Wall clock time and date at job start Mon Mar 30 2020 01:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38352 * 120.34840 * 2 1 4 4 N 1.31924 * 121.07751 * 179.97438 * 3 2 1 5 5 C 1.31702 * 121.88213 * 359.75484 * 4 3 2 6 6 C 1.39518 * 120.56270 * 0.53386 * 5 4 3 7 7 C 1.47836 * 120.55831 * 179.72372 * 6 5 4 8 8 O 1.21551 * 120.00161 * 179.72743 * 7 6 5 9 9 N 1.34777 * 119.99937 * 359.72731 * 7 6 5 10 10 C 1.46506 * 120.00033 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47060 * 35.00669 * 10 9 7 12 12 C 1.52997 * 109.47289 * 275.00400 * 10 9 7 13 13 C 1.53005 * 109.46831 * 155.00073 * 10 9 7 14 14 H 1.08993 * 109.47016 * 295.00161 * 13 10 9 15 15 C 1.53000 * 109.47167 * 55.00496 * 13 10 9 16 16 N 1.46505 * 109.46783 * 175.00421 * 13 10 9 17 17 C 1.36932 * 119.99946 * 155.00475 * 16 13 10 18 18 H 1.07995 * 120.00066 * 359.97438 * 17 16 13 19 19 C 1.38809 * 120.00134 * 179.97438 * 17 16 13 20 20 N 1.31620 * 119.99728 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47221 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47515 * 119.99898 * 21 19 17 24 24 H 1.48503 * 109.47078 * 239.99996 * 21 19 17 25 25 C 1.38359 * 120.34619 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47320 * 270.01583 * 1 2 3 27 27 H 1.09002 * 109.47222 * 30.01892 * 1 2 3 28 28 H 1.09006 * 109.47347 * 150.01531 * 1 2 3 29 29 H 1.08001 * 119.46122 * 359.97438 * 3 2 1 30 30 H 1.07995 * 119.71934 * 180.26508 * 5 4 3 31 31 H 0.97000 * 120.00155 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.46832 * 299.99854 * 12 10 9 33 33 H 1.08996 * 109.46952 * 59.99873 * 12 10 9 34 34 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.47254 * 59.99655 * 15 13 10 36 36 H 1.08992 * 109.46806 * 179.97438 * 15 13 10 37 37 H 1.09001 * 109.46567 * 300.00036 * 15 13 10 38 38 H 0.97004 * 119.99748 * 334.99549 * 16 13 10 39 39 H 0.97005 * 119.99727 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.85437 * 0.03642 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2107 0.0005 5 6 4.2349 0.1013 0.0058 6 6 3.6054 -1.1437 0.0000 7 6 4.4022 -2.3889 -0.0002 8 8 3.8432 -3.4682 -0.0004 9 7 5.7486 -2.3273 -0.0002 10 6 6.5383 -3.5613 0.0001 11 1 6.0252 -4.3213 -0.5892 12 6 6.7073 -4.0583 1.4373 13 6 7.9144 -3.2863 -0.6096 14 1 7.7994 -3.0178 -1.6597 15 6 8.5838 -2.1335 0.1413 16 7 8.7456 -4.4878 -0.5009 17 6 9.7772 -4.6884 -1.3788 18 1 9.9778 -3.9611 -2.1516 19 6 10.5651 -5.8266 -1.2756 20 7 10.3209 -6.7127 -0.3335 21 14 11.9718 -6.1006 -2.4736 22 1 12.0353 -4.9665 -3.4302 23 1 13.2506 -6.1886 -1.7238 24 1 11.7474 -7.3649 -3.2197 25 6 2.2060 -1.1940 0.0005 26 1 -0.3634 0.0003 1.0276 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5136 29 1 1.6629 2.1275 -0.0004 30 1 5.3135 0.1558 0.0104 31 1 6.1947 -1.4660 0.0002 32 1 7.2205 -3.2983 2.0265 33 1 5.7270 -4.2542 1.8715 34 1 7.2952 -4.9761 1.4376 35 1 8.6987 -2.4020 1.1914 36 1 9.5642 -1.9379 -0.2928 37 1 7.9653 -1.2396 0.0604 38 1 8.5653 -5.1412 0.1930 39 1 10.8717 -7.5079 -0.2611 40 1 1.6857 -2.1404 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485134010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:31 Heat of formation + Delta-G solvation = -17.076584 kcal Electronic energy + Delta-G solvation = -21040.007772 eV Core-core repulsion = 17853.941685 eV Total energy + Delta-G solvation = -3186.066087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77298 -40.39684 -38.42414 -35.71909 -34.66640 -33.86468 -32.94857 -30.86246 -29.81967 -28.20463 -26.25214 -25.99822 -24.40041 -23.75219 -21.56560 -20.76213 -19.52246 -18.82152 -17.95154 -17.46648 -16.70232 -16.63077 -16.18995 -15.93407 -15.61472 -15.25991 -15.00906 -14.67678 -14.36379 -14.14633 -13.94404 -13.62802 -13.48646 -13.46228 -13.11255 -13.00110 -12.83743 -12.80490 -12.66317 -12.07962 -12.04708 -11.68551 -11.62639 -11.33471 -10.96977 -10.89034 -10.49571 -10.23072 -9.94336 -9.03661 -7.93911 -5.22722 -0.41776 0.14087 1.48333 1.49122 1.58759 1.76297 1.97697 2.57883 2.78272 3.26717 3.40147 3.63424 3.78625 3.80288 3.87469 3.91897 3.97520 4.06015 4.18493 4.30956 4.50271 4.58939 4.67658 4.76441 4.84141 4.85462 4.94527 4.95489 5.01967 5.16978 5.19248 5.23241 5.24883 5.44134 5.53926 5.58894 5.62950 6.28397 6.42785 6.80364 7.09368 7.35090 8.08828 8.32070 9.29853 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038079 B = 0.003251 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.144579 B = 8610.885493 C = 8880.786612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.500 5.500 5 C 0.127 3.873 6 C -0.193 4.193 7 C 0.560 3.440 8 O -0.577 6.577 9 N -0.699 5.699 10 C 0.149 3.851 11 H 0.060 0.940 12 C -0.150 4.150 13 C 0.165 3.835 14 H 0.048 0.952 15 C -0.160 4.160 16 N -0.734 5.734 17 C -0.236 4.236 18 H 0.078 0.922 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.294 1.294 24 H -0.297 1.297 25 C -0.034 4.034 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.193 0.807 30 H 0.176 0.824 31 H 0.412 0.588 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.377 0.623 39 H 0.250 0.750 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.381 18.615 2.219 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.037 4.037 4 N -0.208 5.208 5 C -0.031 4.031 6 C -0.198 4.198 7 C 0.348 3.652 8 O -0.458 6.458 9 N -0.352 5.352 10 C 0.043 3.957 11 H 0.078 0.922 12 C -0.209 4.209 13 C 0.056 3.944 14 H 0.066 0.934 15 C -0.220 4.220 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.096 0.904 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.224 1.224 25 C -0.060 4.060 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.210 0.790 30 H 0.193 0.807 31 H 0.252 0.748 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.211 0.789 39 H 0.059 0.941 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.187 18.697 2.053 26.164 hybrid contribution 0.815 -1.593 -0.280 1.811 sum -17.372 17.104 1.773 24.443 Atomic orbital electron populations 1.20827 0.87248 1.04580 1.03923 1.21249 0.99630 0.92713 1.00478 1.23507 0.89515 0.99054 0.91635 1.67781 1.09151 1.30738 1.13093 1.23201 1.01243 0.86233 0.92458 1.20906 0.95504 0.94070 1.09294 1.18446 0.82459 0.88701 0.75612 1.90762 1.71846 1.31363 1.51797 1.45927 1.05246 1.10197 1.73828 1.20962 0.91393 0.86107 0.97192 0.92153 1.22036 1.01226 1.01732 0.95861 1.20534 0.88244 0.88143 0.97452 0.93361 1.22381 1.00839 0.97959 1.00792 1.42656 1.34821 1.22741 1.37405 1.19643 1.05656 1.03427 1.08081 0.90398 1.25536 1.02802 0.97489 1.01007 1.69823 1.42949 1.12548 1.36711 0.85097 0.78957 0.77467 0.78374 1.18920 1.22129 1.22448 1.21807 0.92329 0.99946 0.91959 0.89514 0.88788 0.90926 0.79037 0.80697 0.74843 0.90733 0.93000 0.92689 0.92818 0.93605 0.90551 0.78918 0.94085 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.03 71.24 0.71 -0.13 16 2 C -0.14 -2.01 5.89 -19.81 -0.12 -2.13 16 3 C 0.12 1.70 10.85 84.71 0.92 2.62 16 4 N -0.50 -9.47 10.35 -194.76 -2.01 -11.49 16 5 C 0.13 2.45 10.71 85.02 0.91 3.36 16 6 C -0.19 -4.43 5.89 -20.00 -0.12 -4.55 16 7 C 0.56 16.40 7.75 86.78 0.67 17.08 16 8 O -0.58 -21.60 16.08 -3.88 -0.06 -21.66 16 9 N -0.70 -18.72 4.94 -445.40 -2.20 -20.93 16 10 C 0.15 5.10 2.62 44.99 0.12 5.22 16 11 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 12 C -0.15 -5.08 9.00 71.98 0.65 -4.43 16 13 C 0.17 6.19 2.93 44.99 0.13 6.32 16 14 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 15 C -0.16 -4.93 9.01 71.98 0.65 -4.28 16 16 N -0.73 -36.02 5.03 -322.94 -1.63 -37.64 16 17 C -0.24 -12.85 9.93 84.03 0.83 -12.02 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 21 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 C -0.03 -0.70 9.39 22.73 0.21 -0.48 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.36 8.09 -2.39 -0.02 0.34 16 28 H 0.07 0.59 8.09 -2.38 -0.02 0.57 16 29 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.18 2.54 6.42 -2.91 -0.02 2.52 16 31 H 0.41 8.38 4.64 -92.71 -0.43 7.95 16 32 H 0.07 2.23 6.56 -2.39 -0.02 2.22 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 2.13 6.29 -2.39 -0.02 2.11 16 35 H 0.05 1.68 6.57 -2.39 -0.02 1.66 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.66 6.29 -2.39 -0.02 1.64 16 38 H 0.38 19.89 5.77 -92.71 -0.54 19.35 16 39 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 40 H 0.14 2.98 7.74 -2.91 -0.02 2.95 16 Total: -1.00 -71.40 330.59 2.55 -68.85 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.10 Total: 31.05 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 6.04 Total: 2.72 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -5.56 Total: -128.96 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.40 2.55 -68.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485134010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.769 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds