 36 H 1.08992 * 109.46806 * 179.97438 * 15 13 10 37 37 H 1.09001 * 109.46567 * 300.00036 * 15 13 10 38 38 H 0.97004 * 119.99748 * 334.99549 * 16 13 10 39 39 H 0.97005 * 119.99727 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.85437 * 0.03642 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2107 0.0005 5 6 4.2349 0.1013 0.0058 6 6 3.6054 -1.1437 0.0000 7 6 4.4022 -2.3889 -0.0002 8 8 3.8432 -3.4682 -0.0004 9 7 5.7486 -2.3273 -0.0002 10 6 6.5383 -3.5613 0.0001 11 1 6.0252 -4.3213 -0.5892 12 6 6.7073 -4.0583 1.4373 13 6 7.9144 -3.2863 -0.6096 14 1 7.7994 -3.0178 -1.6597 15 6 8.5838 -2.1335 0.1413 16 7 8.7456 -4.4878 -0.5009 17 6 9.7772 -4.6884 -1.3788 18 1 9.9778 -3.9611 -2.1516 19 6 10.5651 -5.8266 -1.2756 20 7 10.3209 -6.7127 -0.3335 21 14 11.9718 -6.1006 -2.4736 22 1 12.0353 -4.9665 -3.4302 23 1 13.2506 -6.1886 -1.7238 24 1 11.7474 -7.3649 -3.2197 25 6 2.2060 -1.1940 0.0005 26 1 -0.3634 0.0003 1.0276 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5136 29 1 1.6629 2.1275 -0.0004 30 1 5.3135 0.1558 0.0104 31 1 6.1947 -1.4660 0.0002 32 1 7.2205 -3.2983 2.0265 33 1 5.7270 -4.2542 1.8715 34 1 7.2952 -4.9761 1.4376 35 1 8.6987 -2.4020 1.1914 36 1 9.5642 -1.9379 -0.2928 37 1 7.9653 -1.2396 0.0604 38 1 8.5653 -5.1412 0.1930 39 1 10.8717 -7.5079 -0.2611 40 1 1.6857 -2.1404 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485134010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:32 Heat of formation + Delta-G solvation = 5.128093 kcal Electronic energy + Delta-G solvation = -21039.044904 eV Core-core repulsion = 17853.941685 eV Total energy + Delta-G solvation = -3185.103220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84833 -39.29084 -36.93556 -34.26665 -33.76272 -32.59923 -31.54415 -29.33607 -28.23679 -27.60756 -25.07932 -24.29899 -23.08096 -22.81886 -20.43147 -19.32927 -17.97526 -17.39761 -17.11360 -16.52802 -15.45265 -15.17009 -14.69383 -14.54141 -14.33938 -14.13499 -13.70575 -13.48072 -13.30795 -13.06646 -12.94841 -12.82107 -12.46767 -12.22116 -12.00562 -11.66521 -11.32572 -10.97303 -10.85410 -10.52685 -10.30665 -10.22367 -10.04783 -9.97947 -9.73488 -9.56740 -9.30000 -8.97214 -8.86546 -7.02826 -5.80478 -3.10121 0.40687 0.89970 2.79781 3.15420 3.41803 3.47636 3.49642 3.62730 4.01068 4.38330 4.51713 4.56109 4.61434 4.65056 4.86003 5.14088 5.20116 5.32992 5.34002 5.44406 5.57286 5.60628 5.62816 5.76565 5.79178 5.86754 6.03502 6.11613 6.25145 6.27359 6.36830 6.42133 6.59318 6.68950 6.86194 7.04641 7.53888 7.58305 7.67490 8.23551 8.37976 9.49413 10.04241 10.39132 11.42147 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038079 B = 0.003251 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.144579 B = 8610.885493 C = 8880.786612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.116 3.884 4 N -0.483 5.483 5 C 0.126 3.874 6 C -0.176 4.176 7 C 0.559 3.441 8 O -0.535 6.535 9 N -0.711 5.711 10 C 0.135 3.865 11 H 0.090 0.910 12 C -0.159 4.159 13 C 0.168 3.832 14 H 0.052 0.948 15 C -0.169 4.169 16 N -0.719 5.719 17 C -0.241 4.241 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.021 4.021 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.397 0.603 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.387 0.613 39 H 0.255 0.745 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.357 15.610 2.496 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.041 4.041 4 N -0.191 5.191 5 C -0.032 4.032 6 C -0.181 4.181 7 C 0.344 3.656 8 O -0.413 6.413 9 N -0.364 5.364 10 C 0.031 3.969 11 H 0.108 0.892 12 C -0.218 4.218 13 C 0.057 3.943 14 H 0.070 0.930 15 C -0.230 4.230 16 N -0.363 5.363 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.047 4.047 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.176 0.824 30 H 0.176 0.824 31 H 0.234 0.766 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.151 15.607 2.345 23.308 hybrid contribution 0.658 -0.778 -0.362 1.081 sum -16.493 14.830 1.983 22.268 Atomic orbital electron populations 1.20737 0.89631 1.03450 1.02883 1.20949 0.98018 0.93772 1.02094 1.22891 0.89951 0.97656 0.93620 1.67697 1.08041 1.30965 1.12374 1.22994 1.00344 0.86851 0.93026 1.21124 0.95232 0.95061 1.06654 1.18023 0.82489 0.88199 0.76898 1.90783 1.71133 1.29529 1.49815 1.46194 1.05443 1.10715 1.74024 1.21404 0.92370 0.85424 0.97696 0.89163 1.22145 1.01473 1.02314 0.95844 1.20366 0.87890 0.89047 0.97014 0.92955 1.22549 1.01119 0.97593 1.01695 1.42457 1.34585 1.21162 1.38063 1.19265 1.05719 1.03872 1.08303 0.91044 1.24749 0.99906 0.97196 0.98974 1.69670 1.41622 1.11994 1.34639 0.86110 0.82112 0.77623 0.80274 1.20547 1.21862 1.21845 1.21661 0.92530 0.99034 0.91476 0.90652 0.90944 0.90968 0.82372 0.82373 0.76609 0.92447 0.93062 0.90337 0.92705 0.92228 0.94976 0.77751 0.93467 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.03 36.01 0.36 -0.23 16 2 C -0.15 -1.24 5.89 -104.54 -0.62 -1.86 16 3 C 0.12 1.01 10.85 -17.47 -0.19 0.82 16 4 N -0.48 -5.24 10.35 -12.91 -0.13 -5.37 16 5 C 0.13 1.35 10.71 -17.13 -0.18 1.17 16 6 C -0.18 -2.11 5.89 -104.82 -0.62 -2.73 16 7 C 0.56 8.23 7.75 -12.33 -0.10 8.13 16 8 O -0.53 -9.74 16.08 5.32 0.09 -9.66 16 9 N -0.71 -9.87 4.94 -54.75 -0.27 -10.14 16 10 C 0.14 2.31 2.62 -67.93 -0.18 2.13 16 11 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 12 C -0.16 -2.67 9.00 37.16 0.33 -2.34 16 13 C 0.17 3.17 2.93 -67.92 -0.20 2.97 16 14 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 15 C -0.17 -2.78 9.01 37.16 0.33 -2.44 16 16 N -0.72 -17.40 5.03 -53.42 -0.27 -17.67 16 17 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 C -0.02 -0.22 9.39 -38.87 -0.37 -0.59 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 28 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.16 1.37 6.42 -52.49 -0.34 1.03 16 31 H 0.40 4.51 4.64 -40.82 -0.19 4.32 16 32 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.46 6.29 -51.93 -0.33 1.14 16 35 H 0.05 0.91 6.57 -51.93 -0.34 0.57 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.03 0.40 6.29 -51.93 -0.33 0.08 16 38 H 0.39 9.89 5.77 -40.82 -0.24 9.65 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.15 1.54 7.74 -52.49 -0.41 1.13 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -32.38 330.59 -6.96 -39.33 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.39 Total: 10.46 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.66 Total: -2.05 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.05 Total: -60.20 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.38 -6.96 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485134010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.461 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds