Wall clock time and date at job start Mon Mar 30 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38353 * 120.34939 * 2 1 4 4 N 1.31924 * 121.08336 * 180.02562 * 3 2 1 5 5 C 1.31697 * 121.87679 * 359.65645 * 4 3 2 6 6 C 1.39520 * 120.56464 * 0.62982 * 5 4 3 7 7 C 1.47837 * 120.55784 * 179.68652 * 6 5 4 8 8 O 1.21559 * 120.00221 * 179.72183 * 7 6 5 9 9 N 1.34774 * 120.00059 * 359.72015 * 7 6 5 10 10 C 1.46507 * 120.00020 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.47109 * 325.00326 * 10 9 7 12 12 C 1.53006 * 109.46661 * 85.00514 * 10 9 7 13 13 C 1.52997 * 109.46993 * 204.99906 * 10 9 7 14 14 H 1.09005 * 109.47159 * 300.00253 * 13 10 9 15 15 C 1.52999 * 109.47264 * 60.00253 * 13 10 9 16 16 N 1.46498 * 109.47167 * 180.02562 * 13 10 9 17 17 C 1.36935 * 120.00239 * 154.99975 * 16 13 10 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 C 1.38361 * 120.35054 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46983 * 270.02223 * 1 2 3 27 27 H 1.09000 * 109.47048 * 30.02292 * 1 2 3 28 28 H 1.09000 * 109.46939 * 150.01970 * 1 2 3 29 29 H 1.08010 * 119.45699 * 359.97406 * 3 2 1 30 30 H 1.07999 * 119.71463 * 180.31723 * 5 4 3 31 31 H 0.97004 * 120.00037 * 0.02562 * 9 7 6 32 32 H 1.08993 * 109.47512 * 60.00060 * 12 10 9 33 33 H 1.09003 * 109.46879 * 180.02562 * 12 10 9 34 34 H 1.09004 * 109.46812 * 299.99473 * 12 10 9 35 35 H 1.09005 * 109.47033 * 59.99923 * 15 13 10 36 36 H 1.08994 * 109.47214 * 179.97438 * 15 13 10 37 37 H 1.08994 * 109.47102 * 299.99987 * 15 13 10 38 38 H 0.97004 * 119.99747 * 335.00715 * 16 13 10 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 40 40 H 1.07995 * 120.85257 * 0.04306 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1015 0.0057 6 6 3.6054 -1.1436 -0.0002 7 6 4.4023 -2.3888 -0.0002 8 8 3.8433 -3.4682 -0.0002 9 7 5.7487 -2.3272 -0.0002 10 6 6.5384 -3.5612 -0.0008 11 1 6.0253 -4.3212 0.5882 12 6 6.7074 -4.0577 -1.4382 13 6 7.9145 -3.2862 0.6088 14 1 8.4276 -2.5261 0.0196 15 6 7.7456 -2.7896 2.0460 16 7 8.7044 -4.5200 0.6077 17 6 10.0723 -4.4572 0.6075 18 1 10.5689 -3.4980 0.6086 19 6 10.8209 -5.6261 0.6059 20 7 10.2157 -6.7950 0.6100 21 14 12.6869 -5.5405 0.6064 22 1 13.2457 -6.9164 0.6112 23 1 13.1498 -4.8225 -0.6084 24 1 13.1487 -4.8145 1.8166 25 6 2.2061 -1.1940 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6628 2.1275 -0.0004 30 1 5.3135 0.1561 0.0102 31 1 6.1948 -1.4658 0.0001 32 1 7.2205 -3.2977 -2.0272 33 1 7.2946 -4.9761 -1.4386 34 1 5.7270 -4.2536 -1.8725 35 1 7.2325 -3.5497 2.6352 36 1 8.7259 -2.5941 2.4805 37 1 7.1580 -1.8715 2.0465 38 1 8.2585 -5.3814 0.6069 39 1 9.2467 -6.8396 0.6101 40 1 1.6859 -2.1404 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485134011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:34 Heat of formation + Delta-G solvation = -21.237696 kcal Electronic energy + Delta-G solvation = -21066.873059 eV Core-core repulsion = 17880.626532 eV Total energy + Delta-G solvation = -3186.246526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79862 -40.41195 -38.42005 -35.96783 -34.70845 -33.92195 -32.98706 -30.90718 -29.99356 -28.22292 -25.95225 -25.81437 -24.11562 -23.73707 -21.73381 -21.51061 -19.52248 -18.92982 -17.99800 -17.64405 -16.84160 -16.58333 -16.22521 -15.78540 -15.47946 -15.20844 -15.14378 -14.74569 -14.42496 -14.28249 -14.14708 -13.67151 -13.54959 -13.47596 -13.26770 -12.94603 -12.83084 -12.61518 -12.49722 -12.30564 -11.88170 -11.69474 -11.45697 -11.20819 -10.97826 -10.91645 -10.52181 -10.28940 -9.97365 -9.13141 -8.35382 -5.30627 -0.44569 0.11733 1.60243 1.70040 1.72646 1.85698 1.91315 2.74265 2.75763 3.23631 3.43478 3.58854 3.66401 3.75453 3.77490 3.85281 3.89881 4.07832 4.15563 4.22161 4.46252 4.48893 4.64865 4.73571 4.76056 4.82102 4.83469 4.90844 4.96045 5.04756 5.15198 5.19058 5.22038 5.36910 5.41359 5.56464 5.63647 6.38027 6.51506 6.78089 7.03870 7.10251 7.98889 8.11273 9.16099 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041851 B = 0.003257 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.872472 B = 8595.831314 C = 8944.722691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.500 5.500 5 C 0.127 3.873 6 C -0.192 4.192 7 C 0.563 3.437 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.150 3.850 11 H 0.063 0.937 12 C -0.143 4.143 13 C 0.173 3.827 14 H 0.062 0.938 15 C -0.155 4.155 16 N -0.742 5.742 17 C -0.322 4.322 18 H 0.072 0.928 19 C -0.106 4.106 20 N -0.978 5.978 21 Si 1.127 2.873 22 H -0.297 1.297 23 H -0.276 1.276 24 H -0.278 1.278 25 C -0.034 4.034 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.193 0.807 30 H 0.176 0.824 31 H 0.413 0.587 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.358 0.642 39 H 0.243 0.757 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.323 19.060 -1.934 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.037 4.037 4 N -0.208 5.208 5 C -0.031 4.031 6 C -0.198 4.198 7 C 0.350 3.650 8 O -0.457 6.457 9 N -0.349 5.349 10 C 0.044 3.956 11 H 0.081 0.919 12 C -0.202 4.202 13 C 0.064 3.936 14 H 0.080 0.920 15 C -0.215 4.215 16 N -0.384 5.384 17 C -0.453 4.453 18 H 0.090 0.910 19 C -0.297 4.297 20 N -0.626 5.626 21 Si 0.952 3.048 22 H -0.224 1.224 23 H -0.202 1.202 24 H -0.205 1.205 25 C -0.060 4.060 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.210 0.790 30 H 0.193 0.807 31 H 0.251 0.749 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.190 0.810 39 H 0.054 0.946 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.732 18.435 -1.945 24.972 hybrid contribution -1.596 -0.474 0.116 1.669 sum -18.327 17.961 -1.829 25.726 Atomic orbital electron populations 1.20828 0.87239 1.04611 1.03910 1.21250 0.99638 0.92710 1.00468 1.23512 0.89513 0.99066 0.91586 1.67784 1.09155 1.30767 1.13101 1.23208 1.01257 0.86224 0.92397 1.20886 0.95473 0.94025 1.09382 1.18407 0.82303 0.88711 0.75535 1.90764 1.71794 1.31356 1.51823 1.45737 1.05294 1.10011 1.73859 1.20962 0.91334 0.86435 0.96850 0.91910 1.21934 1.00812 1.01613 0.95813 1.20496 0.89151 0.89115 0.94821 0.92041 1.22298 1.00785 1.00388 0.98019 1.42475 1.03000 1.02930 1.90002 1.20324 0.83943 0.94944 1.46131 0.91039 1.27134 1.10266 0.91428 1.00862 1.70990 1.09456 1.25736 1.56457 0.82637 0.69926 0.75125 0.77140 1.22388 1.20231 1.20466 1.21805 0.92333 0.99942 0.91954 0.89570 0.88754 0.90884 0.79045 0.80664 0.74883 0.91589 0.93048 0.93057 0.94878 0.93810 0.90708 0.80965 0.94627 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.03 71.23 0.71 -0.11 16 2 C -0.14 -1.99 5.89 -19.81 -0.12 -2.10 16 3 C 0.12 1.69 10.85 84.71 0.92 2.61 16 4 N -0.50 -9.42 10.35 -194.75 -2.01 -11.43 16 5 C 0.13 2.42 10.71 85.02 0.91 3.33 16 6 C -0.19 -4.35 5.89 -20.00 -0.12 -4.47 16 7 C 0.56 16.13 7.75 86.78 0.67 16.81 16 8 O -0.58 -21.19 16.08 -3.90 -0.06 -21.25 16 9 N -0.70 -18.31 4.34 -445.40 -1.93 -20.25 16 10 C 0.15 5.06 2.21 44.99 0.10 5.16 16 11 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 12 C -0.14 -4.95 9.33 71.98 0.67 -4.28 16 13 C 0.17 6.46 2.52 44.99 0.11 6.58 16 14 H 0.06 2.22 8.08 -2.38 -0.02 2.20 16 15 C -0.16 -5.30 9.34 71.98 0.67 -4.63 16 16 N -0.74 -36.18 4.43 -322.94 -1.43 -37.61 16 17 C -0.32 -17.49 9.93 84.03 0.83 -16.66 16 18 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 19 C -0.11 -6.07 5.50 84.86 0.47 -5.60 16 20 N -0.98 -61.33 13.70 21.65 0.30 -61.03 16 21 Si 1.13 51.45 29.92 68.60 2.05 53.50 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 C -0.03 -0.68 9.39 22.73 0.21 -0.47 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.34 8.09 -2.39 -0.02 0.32 16 28 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 29 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.18 2.51 6.42 -2.91 -0.02 2.49 16 31 H 0.41 8.18 6.45 -92.71 -0.60 7.59 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.05 7.44 -2.39 -0.02 2.03 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.03 1.20 8.14 -2.38 -0.02 1.19 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.97 7.44 -2.39 -0.02 1.95 16 38 H 0.36 18.80 6.41 -92.71 -0.59 18.21 16 39 H 0.24 15.28 6.77 -92.71 -0.63 14.65 16 40 H 0.14 2.93 7.74 -2.91 -0.02 2.91 16 Total: -1.00 -72.93 336.59 2.97 -69.96 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.00 Total: 31.96 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.05 Total: -3.85 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -5.08 Total: -130.32 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.25 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -72.93 2.97 -69.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485134011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.727 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds