Wall clock time and date at job start Mon Mar 30 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38354 * 120.34671 * 2 1 4 4 N 1.31921 * 121.07537 * 180.02562 * 3 2 1 5 5 C 1.31694 * 121.88574 * 359.65155 * 4 3 2 6 6 C 1.39528 * 120.55900 * 0.63270 * 5 4 3 7 7 C 1.47839 * 120.55571 * 179.67673 * 6 5 4 8 8 O 1.21553 * 119.99919 * 179.72410 * 7 6 5 9 9 N 1.34781 * 119.99998 * 359.73094 * 7 6 5 10 10 C 1.46499 * 119.99668 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47279 * 324.99520 * 10 9 7 12 12 C 1.53001 * 109.47235 * 84.99985 * 10 9 7 13 13 C 1.53004 * 109.47047 * 204.99720 * 10 9 7 14 14 H 1.08995 * 109.47216 * 65.00012 * 13 10 9 15 15 C 1.52999 * 109.47083 * 305.00007 * 13 10 9 16 16 N 1.46498 * 109.47065 * 184.99901 * 13 10 9 17 17 C 1.36943 * 119.99752 * 204.72207 * 16 13 10 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 13 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 13 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.38349 * 120.34712 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46971 * 270.02163 * 1 2 3 27 27 H 1.08997 * 109.47238 * 30.02070 * 1 2 3 28 28 H 1.08994 * 109.47304 * 150.02826 * 1 2 3 29 29 H 1.07995 * 119.46213 * 359.97438 * 3 2 1 30 30 H 1.08001 * 119.72351 * 180.31490 * 5 4 3 31 31 H 0.96996 * 120.00344 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.46997 * 180.02562 * 12 10 9 33 33 H 1.09000 * 109.46522 * 299.99301 * 12 10 9 34 34 H 1.08994 * 109.47269 * 59.99476 * 12 10 9 35 35 H 1.08995 * 109.47098 * 300.00077 * 15 13 10 36 36 H 1.09003 * 109.47054 * 59.99725 * 15 13 10 37 37 H 1.08996 * 109.47245 * 179.97438 * 15 13 10 38 38 H 0.97001 * 120.00384 * 25.00562 * 16 13 10 39 39 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.85746 * 0.04011 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5251 1.2108 -0.0005 5 6 4.2349 0.1015 0.0058 6 6 3.6053 -1.1436 0.0000 7 6 4.4023 -2.3888 -0.0001 8 8 3.8432 -3.4682 -0.0001 9 7 5.7487 -2.3272 -0.0001 10 6 6.5383 -3.5612 0.0003 11 1 6.0251 -4.3208 0.5901 12 6 6.7074 -4.0590 -1.4365 13 6 7.9144 -3.2858 0.6098 14 1 7.7995 -3.0167 1.6597 15 6 8.5838 -2.1334 -0.1418 16 7 8.7456 -4.4874 0.5019 17 6 9.7807 -4.6846 1.3765 18 1 9.9815 -3.9566 2.1486 19 6 10.5719 -5.8203 1.2707 20 7 10.3274 -6.7072 0.3294 21 14 11.9834 -6.0898 2.4641 22 1 11.4549 -6.1487 3.8506 23 1 12.6685 -7.3669 2.1403 24 1 12.9494 -4.9677 2.3497 25 6 2.2060 -1.1939 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6629 2.1274 -0.0004 30 1 5.3136 0.1560 0.0103 31 1 6.1948 -1.4660 -0.0004 32 1 7.2945 -4.9774 -1.4361 33 1 5.7270 -4.2553 -1.8707 34 1 7.2205 -3.2995 -2.0262 35 1 8.6987 -2.4026 -1.1917 36 1 7.9653 -1.2395 -0.0615 37 1 9.5639 -1.9370 0.2927 38 1 8.5653 -5.1412 -0.1916 39 1 10.8801 -7.5010 0.2557 40 1 1.6858 -2.1404 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485134012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:37 Heat of formation + Delta-G solvation = -16.889525 kcal Electronic energy + Delta-G solvation = -21039.823238 eV Core-core repulsion = 17853.765263 eV Total energy + Delta-G solvation = -3186.057975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77327 -40.39732 -38.42302 -35.71635 -34.66678 -33.86393 -32.94828 -30.86108 -29.81828 -28.20503 -26.25182 -25.99515 -24.39829 -23.75194 -21.56532 -20.76134 -19.51930 -18.82043 -17.95206 -17.46628 -16.69852 -16.62746 -16.19689 -15.92849 -15.61203 -15.26885 -15.00984 -14.66849 -14.36133 -14.14170 -13.94941 -13.62827 -13.49455 -13.44941 -13.11258 -13.00742 -12.81390 -12.77031 -12.64838 -12.18314 -12.03902 -11.68124 -11.62954 -11.33437 -10.94416 -10.89117 -10.49495 -10.23100 -9.94344 -9.03489 -7.93426 -5.22389 -0.41819 0.14114 1.48449 1.51142 1.57017 1.76269 1.97738 2.58274 2.78268 3.26691 3.40200 3.63411 3.78621 3.80266 3.87454 3.91918 3.97769 4.06022 4.18531 4.30990 4.50248 4.58931 4.67640 4.76487 4.84057 4.85372 4.94510 4.95455 5.01930 5.16983 5.19237 5.23239 5.24894 5.44084 5.53503 5.58892 5.62870 6.28577 6.42783 6.80373 7.09342 7.35292 8.09189 8.32442 9.29945 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038130 B = 0.003251 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.162106 B = 8611.770901 C = 8883.885960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.500 5.500 5 C 0.127 3.873 6 C -0.193 4.193 7 C 0.560 3.440 8 O -0.577 6.577 9 N -0.699 5.699 10 C 0.149 3.851 11 H 0.060 0.940 12 C -0.150 4.150 13 C 0.165 3.835 14 H 0.048 0.952 15 C -0.160 4.160 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.078 0.922 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.276 1.276 25 C -0.034 4.034 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.193 0.807 30 H 0.176 0.824 31 H 0.412 0.588 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.377 0.623 39 H 0.251 0.749 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.349 18.508 -2.170 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.037 4.037 4 N -0.208 5.208 5 C -0.031 4.031 6 C -0.198 4.198 7 C 0.348 3.652 8 O -0.458 6.458 9 N -0.352 5.352 10 C 0.044 3.956 11 H 0.079 0.921 12 C -0.208 4.208 13 C 0.056 3.944 14 H 0.066 0.934 15 C -0.220 4.220 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.096 0.904 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.801 3.199 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.202 1.202 25 C -0.060 4.060 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.210 0.790 30 H 0.193 0.807 31 H 0.252 0.748 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.211 0.789 39 H 0.059 0.941 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.151 18.573 -2.024 26.048 hybrid contribution 0.814 -1.555 0.307 1.782 sum -17.337 17.017 -1.717 24.354 Atomic orbital electron populations 1.20827 0.87246 1.04606 1.03898 1.21248 0.99632 0.92714 1.00478 1.23506 0.89513 0.99054 0.91634 1.67775 1.09152 1.30745 1.13092 1.23203 1.01242 0.86233 0.92457 1.20908 0.95505 0.94069 1.09295 1.18448 0.82457 0.88702 0.75611 1.90762 1.71844 1.31362 1.51796 1.45924 1.05247 1.10196 1.73829 1.20957 0.91387 0.86106 0.97189 0.92143 1.22036 1.01230 1.01717 0.95867 1.20530 0.88257 0.88133 0.97443 0.93366 1.22383 1.00834 0.97979 1.00783 1.42637 1.34627 1.22710 1.37638 1.19579 1.05558 1.03642 1.08341 0.90431 1.25540 1.02758 0.97471 1.00979 1.69811 1.42905 1.12572 1.36732 0.85230 0.79368 0.76653 0.78607 1.20620 1.22434 1.20239 1.21803 0.92328 0.99948 0.91960 0.89593 0.88752 0.90883 0.79037 0.80700 0.74844 0.92688 0.93003 0.90743 0.92832 0.90557 0.93633 0.78920 0.94060 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.03 71.24 0.71 -0.13 16 2 C -0.14 -2.01 5.89 -19.81 -0.12 -2.13 16 3 C 0.12 1.71 10.85 84.71 0.92 2.63 16 4 N -0.50 -9.49 10.35 -194.75 -2.01 -11.50 16 5 C 0.13 2.45 10.71 85.02 0.91 3.36 16 6 C -0.19 -4.44 5.89 -19.99 -0.12 -4.55 16 7 C 0.56 16.42 7.75 86.78 0.67 17.09 16 8 O -0.58 -21.61 16.08 -3.88 -0.06 -21.67 16 9 N -0.70 -18.76 4.94 -445.40 -2.20 -20.96 16 10 C 0.15 5.12 2.62 44.99 0.12 5.23 16 11 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16 12 C -0.15 -5.09 9.00 71.98 0.65 -4.44 16 13 C 0.17 6.21 2.93 44.99 0.13 6.34 16 14 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 15 C -0.16 -4.95 9.00 71.98 0.65 -4.30 16 16 N -0.73 -36.08 5.03 -322.94 -1.63 -37.70 16 17 C -0.24 -13.05 9.93 84.03 0.83 -12.21 16 18 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 20 N -0.97 -59.21 13.06 21.65 0.28 -58.92 16 21 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C -0.03 -0.70 9.39 22.73 0.21 -0.48 16 26 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.09 0.35 8.09 -2.39 -0.02 0.33 16 28 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 29 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.18 2.55 6.42 -2.91 -0.02 2.53 16 31 H 0.41 8.40 4.64 -92.71 -0.43 7.97 16 32 H 0.05 2.13 6.29 -2.39 -0.02 2.12 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.24 6.56 -2.39 -0.02 2.22 16 35 H 0.05 1.68 6.56 -2.39 -0.02 1.67 16 36 H 0.08 1.66 6.29 -2.39 -0.02 1.65 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.38 19.92 5.77 -92.71 -0.54 19.38 16 39 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.14 2.98 7.74 -2.91 -0.02 2.95 16 Total: -1.00 -71.33 330.59 2.55 -68.78 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.10 Total: 31.42 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 6.04 Total: 2.59 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -5.56 Total: -129.08 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.06 Total: -21.67 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -71.33 2.55 -68.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485134012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.890 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds