Wall clock time and date at job start Mon Mar 30 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38354 * 120.34671 * 2 1 4 4 N 1.31921 * 121.07537 * 180.02562 * 3 2 1 5 5 C 1.31694 * 121.88574 * 359.65155 * 4 3 2 6 6 C 1.39528 * 120.55900 * 0.63270 * 5 4 3 7 7 C 1.47839 * 120.55571 * 179.67673 * 6 5 4 8 8 O 1.21553 * 119.99919 * 179.72410 * 7 6 5 9 9 N 1.34781 * 119.99998 * 359.73094 * 7 6 5 10 10 C 1.46499 * 119.99668 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47279 * 324.99520 * 10 9 7 12 12 C 1.53001 * 109.47235 * 84.99985 * 10 9 7 13 13 C 1.53004 * 109.47047 * 204.99720 * 10 9 7 14 14 H 1.08995 * 109.47216 * 65.00012 * 13 10 9 15 15 C 1.52999 * 109.47083 * 305.00007 * 13 10 9 16 16 N 1.46498 * 109.47065 * 184.99901 * 13 10 9 17 17 C 1.36943 * 119.99752 * 204.72207 * 16 13 10 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 13 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 13 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.38349 * 120.34712 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46971 * 270.02163 * 1 2 3 27 27 H 1.08997 * 109.47238 * 30.02070 * 1 2 3 28 28 H 1.08994 * 109.47304 * 150.02826 * 1 2 3 29 29 H 1.07995 * 119.46213 * 359.97438 * 3 2 1 30 30 H 1.08001 * 119.72351 * 180.31490 * 5 4 3 31 31 H 0.96996 * 120.00344 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.46997 * 180.02562 * 12 10 9 33 33 H 1.09000 * 109.46522 * 299.99301 * 12 10 9 34 34 H 1.08994 * 109.47269 * 59.99476 * 12 10 9 35 35 H 1.08995 * 109.47098 * 300.00077 * 15 13 10 36 36 H 1.09003 * 109.47054 * 59.99725 * 15 13 10 37 37 H 1.08996 * 109.47245 * 179.97438 * 15 13 10 38 38 H 0.97001 * 120.00384 * 25.00562 * 16 13 10 39 39 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.85746 * 0.04011 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5251 1.2108 -0.0005 5 6 4.2349 0.1015 0.0058 6 6 3.6053 -1.1436 0.0000 7 6 4.4023 -2.3888 -0.0001 8 8 3.8432 -3.4682 -0.0001 9 7 5.7487 -2.3272 -0.0001 10 6 6.5383 -3.5612 0.0003 11 1 6.0251 -4.3208 0.5901 12 6 6.7074 -4.0590 -1.4365 13 6 7.9144 -3.2858 0.6098 14 1 7.7995 -3.0167 1.6597 15 6 8.5838 -2.1334 -0.1418 16 7 8.7456 -4.4874 0.5019 17 6 9.7807 -4.6846 1.3765 18 1 9.9815 -3.9566 2.1486 19 6 10.5719 -5.8203 1.2707 20 7 10.3274 -6.7072 0.3294 21 14 11.9834 -6.0898 2.4641 22 1 11.4549 -6.1487 3.8506 23 1 12.6685 -7.3669 2.1403 24 1 12.9494 -4.9677 2.3497 25 6 2.2060 -1.1939 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6629 2.1274 -0.0004 30 1 5.3136 0.1560 0.0103 31 1 6.1948 -1.4660 -0.0004 32 1 7.2945 -4.9774 -1.4361 33 1 5.7270 -4.2553 -1.8707 34 1 7.2205 -3.2995 -2.0262 35 1 8.6987 -2.4026 -1.1917 36 1 7.9653 -1.2395 -0.0615 37 1 9.5639 -1.9370 0.2927 38 1 8.5653 -5.1412 -0.1916 39 1 10.8801 -7.5010 0.2557 40 1 1.6858 -2.1404 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485134012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:38 Heat of formation + Delta-G solvation = 5.285421 kcal Electronic energy + Delta-G solvation = -21038.861660 eV Core-core repulsion = 17853.765263 eV Total energy + Delta-G solvation = -3185.096397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84798 -39.29010 -36.93349 -34.26519 -33.76115 -32.59753 -31.54198 -29.33407 -28.23260 -27.60732 -25.07836 -24.29614 -23.07905 -22.81546 -20.43019 -19.32687 -17.97385 -17.39470 -17.11314 -16.52676 -15.44691 -15.17373 -14.69343 -14.53411 -14.33336 -14.14565 -13.70031 -13.47825 -13.30938 -13.07785 -12.94283 -12.80992 -12.46578 -12.22116 -12.00091 -11.66362 -11.32630 -10.95878 -10.83370 -10.51926 -10.32538 -10.24202 -10.04778 -10.00763 -9.72612 -9.56419 -9.29882 -8.95916 -8.86366 -7.02673 -5.79912 -3.09687 0.40724 0.90082 2.79853 3.15518 3.42823 3.47479 3.48265 3.62811 4.01130 4.38392 4.51774 4.56369 4.61520 4.65146 4.86066 5.14175 5.20253 5.33115 5.34095 5.44551 5.57382 5.60969 5.62912 5.76645 5.79425 5.86820 6.03713 6.11840 6.25286 6.27459 6.37122 6.42274 6.59536 6.69207 6.86388 7.04906 7.53989 7.58415 7.66707 8.23643 8.38612 9.49797 10.04647 10.39537 11.42593 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038130 B = 0.003251 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.162106 B = 8611.770901 C = 8883.885960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.116 3.884 4 N -0.483 5.483 5 C 0.126 3.874 6 C -0.176 4.176 7 C 0.559 3.441 8 O -0.535 6.535 9 N -0.711 5.711 10 C 0.135 3.865 11 H 0.090 0.910 12 C -0.159 4.159 13 C 0.168 3.832 14 H 0.052 0.948 15 C -0.169 4.169 16 N -0.719 5.719 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.021 4.021 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.397 0.603 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.031 0.969 37 H 0.059 0.941 38 H 0.387 0.613 39 H 0.257 0.743 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 15.532 -2.443 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.041 4.041 4 N -0.191 5.191 5 C -0.032 4.032 6 C -0.181 4.181 7 C 0.344 3.656 8 O -0.413 6.413 9 N -0.364 5.364 10 C 0.031 3.969 11 H 0.108 0.892 12 C -0.218 4.218 13 C 0.057 3.943 14 H 0.070 0.930 15 C -0.230 4.230 16 N -0.362 5.362 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.047 4.047 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.176 0.824 30 H 0.176 0.824 31 H 0.234 0.766 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.223 0.777 39 H 0.066 0.934 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.135 15.512 -2.311 23.229 hybrid contribution 0.664 -0.750 0.383 1.073 sum -16.471 14.762 -1.928 22.202 Atomic orbital electron populations 1.20736 0.89631 1.03424 1.02909 1.20948 0.98019 0.93773 1.02093 1.22890 0.89950 0.97655 0.93622 1.67691 1.08042 1.30973 1.12374 1.22996 1.00345 0.86849 0.93023 1.21127 0.95232 0.95062 1.06652 1.18025 0.82488 0.88199 0.76897 1.90784 1.71132 1.29529 1.49816 1.46191 1.05442 1.10716 1.74023 1.21400 0.92368 0.85419 0.97698 0.89162 1.22145 1.01476 1.02303 0.95848 1.20363 0.87904 0.89035 0.97004 0.92967 1.22552 1.01122 0.97598 1.01697 1.42440 1.34397 1.21120 1.38287 1.19178 1.05583 1.04042 1.08523 0.91152 1.24746 0.99843 0.97204 0.98956 1.69649 1.41620 1.12047 1.34654 0.86253 0.82190 0.77065 0.80559 1.21235 1.21682 1.21264 1.21657 0.92530 0.99034 0.91480 0.90633 0.90952 0.90980 0.82374 0.82370 0.76608 0.90339 0.93069 0.92442 0.92705 0.94990 0.92233 0.77747 0.93358 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.03 36.01 0.36 -0.23 16 2 C -0.15 -1.24 5.89 -104.54 -0.62 -1.86 16 3 C 0.12 1.01 10.85 -17.47 -0.19 0.82 16 4 N -0.48 -5.24 10.35 -12.91 -0.13 -5.38 16 5 C 0.13 1.35 10.71 -17.13 -0.18 1.17 16 6 C -0.18 -2.11 5.89 -104.82 -0.62 -2.73 16 7 C 0.56 8.23 7.75 -12.33 -0.10 8.14 16 8 O -0.53 -9.75 16.08 5.32 0.09 -9.66 16 9 N -0.71 -9.88 4.94 -54.75 -0.27 -10.15 16 10 C 0.14 2.31 2.62 -67.93 -0.18 2.13 16 11 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 12 C -0.16 -2.67 9.00 37.16 0.33 -2.34 16 13 C 0.17 3.18 2.93 -67.93 -0.20 2.98 16 14 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 15 C -0.17 -2.78 9.00 37.16 0.33 -2.45 16 16 N -0.72 -17.42 5.03 -53.43 -0.27 -17.69 16 17 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.02 -0.22 9.39 -38.87 -0.37 -0.59 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 28 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.16 1.37 6.42 -52.49 -0.34 1.03 16 31 H 0.40 4.51 4.64 -40.82 -0.19 4.32 16 32 H 0.08 1.47 6.29 -51.93 -0.33 1.14 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 35 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 36 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.39 9.90 5.77 -40.82 -0.24 9.66 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.15 1.54 7.74 -52.49 -0.41 1.13 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -32.34 330.59 -6.96 -39.30 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.39 Total: 10.57 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.66 Total: -2.07 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.05 Total: -60.25 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.34 -6.96 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485134012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.588 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds